RNA–Protein interactions for RNA: ENST00000399489.5

HMGB1-204, Transcript of high mobility group box 1, humanhuman

TSL 1 (best) BASIC

Gene HMGB1, Length 1,727 nt, Biotype protein coding, Subcellular localisation Cytosol, Ribosome .

Download Table  
RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
HMGB1-204ENST00000399489 NECTIN2Q92692 538 aa8.39□□□□□ -1.07
HMGB1-204ENST00000399489 WBP1LQ9NX94 342 aa8.39□□□□□ -1.07
HMGB1-204ENST00000399489 SMAPO00193 183 aa8.38□□□□□ -1.07
HMGB1-204ENST00000399489 LCE2CQ5TA81 110 aa8.37□□□□□ -1.07
HMGB1-204ENST00000399489 NUDT18Q6ZVK8 323 aa8.37□□□□□ -1.07
HMGB1-204ENST00000399489 SAMD7Q7Z3H4 446 aa8.36□□□□□ -1.07
HMGB1-204ENST00000399489 PADI6Q6TGC4 694 aa8.35□□□□□ -1.07
HMGB1-204ENST00000399489 FAM198AQ9UFP1 575 aa8.35□□□□□ -1.07
HMGB1-204ENST00000399489 BTBD11A6QL63 1104 aa8.34□□□□□ -1.07
HMGB1-204ENST00000399489 RNF40O75150 1001 aa8.34□□□□□ -1.07
HMGB1-204ENST00000399489 MLLT3P42568 568 aaPredicted RBP8.34□□□□□ -1.07
HMGB1-204ENST00000399489 ZSCAN1Q8NBB4 408 aa8.34□□□□□ -1.07
HMGB1-204ENST00000399489 NUTM2FA1L443 756 aa8.33□□□□□ -1.08
HMGB1-204ENST00000399489 SMYD5Q6GMV2 418 aa8.33□□□□□ -1.08
HMGB1-204ENST00000399489 KRTAP9-9Q9BYP9 154 aa8.33□□□□□ -1.08
HMGB1-204ENST00000399489 KRTAP9-4Q9BYQ2 154 aa8.33□□□□□ -1.08
HMGB1-204ENST00000399489 LORP23490 312 aaPredicted RBP8.32□□□□□ -1.08
HMGB1-204ENST00000399489 SLF2Q8IX21 1173 aa8.32□□□□□ -1.08
HMGB1-204ENST00000399489 HAP1P54257 671 aaPredicted RBP8.32□□□□□ -1.08
HMGB1-204ENST00000399489 TRIM67Q6ZTA4 783 aa8.32□□□□□ -1.08
HMGB1-204ENST00000399489 TTC13Q8NBP0 860 aa8.32□□□□□ -1.08
HMGB1-204ENST00000399489 NPDC1Q9NQX5 325 aaPredicted RBP8.32□□□□□ -1.08
HMGB1-204ENST00000399489 PPP1R18Q6NYC8 613 aa8.31□□□□□ -1.08
HMGB1-204ENST00000399489 AAASQ9NRG9 546 aa8.3□□□□□ -1.08
HMGB1-204ENST00000399489 RBM46Q8TBY0 533 aaKnown RBP8.29□□□□□ -1.08
HMGB1-204ENST00000399489 FCHSD2O94868 740 aa8.29□□□□□ -1.08
HMGB1-204ENST00000399489 KCNMA1Q12791 1236 aa8.29□□□□□ -1.08
HMGB1-204ENST00000399489 EIF4ENIF1Q9NRA8 985 aaKnown RBP8.29□□□□□ -1.08
HMGB1-204ENST00000399489 C3orf80F5H4A9 247 aa8.28□□□□□ -1.08
HMGB1-204ENST00000399489 PTGDRQ13258 359 aa8.28□□□□□ -1.08
HMGB1-204ENST00000399489 SWT1Q5T5J6 900 aaKnown RBP8.28□□□□□ -1.08
HMGB1-204ENST00000399489 PRR14Q9BWN1 585 aa8.28□□□□□ -1.08
HMGB1-204ENST00000399489 IL21Q9HBE4 155 aa8.27□□□□□ -1.09
HMGB1-204ENST00000399489 SEMA3EO15041 775 aa8.26□□□□□ -1.09
HMGB1-204ENST00000399489 DNAJB2P25686 324 aa8.26□□□□□ -1.09
HMGB1-204ENST00000399489 TERTO14746 1132 aaKnown RBP8.26□□□□□ -1.09
HMGB1-204ENST00000399489 PRR20EP86478 221 aa8.26□□□□□ -1.09
HMGB1-204ENST00000399489 PRR20CP86479 221 aa8.26□□□□□ -1.09
HMGB1-204ENST00000399489 PRR20DP86480 221 aa8.26□□□□□ -1.09
HMGB1-204ENST00000399489 PRR20BP86481 221 aa8.26□□□□□ -1.09
HMGB1-204ENST00000399489 PRR20AP86496 221 aa8.26□□□□□ -1.09
HMGB1-204ENST00000399489 EYA1Q99502 592 aa8.25□□□□□ -1.09
HMGB1-204ENST00000399489 C11orf95C9JLR9 678 aaPredicted RBP8.23□□□□□ -1.09
HMGB1-204ENST00000399489 ST8SIA5O15466 376 aa8.23□□□□□ -1.09
HMGB1-204ENST00000399489 MTRQ99707 1265 aa8.23□□□□□ -1.09
HMGB1-204ENST00000399489 TJAP1Q5JTD0 557 aa8.23□□□□□ -1.09
HMGB1-204ENST00000399489 ADGRG1Q9Y653 693 aa8.22□□□□□ -1.09
HMGB1-204ENST00000399489 TESPA1A2RU30 521 aaPredicted RBP8.21□□□□□ -1.09
HMGB1-204ENST00000399489 OATP04181 439 aa8.21□□□□□ -1.09
HMGB1-204ENST00000399489 APLP1P51693 650 aa8.21□□□□□ -1.09
HMGB1-204ENST00000399489 HIC1Q14526 733 aa8.21□□□□□ -1.09
HMGB1-204ENST00000399489 KRTAP4-12Q9BQ66 201 aa8.21□□□□□ -1.09
HMGB1-204ENST00000399489 GGCXP38435 758 aa8.2□□□□□ -1.1
HMGB1-204ENST00000399489 KMT5BQ4FZB7 885 aa8.2□□□□□ -1.1
HMGB1-204ENST00000399489 RPL17-C18orf32A0A0A6YYL6 228 aaKnown RBP8.2□□□□□ -1.1
HMGB1-204ENST00000399489 FAM187AA6NFU0 413 aa8.2□□□□□ -1.1
HMGB1-204ENST00000399489 TULP1O00294 542 aaPredicted RBP8.2□□□□□ -1.1
HMGB1-204ENST00000399489 RSPH4AQ5TD94 716 aa8.2□□□□□ -1.1
HMGB1-204ENST00000399489 GSK3AP49840 483 aa8.19□□□□□ -1.1
HMGB1-204ENST00000399489 TMEM134Q9H6X4 195 aa8.19□□□□□ -1.1
HMGB1-204ENST00000399489 RCCD1A6NED2 376 aa8.18□□□□□ -1.1
HMGB1-204ENST00000399489 PCDHB3Q9Y5E6 796 aa8.18□□□□□ -1.1
HMGB1-204ENST00000399489 PRKCSHP14314 528 aaPredicted RBP8.17□□□□□ -1.1
HMGB1-204ENST00000399489 COPS2P61201 443 aa8.17□□□□□ -1.1
HMGB1-204ENST00000399489 CRIPAKQ8N1N5 446 aa8.17□□□□□ -1.1
HMGB1-204ENST00000399489 RBM26Q5T8P6 1007 aaKnown RBP8.16□□□□□ -1.1
HMGB1-204ENST00000399489 VSIG10Q8N0Z9 540 aa8.16□□□□□ -1.1
HMGB1-204ENST00000399489 GMPR2Q9P2T1 348 aaKnown RBP8.16□□□□□ -1.1
HMGB1-204ENST00000399489 GNPATO15228 680 aa8.15□□□□□ -1.1
HMGB1-204ENST00000399489 TMEM151AQ8N4L1 468 aa8.15□□□□□ -1.1
HMGB1-204ENST00000399489 KRTAP4-7Q9BYR0 210 aa8.15□□□□□ -1.1
HMGB1-204ENST00000399489 FAM161AQ3B820 660 aa8.15□□□□□ -1.11
HMGB1-204ENST00000399489 ZNF516Q92618 1163 aa8.15□□□□□ -1.11
HMGB1-204ENST00000399489 PXYLP1Q8TE99 480 aa8.14□□□□□ -1.11
HMGB1-204ENST00000399489 ZPR1O75312 459 aa8.13□□□□□ -1.11
HMGB1-204ENST00000399489 CFHP08603 1231 aa8.13□□□□□ -1.11
HMGB1-204ENST00000399489 ACTN4O43707 911 aaKnown RBP8.12□□□□□ -1.11
HMGB1-204ENST00000399489 GPIHBP1Q8IV16 184 aa8.12□□□□□ -1.11
HMGB1-204ENST00000399489 TMUB1Q9BVT8 246 aa8.12□□□□□ -1.11
HMGB1-204ENST00000399489 KDM2AQ9Y2K7 1162 aa8.11□□□□□ -1.11
HMGB1-204ENST00000399489 NR1I2O75469 434 aa8.1□□□□□ -1.11
HMGB1-204ENST00000399489 BLOC1S3Q6QNY0 202 aa8.1□□□□□ -1.11
HMGB1-204ENST00000399489 METTL3Q86U44 580 aaKnown RBP8.1□□□□□ -1.11
HMGB1-204ENST00000399489 NKX2-3Q8TAU0 364 aa8.09□□□□□ -1.11
HMGB1-204ENST00000399489 BCANQ96GW7 911 aa8.09□□□□□ -1.11
HMGB1-204ENST00000399489 DAXXQ9UER7 740 aaPredicted RBP8.09□□□□□ -1.11
HMGB1-204ENST00000399489 IGHA1P01876 353 aa8.08□□□□□ -1.12
HMGB1-204ENST00000399489 RDH13Q8NBN7 331 aa8.08□□□□□ -1.12
HMGB1-204ENST00000399489 DACH1Q9UI36 760 aa8.08□□□□□ -1.12
HMGB1-204ENST00000399489 SULF1Q8IWU6 871 aa8.07□□□□□ -1.12
HMGB1-204ENST00000399489 GDF11O95390 407 aa8.06□□□□□ -1.12
HMGB1-204ENST00000399489 SLC10A3P09131 477 aa8.06□□□□□ -1.12
HMGB1-204ENST00000399489 GPR37O15354 613 aa8.05□□□□□ -1.12
HMGB1-204ENST00000399489 FECHP22830 423 aa8.05□□□□□ -1.12
HMGB1-204ENST00000399489 GMPRP36959 345 aa8.04□□□□□ -1.12
HMGB1-204ENST00000399489 SLC16A10Q8TF71 515 aa8.04□□□□□ -1.12
HMGB1-204ENST00000399489 DDX11L8A8MPP1 907 aa8.03□□□□□ -1.12
HMGB1-204ENST00000399489 ADH1BP00325 375 aa8.03□□□□□ -1.12
HMGB1-204ENST00000399489 ZNF598Q86UK7 904 aaKnown RBP8.03□□□□□ -1.12
HMGB1-204ENST00000399489 TLL1O43897 1013 aa8.02□□□□□ -1.13
Retrieved 100 of 20,778 RNA–protein pairs in 85.7 ms