RNA–Protein interactions for RNA: ENST00000412507.1

TRIM56-202, Transcript of tripartite motif containing 56, humanhuman

APPRIS ALT2 TSL 1 (best)

Gene TRIM56, Length 1,129 nt, Biotype protein coding.

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
TRIM56-202ENST00000412507 SLC4A1APQ9BWU0 796 aaKnown RBP28.2■■■□□ 2.1
TRIM56-202ENST00000412507 SETD5Q9C0A6 1442 aa28.18■■■□□ 2.1
TRIM56-202ENST00000412507 PPP1R15AO75807 674 aaPredicted RBP28.13■■■□□ 2.09
TRIM56-202ENST00000412507 HDGFP51858 240 aaKnown RBP28.13■■■□□ 2.09
TRIM56-202ENST00000412507 SENP3Q9H4L4 574 aaPredicted RBP28.13■■■□□ 2.09
TRIM56-202ENST00000412507 BCANQ96GW7 911 aa28.12■■■□□ 2.09
TRIM56-202ENST00000412507 SLC26A8Q96RN1 970 aa28.12■■■□□ 2.09
TRIM56-202ENST00000412507 XIRP1Q702N8 1843 aaKnown RBP28.11■■■□□ 2.09
TRIM56-202ENST00000412507 NUTM2DQ5VT03 806 aaPredicted RBP28.11■■■□□ 2.09
TRIM56-202ENST00000412507 PLEKHG1Q9ULL1 1385 aa28.1■■■□□ 2.09
TRIM56-202ENST00000412507 ABCF1Q8NE71 845 aaKnown RBP eCLIP28.09■■■□□ 2.09
TRIM56-202ENST00000412507 CHD2O14647 1828 aaKnown RBP28.08■■■□□ 2.09
TRIM56-202ENST00000412507 FOXD1Q16676 465 aa28.08■■■□□ 2.09
TRIM56-202ENST00000412507 LRRC7Q96NW7 1537 aa28.08■■■□□ 2.08
TRIM56-202ENST00000412507 MPHOSPH9Q99550 1183 aa28.07■■■□□ 2.08
TRIM56-202ENST00000412507 RAB3GAP2Q9H2M9 1393 aa28.07■■■□□ 2.08
TRIM56-202ENST00000412507 ZNF326Q5BKZ1 582 aaKnown RBP28.06■■■□□ 2.08
TRIM56-202ENST00000412507 UBAP1LF5GYI3 381 aa28.05■■■□□ 2.08
TRIM56-202ENST00000412507 ACIN1Q9UKV3 1341 aaKnown RBP28.03■■■□□ 2.08
TRIM56-202ENST00000412507 NEXMIFQ5QGS0 1516 aa28.02■■■□□ 2.08
TRIM56-202ENST00000412507 NWD1Q149M9 1564 aa28.01■■■□□ 2.07
TRIM56-202ENST00000412507 NRXN3Q9Y4C0 1643 aa28■■■□□ 2.07
TRIM56-202ENST00000412507 DIP2AQ14689 1571 aa27.99■■■□□ 2.07
TRIM56-202ENST00000412507 KCNA6P17658 529 aa27.99■■■□□ 2.07
TRIM56-202ENST00000412507 ADAMTS13Q76LX8 1427 aa27.99■■■□□ 2.07
TRIM56-202ENST00000412507 PPLO60437 1756 aa27.99■■■□□ 2.07
TRIM56-202ENST00000412507 TBX22Q9Y458 520 aa27.96■■■□□ 2.07
TRIM56-202ENST00000412507 SETBP1Q9Y6X0 1596 aa27.94■■■□□ 2.06
TRIM56-202ENST00000412507 ALKQ9UM73 1620 aa27.94■■■□□ 2.06
TRIM56-202ENST00000412507 CCDC144AA2RUR9 1427 aa27.93■■■□□ 2.06
TRIM56-202ENST00000412507 NKTRP30414 1462 aaKnown RBP27.92■■■□□ 2.06
TRIM56-202ENST00000412507 TOM1O60784 492 aa27.92■■■□□ 2.06
TRIM56-202ENST00000412507 PROSER2Q86WR7 435 aaPredicted RBP27.91■■■□□ 2.06
TRIM56-202ENST00000412507 IFT172Q9UG01 1749 aa27.89■■■□□ 2.06
TRIM56-202ENST00000412507 TMEM94Q12767 1356 aa27.89■■■□□ 2.06
TRIM56-202ENST00000412507 PIP4K2BP78356 416 aa27.88■■■□□ 2.05
TRIM56-202ENST00000412507 SCAF1Q9H7N4 1312 aaKnown RBP27.88■■■□□ 2.05
TRIM56-202ENST00000412507 RBM33Q96EV2 1170 aaKnown RBP27.87■■■□□ 2.05
TRIM56-202ENST00000412507 HRCP23327 699 aa27.86■■■□□ 2.05
TRIM56-202ENST00000412507 RPGRIP1LQ68CZ1 1315 aa27.86■■■□□ 2.05
TRIM56-202ENST00000412507 PIK3R4Q99570 1358 aa27.86■■■□□ 2.05
TRIM56-202ENST00000412507 SETD1AO15047 1707 aaKnown RBP27.85■■■□□ 2.05
TRIM56-202ENST00000412507 SPATA31E1Q6ZUB1 1445 aa27.84■■■□□ 2.05
TRIM56-202ENST00000412507 PTPRUQ92729 1446 aa27.83■■■□□ 2.05
TRIM56-202ENST00000412507 XRN1Q8IZH2 1706 aaKnown RBP27.82■■■□□ 2.04
TRIM56-202ENST00000412507 VGFO15240 615 aaPredicted RBP27.82■■■□□ 2.04
TRIM56-202ENST00000412507 RGL3Q3MIN7 710 aa27.82■■■□□ 2.04
TRIM56-202ENST00000412507 METP08581 1390 aa27.79■■■□□ 2.04
TRIM56-202ENST00000412507 AMOTL2Q9Y2J4 779 aa27.79■■■□□ 2.04
TRIM56-202ENST00000412507 ANKRD30BQ9BXX2 1392 aa27.74■■■□□ 2.03
TRIM56-202ENST00000412507 SIPA1L2Q9P2F8 1722 aaPredicted RBP27.74■■■□□ 2.03
TRIM56-202ENST00000412507 MSH6P52701 1360 aa27.73■■■□□ 2.03
TRIM56-202ENST00000412507 ADGRF5Q8IZF2 1346 aa27.72■■■□□ 2.03
TRIM56-202ENST00000412507 HSPA1LP34931 641 aa27.72■■■□□ 2.03
TRIM56-202ENST00000412507 NCOA3Q9Y6Q9 1424 aa27.71■■■□□ 2.03
TRIM56-202ENST00000412507 ROBO1Q9Y6N7 1651 aa27.69■■■□□ 2.02
TRIM56-202ENST00000412507 C14orf37Q86TY3 774 aa27.69■■■□□ 2.02
TRIM56-202ENST00000412507 NALCNQ8IZF0 1738 aa27.64■■■□□ 2.01
TRIM56-202ENST00000412507 PIK3C2GO75747 1445 aa27.62■■■□□ 2.01
TRIM56-202ENST00000412507 FAM135BQ49AJ0 1406 aa27.62■■■□□ 2.01
TRIM56-202ENST00000412507 C19orf44Q9H6X5 657 aa27.62■■■□□ 2.01
TRIM56-202ENST00000412507 MYOM2P54296 1465 aa27.6■■■□□ 2.01
TRIM56-202ENST00000412507 SLAIN2Q9P270 581 aa27.6■■■□□ 2.01
TRIM56-202ENST00000412507 NRXN1Q9ULB1 1477 aa27.58■■■□□ 2.01
TRIM56-202ENST00000412507 ASXL1Q8IXJ9 1541 aa27.58■■■□□ 2.01
TRIM56-202ENST00000412507 PTCH1Q13635 1447 aa27.58■■■□□ 2
TRIM56-202ENST00000412507 LAMC1P11047 1609 aa27.57■■■□□ 2
TRIM56-202ENST00000412507 ATF3P18847 181 aa27.57■■■□□ 2
TRIM56-202ENST00000412507 KNDC1Q76NI1 1749 aa27.56■■■□□ 2
TRIM56-202ENST00000412507 CADPS2Q86UW7 1296 aa27.56■■■□□ 2
TRIM56-202ENST00000412507 ROBO2Q9HCK4 1378 aa27.56■■■□□ 2
TRIM56-202ENST00000412507 PRAG1Q86YV5 1406 aa27.55■■■□□ 2
TRIM56-202ENST00000412507 PHLPP1O60346 1717 aa27.54■■■□□ 2
TRIM56-202ENST00000412507 ADGRL3Q9HAR2 1447 aa27.54■■■□□ 2
TRIM56-202ENST00000412507 DCCP43146 1447 aa27.53■■■□□ 2
TRIM56-202ENST00000412507 TMEM132EQ6IEE7 984 aa27.53■■■□□ 2
TRIM56-202ENST00000412507 C14orf93Q9H972 538 aaKnown RBP27.51■■□□□ 1.99
TRIM56-202ENST00000412507 TRIM26Q12899 539 aaPredicted RBP27.5■■□□□ 1.99
TRIM56-202ENST00000412507 CFAP70Q5T0N1 1121 aa27.5■■□□□ 1.99
TRIM56-202ENST00000412507 DCAF11Q8TEB1 546 aa27.5■■□□□ 1.99
TRIM56-202ENST00000412507 STK26Q9P289 416 aa27.5■■□□□ 1.99
TRIM56-202ENST00000412507 KDM2AQ9Y2K7 1162 aa27.5■■□□□ 1.99
TRIM56-202ENST00000412507 LRPPRCP42704 1394 aaKnown RBP27.48■■□□□ 1.99
TRIM56-202ENST00000412507 DHX57Q6P158 1386 aaKnown RBP27.48■■□□□ 1.99
TRIM56-202ENST00000412507 DISP3Q9P2K9 1392 aa27.48■■□□□ 1.99
TRIM56-202ENST00000412507 TECPR2O15040 1411 aa27.47■■□□□ 1.99
TRIM56-202ENST00000412507 YTHDC2Q9H6S0 1430 aaKnown RBP27.47■■□□□ 1.99
TRIM56-202ENST00000412507 MST1RQ04912 1400 aa27.46■■□□□ 1.99
TRIM56-202ENST00000412507 MED1Q15648 1581 aaPredicted RBP27.45■■□□□ 1.99
TRIM56-202ENST00000412507 ABCC11Q96J66 1382 aa27.45■■□□□ 1.98
TRIM56-202ENST00000412507 COL16A1Q07092 1604 aaPredicted RBP27.42■■□□□ 1.98
TRIM56-202ENST00000412507 WAPLQ7Z5K2 1190 aa27.42■■□□□ 1.98
TRIM56-202ENST00000412507 AHDC1Q5TGY3 1603 aaPredicted RBP27.41■■□□□ 1.98
TRIM56-202ENST00000412507 BRINP3Q76B58 766 aa27.4■■□□□ 1.98
TRIM56-202ENST00000412507 STAC3Q96MF2 364 aa27.4■■□□□ 1.98
TRIM56-202ENST00000412507 ADGRB1O14514 1584 aa27.39■■□□□ 1.98
TRIM56-202ENST00000412507 NHSL1Q5SYE7 1610 aa27.39■■□□□ 1.98
TRIM56-202ENST00000412507 PLEKHH1Q9ULM0 1364 aa27.38■■□□□ 1.97
TRIM56-202ENST00000412507 CDC42BPGQ6DT37 1551 aa27.38■■□□□ 1.97
TRIM56-202ENST00000412507 C1orf167Q5SNV9 1468 aa27.36■■□□□ 1.97
Retrieved 100 of 20,778 RNA–protein pairs in 38 ms