RNA–Protein interactions for RNA: ENST00000397442.5

CPNE1-203, Transcript of copine 1, humanhuman

TSL 5 BASIC

Gene CPNE1, Length 1,695 nt, Biotype protein coding, Subcellular localisation Cytosol, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CPNE1-203ENST00000397442 KDM5AP29375 1690 aaKnown RBP39.03■■■■□ 3.84
CPNE1-203ENST00000397442 PLPPR3Q6T4P5 718 aa39.01■■■■□ 3.84
CPNE1-203ENST00000397442 STAG3Q9UJ98 1225 aa39■■■■□ 3.83
CPNE1-203ENST00000397442 UBR1Q8IWV7 1749 aa38.98■■■■□ 3.83
CPNE1-203ENST00000397442 GPRASP1Q5JY77 1395 aa38.97■■■■□ 3.83
CPNE1-203ENST00000397442 NBPF1Q3BBV0 1214 aa38.97■■■■□ 3.83
CPNE1-203ENST00000397442 ZFYVE9O95405 1425 aa38.96■■■■□ 3.83
CPNE1-203ENST00000397442 ROCK2O75116 1388 aaKnown RBP38.96■■■■□ 3.83
CPNE1-203ENST00000397442 KIAA1210Q9ULL0 1709 aa38.95■■■■□ 3.83
CPNE1-203ENST00000397442 PIK3C2GO75747 1445 aa38.94■■■■□ 3.82
CPNE1-203ENST00000397442 MYO3AQ8NEV4 1616 aa38.93■■■■□ 3.82
CPNE1-203ENST00000397442 LAMC1P11047 1609 aa38.92■■■■□ 3.82
CPNE1-203ENST00000397442 VGFO15240 615 aaPredicted RBP38.92■■■■□ 3.82
CPNE1-203ENST00000397442 EIF4G2P78344 907 aaKnown RBP eCLIP38.92■■■■□ 3.82
CPNE1-203ENST00000397442 PTPRMP28827 1452 aa38.91■■■■□ 3.82
CPNE1-203ENST00000397442 HSPA5P11021 654 aaKnown RBP38.91■■■■□ 3.82
CPNE1-203ENST00000397442 HIRIP3Q9BW71 556 aaPredicted RBP38.91■■■■□ 3.82
CPNE1-203ENST00000397442 CARD11Q9BXL7 1154 aa38.91■■■■□ 3.82
CPNE1-203ENST00000397442 NUTM2DQ5VT03 806 aaPredicted RBP38.9■■■■□ 3.82
CPNE1-203ENST00000397442 RIMS2Q9UQ26 1411 aa38.88■■■■□ 3.81
CPNE1-203ENST00000397442 USP47Q96K76 1375 aa38.86■■■■□ 3.81
CPNE1-203ENST00000397442 CFAP70Q5T0N1 1121 aa38.84■■■■□ 3.81
CPNE1-203ENST00000397442 TMEM2Q9UHN6 1383 aa38.81■■■■□ 3.8
CPNE1-203ENST00000397442 SETD1BQ9UPS6 1966 aaKnown RBP38.81■■■■□ 3.8
CPNE1-203ENST00000397442 C14orf93Q9H972 538 aaKnown RBP38.81■■■■□ 3.8
CPNE1-203ENST00000397442 CEP170BQ9Y4F5 1589 aaPredicted RBP38.8■■■■□ 3.8
CPNE1-203ENST00000397442 SETBP1Q9Y6X0 1596 aa38.77■■■■□ 3.8
CPNE1-203ENST00000397442 ZNF142P52746 1687 aaPredicted RBP38.76■■■■□ 3.8
CPNE1-203ENST00000397442 IQGAP1P46940 1657 aa38.75■■■■□ 3.79
CPNE1-203ENST00000397442 SLIT1O75093 1534 aa38.74■■■■□ 3.79
CPNE1-203ENST00000397442 ABCF1Q8NE71 845 aaKnown RBP eCLIP38.74■■■■□ 3.79
CPNE1-203ENST00000397442 ARHGAP23Q9P227 1491 aa38.73■■■■□ 3.79
CPNE1-203ENST00000397442 ADGRB1O14514 1584 aa38.73■■■■□ 3.79
CPNE1-203ENST00000397442 KDM4FA0A1W2PPD8 638 aa38.7■■■■□ 3.79
CPNE1-203ENST00000397442 THEMISQ8N1K5 641 aaPredicted RBP38.68■■■■□ 3.78
CPNE1-203ENST00000397442 SCAF11Q99590 1463 aaKnown RBP38.68■■■■□ 3.78
CPNE1-203ENST00000397442 HDGFP51858 240 aaKnown RBP38.68■■■■□ 3.78
CPNE1-203ENST00000397442 ST20-MTHFSA0A0A6YYL1 179 aa38.66■■■■□ 3.78
CPNE1-203ENST00000397442 ALKQ9UM73 1620 aa38.66■■■■□ 3.78
CPNE1-203ENST00000397442 NRXN3Q9Y4C0 1643 aa38.66■■■■□ 3.78
CPNE1-203ENST00000397442 ASXL1Q8IXJ9 1541 aa38.64■■■■□ 3.78
CPNE1-203ENST00000397442 LTKP29376 864 aa38.64■■■■□ 3.78
CPNE1-203ENST00000397442 SENP3Q9H4L4 574 aaPredicted RBP38.63■■■■□ 3.77
CPNE1-203ENST00000397442 SETD1AO15047 1707 aaKnown RBP38.62■■■■□ 3.77
CPNE1-203ENST00000397442 TMEM132EQ6IEE7 984 aa38.61■■■■□ 3.77
CPNE1-203ENST00000397442 C11orf95C9JLR9 678 aaPredicted RBP38.58■■■■□ 3.77
CPNE1-203ENST00000397442 TXNDC2Q86VQ3 553 aa38.58■■■■□ 3.77
CPNE1-203ENST00000397442 PLEKHG1Q9ULL1 1385 aa38.56■■■■□ 3.76
CPNE1-203ENST00000397442 POLR1AO95602 1720 aaPredicted RBP38.55■■■■□ 3.76
CPNE1-203ENST00000397442 EID1Q9Y6B2 187 aa38.55■■■■□ 3.76
CPNE1-203ENST00000397442 WASHC2AQ641Q2 1341 aa38.54■■■■□ 3.76
CPNE1-203ENST00000397442 TESK2Q96S53 571 aa38.52■■■■□ 3.76
CPNE1-203ENST00000397442 EIF3AQ14152 1382 aaKnown RBP38.51■■■■□ 3.76
CPNE1-203ENST00000397442 DIEXFQ68CQ4 756 aaKnown RBP38.51■■■■□ 3.76
CPNE1-203ENST00000397442 ADAMTS13Q76LX8 1427 aa38.49■■■■□ 3.75
CPNE1-203ENST00000397442 CCDC7Q96M83 1385 aa38.48■■■■□ 3.75
CPNE1-203ENST00000397442 TRAK1Q9UPV9 953 aa38.46■■■■□ 3.75
CPNE1-203ENST00000397442 KIF7Q2M1P5 1343 aa38.46■■■■□ 3.75
CPNE1-203ENST00000397442 YTHDC2Q9H6S0 1430 aaKnown RBP38.45■■■■□ 3.75
CPNE1-203ENST00000397442 MED14O60244 1454 aa38.45■■■■□ 3.75
CPNE1-203ENST00000397442 ARHGEF28Q8N1W1 1705 aaKnown RBP38.45■■■■□ 3.75
CPNE1-203ENST00000397442 METP08581 1390 aa38.43■■■■□ 3.74
CPNE1-203ENST00000397442 BCANQ96GW7 911 aa38.4■■■■□ 3.74
CPNE1-203ENST00000397442 DDX10Q13206 875 aaKnown RBP38.39■■■■□ 3.74
CPNE1-203ENST00000397442 ANKLE2Q86XL3 938 aa38.39■■■■□ 3.74
CPNE1-203ENST00000397442 LRPPRCP42704 1394 aaKnown RBP38.37■■■■□ 3.73
CPNE1-203ENST00000397442 STK26Q9P289 416 aa38.36■■■■□ 3.73
CPNE1-203ENST00000397442 DISP3Q9P2K9 1392 aa38.36■■■■□ 3.73
CPNE1-203ENST00000397442 CENPJQ9HC77 1338 aaPredicted RBP38.36■■■■□ 3.73
CPNE1-203ENST00000397442 SBNO2Q9Y2G9 1366 aa38.35■■■■□ 3.73
CPNE1-203ENST00000397442 QRICH2Q9H0J4 1663 aa38.34■■■■□ 3.73
CPNE1-203ENST00000397442 DIP2AQ14689 1571 aa38.33■■■■□ 3.73
CPNE1-203ENST00000397442 SLC26A8Q96RN1 970 aa38.33■■■■□ 3.73
CPNE1-203ENST00000397442 ABCC11Q96J66 1382 aa38.32■■■■□ 3.72
CPNE1-203ENST00000397442 DLC1Q96QB1 1528 aa38.32■■■■□ 3.72
CPNE1-203ENST00000397442 TBX22Q9Y458 520 aa38.31■■■■□ 3.72
CPNE1-203ENST00000397442 TMF1P82094 1093 aa38.3■■■■□ 3.72
CPNE1-203ENST00000397442 KNDC1Q76NI1 1749 aa38.29■■■■□ 3.72
CPNE1-203ENST00000397442 TECPR2O15040 1411 aa38.27■■■■□ 3.72
CPNE1-203ENST00000397442 LMTK3Q96Q04 1460 aa38.24■■■■□ 3.71
CPNE1-203ENST00000397442 PTPRUQ92729 1446 aa38.23■■■■□ 3.71
CPNE1-203ENST00000397442 SLC24A1O60721 1099 aa38.23■■■■□ 3.71
CPNE1-203ENST00000397442 PRAM1Q96QH2 718 aa38.22■■■■□ 3.71
CPNE1-203ENST00000397442 CPS1P31327 1500 aa38.22■■■■□ 3.71
CPNE1-203ENST00000397442 NPHP4O75161 1426 aaPredicted RBP38.21■■■■□ 3.71
CPNE1-203ENST00000397442 POLR3GLQ9BT43 218 aa38.2■■■■□ 3.71
CPNE1-203ENST00000397442 NCKAP5LQ9HCH0 1330 aa38.2■■■■□ 3.71
CPNE1-203ENST00000397442 SIRT1Q96EB6 747 aa38.17■■■■□ 3.7
CPNE1-203ENST00000397442 FAM135BQ49AJ0 1406 aa38.16■■■■□ 3.7
CPNE1-203ENST00000397442 PLEKHH1Q9ULM0 1364 aa38.16■■■■□ 3.7
CPNE1-203ENST00000397442 SAFB2Q14151 953 aaKnown RBP eCLIP38.15■■■■□ 3.73e-13■□□□□ 9.1
CPNE1-203ENST00000397442 POGKQ9P215 609 aa38.15■■■■□ 3.7
CPNE1-203ENST00000397442 HSPA2P54652 639 aa38.14■■■■□ 3.7
CPNE1-203ENST00000397442 PIK3R4Q99570 1358 aa38.14■■■■□ 3.7
CPNE1-203ENST00000397442 CDCA8Q53HL2 280 aa38.14■■■■□ 3.7
CPNE1-203ENST00000397442 WAPLQ7Z5K2 1190 aa38.14■■■■□ 3.7
CPNE1-203ENST00000397442 TULP4Q9NRJ4 1543 aa38.13■■■■□ 3.7
CPNE1-203ENST00000397442 XRN1Q8IZH2 1706 aaKnown RBP38.12■■■■□ 3.69
CPNE1-203ENST00000397442 ROBO2Q9HCK4 1378 aa38.12■■■■□ 3.69
CPNE1-203ENST00000397442 AMOTL2Q9Y2J4 779 aa38.1■■■■□ 3.69
Retrieved 100 of 20,778 RNA–protein pairs in 8.8 ms