RNA–Protein interactions for RNA: ENST00000396386.6

CBX3-202, Transcript of chromobox 3, humanhuman

APPRIS P1 TSL 1 (best) BASIC

Gene CBX3, Length 1,857 nt, Biotype protein coding, Subcellular localisation Cytosol, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CBX3-202ENST00000396386 YEATS2Q9ULM3 1422 aa20.49■□□□□ 0.87
CBX3-202ENST00000396386 NRXN1Q9ULB1 1477 aa20.48■□□□□ 0.87
CBX3-202ENST00000396386 WASHC2CQ9Y4E1 1318 aa20.46■□□□□ 0.87
CBX3-202ENST00000396386 SYNMO15061 1565 aa20.46■□□□□ 0.87
CBX3-202ENST00000396386 EIF3AQ14152 1382 aaKnown RBP20.45■□□□□ 0.87
CBX3-202ENST00000396386 TMF1P82094 1093 aa20.45■□□□□ 0.86
CBX3-202ENST00000396386 FAM69CQ0P6D2 419 aa20.45■□□□□ 0.86
CBX3-202ENST00000396386 SUPT16HQ9Y5B9 1047 aaKnown RBP20.45■□□□□ 0.86
CBX3-202ENST00000396386 NOS1P29475 1434 aa20.44■□□□□ 0.86
CBX3-202ENST00000396386 REREQ9P2R6 1566 aa20.44■□□□□ 0.86
CBX3-202ENST00000396386 ARHGAP31Q2M1Z3 1444 aa20.43■□□□□ 0.86
CBX3-202ENST00000396386 MYO3AQ8NEV4 1616 aa20.43■□□□□ 0.86
CBX3-202ENST00000396386 SETBP1Q9Y6X0 1596 aa20.43■□□□□ 0.86
CBX3-202ENST00000396386 FAM9BQ8IZU0 186 aa20.42■□□□□ 0.86
CBX3-202ENST00000396386 KDM5AP29375 1690 aaKnown RBP20.41■□□□□ 0.86
CBX3-202ENST00000396386 PREX1Q8TCU6 1659 aa20.41■□□□□ 0.86
CBX3-202ENST00000396386 MYOM1P52179 1685 aa20.4■□□□□ 0.86
CBX3-202ENST00000396386 RALBP1Q15311 655 aa20.39■□□□□ 0.86
CBX3-202ENST00000396386 CNGB1Q14028 1251 aaPredicted RBP20.39■□□□□ 0.85
CBX3-202ENST00000396386 AEBP2Q6ZN18 517 aaPredicted RBP20.39■□□□□ 0.85
CBX3-202ENST00000396386 ADGRF5Q8IZF2 1346 aa20.38■□□□□ 0.85
CBX3-202ENST00000396386 MYBBP1AQ9BQG0 1328 aaKnown RBP20.38■□□□□ 0.85
CBX3-202ENST00000396386 BRD4O60885 1362 aaPredicted RBP20.37■□□□□ 0.85
CBX3-202ENST00000396386 PARD3Q8TEW0 1356 aa20.37■□□□□ 0.85
CBX3-202ENST00000396386 PIK3C2GO75747 1445 aa20.36■□□□□ 0.85
CBX3-202ENST00000396386 ZBED9Q6R2W3 1325 aa20.36■□□□□ 0.85
CBX3-202ENST00000396386 AGLP35573 1532 aa20.36■□□□□ 0.85
CBX3-202ENST00000396386 CHGAP10645 457 aaKnown RBP20.35■□□□□ 0.85
CBX3-202ENST00000396386 NEXMIFQ5QGS0 1516 aa20.35■□□□□ 0.85
CBX3-202ENST00000396386 NEFLP07196 543 aa20.35■□□□□ 0.85
CBX3-202ENST00000396386 CDCA8Q53HL2 280 aa20.35■□□□□ 0.85
CBX3-202ENST00000396386 RPGRIP1LQ68CZ1 1315 aa20.34■□□□□ 0.85
CBX3-202ENST00000396386 CFAP70Q5T0N1 1121 aa20.34■□□□□ 0.85
CBX3-202ENST00000396386 ARHGEF40Q8TER5 1519 aa20.33■□□□□ 0.85
CBX3-202ENST00000396386 MYO5BQ9ULV0 1848 aa20.32■□□□□ 0.84
CBX3-202ENST00000396386 PER1O15534 1290 aaPredicted RBP20.32■□□□□ 0.84
CBX3-202ENST00000396386 TMC1Q8TDI8 760 aa20.31■□□□□ 0.84
CBX3-202ENST00000396386 QRICH2Q9H0J4 1663 aa20.31■□□□□ 0.84
CBX3-202ENST00000396386 ADGRB1O14514 1584 aa20.31■□□□□ 0.84
CBX3-202ENST00000396386 PANK3Q9H999 370 aa20.3■□□□□ 0.84
CBX3-202ENST00000396386 CLTCQ00610 1675 aaKnown RBP20.29■□□□□ 0.84
CBX3-202ENST00000396386 TMEM131LA2VDJ0 1609 aa20.29■□□□□ 0.84
CBX3-202ENST00000396386 ERVK-7P63135 1459 aa20.28■□□□□ 0.84
CBX3-202ENST00000396386 SLC24A1O60721 1099 aa20.28■□□□□ 0.84
CBX3-202ENST00000396386 FKBP8Q14318 412 aa20.28■□□□□ 0.84
CBX3-202ENST00000396386 LRPPRCP42704 1394 aaKnown RBP20.28■□□□□ 0.84
CBX3-202ENST00000396386 SBNO2Q9Y2G9 1366 aa20.28■□□□□ 0.84
CBX3-202ENST00000396386 NLRP13Q86W25 1043 aa20.27■□□□□ 0.84
CBX3-202ENST00000396386 PNISRQ8TF01 805 aaKnown RBP20.27■□□□□ 0.84
CBX3-202ENST00000396386 ARHGEF28Q8N1W1 1705 aaKnown RBP20.25■□□□□ 0.83
CBX3-202ENST00000396386 ASXL1Q8IXJ9 1541 aa20.24■□□□□ 0.83
CBX3-202ENST00000396386 C14orf93Q9H972 538 aaKnown RBP20.24■□□□□ 0.83
CBX3-202ENST00000396386 SLC52A1Q9NWF4 448 aa20.24■□□□□ 0.83
CBX3-202ENST00000396386 ZFYVE9O95405 1425 aa20.22■□□□□ 0.83
CBX3-202ENST00000396386 CC2D1BQ5T0F9 858 aaKnown RBP20.22■□□□□ 0.83
CBX3-202ENST00000396386 PELP1Q8IZL8 1130 aaKnown RBP20.21■□□□□ 0.83
CBX3-202ENST00000396386 CENPJQ9HC77 1338 aaPredicted RBP20.21■□□□□ 0.83
CBX3-202ENST00000396386 VGFO15240 615 aaPredicted RBP20.2■□□□□ 0.82
CBX3-202ENST00000396386 PPP6R1Q9UPN7 881 aa20.2■□□□□ 0.82
CBX3-202ENST00000396386 SPATA31D1Q6ZQQ2 1576 aa20.2■□□□□ 0.82
CBX3-202ENST00000396386 IDI1Q13907 227 aa20.2■□□□□ 0.82
CBX3-202ENST00000396386 KNSTRNQ9Y448 316 aa20.19■□□□□ 0.82
CBX3-202ENST00000396386 SMG6Q86US8 1419 aaKnown RBP20.18■□□□□ 0.82
CBX3-202ENST00000396386 NPC1L1Q9UHC9 1359 aa20.17■□□□□ 0.82
CBX3-202ENST00000396386 BCANQ96GW7 911 aa20.16■□□□□ 0.82
CBX3-202ENST00000396386 INSRP06213 1382 aa20.15■□□□□ 0.82
CBX3-202ENST00000396386 TRAK1Q9UPV9 953 aa20.14■□□□□ 0.81
CBX3-202ENST00000396386 AMER1Q5JTC6 1135 aaPredicted RBP20.13■□□□□ 0.81
CBX3-202ENST00000396386 BLMP54132 1417 aaPredicted RBP20.12■□□□□ 0.81
CBX3-202ENST00000396386 TMEM132EQ6IEE7 984 aa20.11■□□□□ 0.81
CBX3-202ENST00000396386 NUTM2DQ5VT03 806 aaPredicted RBP20.11■□□□□ 0.81
CBX3-202ENST00000396386 FBXO31Q5XUX0 539 aaPredicted RBP20.11■□□□□ 0.81
CBX3-202ENST00000396386 USP32Q8NFA0 1604 aa20.1■□□□□ 0.81
CBX3-202ENST00000396386 TULP4Q9NRJ4 1543 aa20.1■□□□□ 0.81
CBX3-202ENST00000396386 NUDCQ9Y266 331 aa20.09■□□□□ 0.81
CBX3-202ENST00000396386 KDM4FA0A1W2PPD8 638 aa20.07■□□□□ 0.8
CBX3-202ENST00000396386 A2ML1A8K2U0 1454 aa20.07■□□□□ 0.8
CBX3-202ENST00000396386 PPP2R1AP30153 589 aa20.07■□□□□ 0.8
CBX3-202ENST00000396386 ALKQ9UM73 1620 aa20.07■□□□□ 0.8
CBX3-202ENST00000396386 SETD1AO15047 1707 aaKnown RBP20.05■□□□□ 0.8
CBX3-202ENST00000396386 MLECQ14165 292 aa20.05■□□□□ 0.8
CBX3-202ENST00000396386 ERICH6BQ5W0A0 696 aa20.05■□□□□ 0.8
CBX3-202ENST00000396386 PTPRMP28827 1452 aa20.04■□□□□ 0.8
CBX3-202ENST00000396386 STAG3Q9UJ98 1225 aa20.03■□□□□ 0.8
CBX3-202ENST00000396386 EVC2Q86UK5 1308 aa20.02■□□□□ 0.8
CBX3-202ENST00000396386 PUS7Q96PZ0 661 aaKnown RBP20.02■□□□□ 0.8
CBX3-202ENST00000396386 NSD3Q9BZ95 1437 aa20.02■□□□□ 0.79
CBX3-202ENST00000396386 YTHDC2Q9H6S0 1430 aaKnown RBP20.02■□□□□ 0.79
CBX3-202ENST00000396386 IRX6P78412 446 aaPredicted RBP20.01■□□□□ 0.79
CBX3-202ENST00000396386 CARD14Q9BXL6 1004 aa20.01■□□□□ 0.79
CBX3-202ENST00000396386 RIMS2Q9UQ26 1411 aa20■□□□□ 0.79
CBX3-202ENST00000396386 ESF1Q9H501 851 aaKnown RBP20■□□□□ 0.79
CBX3-202ENST00000396386 SENP3-EIF4A1A0A087X0R7 540 aa19.99■□□□□ 0.79
CBX3-202ENST00000396386 DLC1Q96QB1 1528 aa19.98■□□□□ 0.79
CBX3-202ENST00000396386 ZMYM3Q14202 1370 aa19.98■□□□□ 0.79
CBX3-202ENST00000396386 PDE3BQ13370 1112 aa19.97■□□□□ 0.79
CBX3-202ENST00000396386 WDR43Q15061 677 aaKnown RBP eCLIP19.97■□□□□ 0.79
CBX3-202ENST00000396386 NRXN3Q9Y4C0 1643 aa19.97■□□□□ 0.79
CBX3-202ENST00000396386 NINLQ9Y2I6 1382 aa19.96■□□□□ 0.79
CBX3-202ENST00000396386 UBR1Q8IWV7 1749 aa19.95■□□□□ 0.78
Retrieved 100 of 20,778 RNA–protein pairs in 7.5 ms