RNA–Protein interactions for RNA: ENST00000396082.2

UPK3A-202, Transcript of uroplakin 3A, humanhuman

APPRIS ALT2 TSL 1 (best) BASIC

Gene UPK3A, Length 627 nt, Biotype protein coding.

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
UPK3A-202ENST00000396082 STRCP1A6NGW2 1772 aa26.15■■□□□ 1.78
UPK3A-202ENST00000396082 UBAP1LF5GYI3 381 aa26.14■■□□□ 1.78
UPK3A-202ENST00000396082 SENP3Q9H4L4 574 aaPredicted RBP26.14■■□□□ 1.78
UPK3A-202ENST00000396082 TRPM2O94759 1503 aa26.14■■□□□ 1.77
UPK3A-202ENST00000396082 ABCF1Q8NE71 845 aaKnown RBP eCLIP26.13■■□□□ 1.77
UPK3A-202ENST00000396082 SLC26A8Q96RN1 970 aa26.12■■□□□ 1.77
UPK3A-202ENST00000396082 CLTCL1P53675 1640 aa26.11■■□□□ 1.77
UPK3A-202ENST00000396082 PLEKHG1Q9ULL1 1385 aa26.1■■□□□ 1.77
UPK3A-202ENST00000396082 NUTM2DQ5VT03 806 aaPredicted RBP26.09■■□□□ 1.77
UPK3A-202ENST00000396082 SETD5Q9C0A6 1442 aa26.08■■□□□ 1.77
UPK3A-202ENST00000396082 ZNF326Q5BKZ1 582 aaKnown RBP26.08■■□□□ 1.77
UPK3A-202ENST00000396082 KIF1BO60333 1816 aa26.08■■□□□ 1.77
UPK3A-202ENST00000396082 LRRC7Q96NW7 1537 aa26.08■■□□□ 1.77
UPK3A-202ENST00000396082 ACIN1Q9UKV3 1341 aaKnown RBP26.04■■□□□ 1.76
UPK3A-202ENST00000396082 TOM1O60784 492 aa26.03■■□□□ 1.76
UPK3A-202ENST00000396082 SCAF1Q9H7N4 1312 aaKnown RBP26.03■■□□□ 1.76
UPK3A-202ENST00000396082 KCNA6P17658 529 aa26.01■■□□□ 1.75
UPK3A-202ENST00000396082 FOXD1Q16676 465 aa26.01■■□□□ 1.75
UPK3A-202ENST00000396082 MPHOSPH9Q99550 1183 aa26.01■■□□□ 1.75
UPK3A-202ENST00000396082 RAB3GAP2Q9H2M9 1393 aa25.99■■□□□ 1.75
UPK3A-202ENST00000396082 DIP2AQ14689 1571 aa25.99■■□□□ 1.75
UPK3A-202ENST00000396082 NWD1Q149M9 1564 aa25.99■■□□□ 1.75
UPK3A-202ENST00000396082 PIP4K2BP78356 416 aa25.98■■□□□ 1.75
UPK3A-202ENST00000396082 NKTRP30414 1462 aaKnown RBP25.97■■□□□ 1.75
UPK3A-202ENST00000396082 TBX22Q9Y458 520 aa25.96■■□□□ 1.75
UPK3A-202ENST00000396082 ADAMTS13Q76LX8 1427 aa25.96■■□□□ 1.75
UPK3A-202ENST00000396082 XIRP1Q702N8 1843 aaKnown RBP25.95■■□□□ 1.75
UPK3A-202ENST00000396082 NEXMIFQ5QGS0 1516 aa25.95■■□□□ 1.74
UPK3A-202ENST00000396082 PROSER2Q86WR7 435 aaPredicted RBP25.95■■□□□ 1.74
UPK3A-202ENST00000396082 CHD2O14647 1828 aaKnown RBP25.95■■□□□ 1.74
UPK3A-202ENST00000396082 CCDC144AA2RUR9 1427 aa25.94■■□□□ 1.74
UPK3A-202ENST00000396082 TMEM94Q12767 1356 aa25.93■■□□□ 1.74
UPK3A-202ENST00000396082 SETBP1Q9Y6X0 1596 aa25.9■■□□□ 1.74
UPK3A-202ENST00000396082 NRXN3Q9Y4C0 1643 aa25.89■■□□□ 1.74
UPK3A-202ENST00000396082 PIK3R4Q99570 1358 aa25.89■■□□□ 1.74
UPK3A-202ENST00000396082 RBM33Q96EV2 1170 aaKnown RBP25.88■■□□□ 1.73
UPK3A-202ENST00000396082 ALKQ9UM73 1620 aa25.88■■□□□ 1.73
UPK3A-202ENST00000396082 RPGRIP1LQ68CZ1 1315 aa25.86■■□□□ 1.73
UPK3A-202ENST00000396082 VGFO15240 615 aaPredicted RBP25.85■■□□□ 1.73
UPK3A-202ENST00000396082 PPLO60437 1756 aa25.84■■□□□ 1.73
UPK3A-202ENST00000396082 MSH6P52701 1360 aa25.82■■□□□ 1.72
UPK3A-202ENST00000396082 C14orf37Q86TY3 774 aa25.82■■□□□ 1.72
UPK3A-202ENST00000396082 RGL3Q3MIN7 710 aa25.81■■□□□ 1.72
UPK3A-202ENST00000396082 AMOTL2Q9Y2J4 779 aa25.81■■□□□ 1.72
UPK3A-202ENST00000396082 HSPA1LP34931 641 aa25.8■■□□□ 1.72
UPK3A-202ENST00000396082 PTPRUQ92729 1446 aa25.8■■□□□ 1.72
UPK3A-202ENST00000396082 HRCP23327 699 aa25.78■■□□□ 1.72
UPK3A-202ENST00000396082 SPATA31E1Q6ZUB1 1445 aa25.78■■□□□ 1.72
UPK3A-202ENST00000396082 XRN1Q8IZH2 1706 aaKnown RBP25.77■■□□□ 1.72
UPK3A-202ENST00000396082 METP08581 1390 aa25.77■■□□□ 1.72
UPK3A-202ENST00000396082 NCOA3Q9Y6Q9 1424 aa25.75■■□□□ 1.71
UPK3A-202ENST00000396082 IFT172Q9UG01 1749 aa25.74■■□□□ 1.71
UPK3A-202ENST00000396082 ANKRD30BQ9BXX2 1392 aa25.73■■□□□ 1.71
UPK3A-202ENST00000396082 SETD1AO15047 1707 aaKnown RBP25.72■■□□□ 1.71
UPK3A-202ENST00000396082 FAM135BQ49AJ0 1406 aa25.69■■□□□ 1.7
UPK3A-202ENST00000396082 SIPA1L2Q9P2F8 1722 aaPredicted RBP25.68■■□□□ 1.7
UPK3A-202ENST00000396082 ADGRF5Q8IZF2 1346 aa25.68■■□□□ 1.7
UPK3A-202ENST00000396082 ROBO1Q9Y6N7 1651 aa25.68■■□□□ 1.7
UPK3A-202ENST00000396082 ATF3P18847 181 aa25.67■■□□□ 1.7
UPK3A-202ENST00000396082 C19orf44Q9H6X5 657 aa25.67■■□□□ 1.7
UPK3A-202ENST00000396082 DISP3Q9P2K9 1392 aa25.66■■□□□ 1.7
UPK3A-202ENST00000396082 CADPS2Q86UW7 1296 aa25.65■■□□□ 1.7
UPK3A-202ENST00000396082 SLAIN2Q9P270 581 aa25.65■■□□□ 1.7
UPK3A-202ENST00000396082 PIK3C2GO75747 1445 aa25.62■■□□□ 1.69
UPK3A-202ENST00000396082 PTCH1Q13635 1447 aa25.62■■□□□ 1.69
UPK3A-202ENST00000396082 DCCP43146 1447 aa25.6■■□□□ 1.69
UPK3A-202ENST00000396082 MYOM2P54296 1465 aa25.6■■□□□ 1.69
UPK3A-202ENST00000396082 ADGRL3Q9HAR2 1447 aa25.59■■□□□ 1.69
UPK3A-202ENST00000396082 NALCNQ8IZF0 1738 aa25.59■■□□□ 1.69
UPK3A-202ENST00000396082 ROBO2Q9HCK4 1378 aa25.57■■□□□ 1.68
UPK3A-202ENST00000396082 PRAG1Q86YV5 1406 aa25.55■■□□□ 1.68
UPK3A-202ENST00000396082 LAMC1P11047 1609 aa25.55■■□□□ 1.68
UPK3A-202ENST00000396082 PHLPP1O60346 1717 aa25.54■■□□□ 1.68
UPK3A-202ENST00000396082 MED1Q15648 1581 aaPredicted RBP25.54■■□□□ 1.68
UPK3A-202ENST00000396082 STK26Q9P289 416 aa25.54■■□□□ 1.68
UPK3A-202ENST00000396082 NRXN1Q9ULB1 1477 aa25.53■■□□□ 1.68
UPK3A-202ENST00000396082 ASXL1Q8IXJ9 1541 aa25.53■■□□□ 1.68
UPK3A-202ENST00000396082 TMEM132EQ6IEE7 984 aa25.52■■□□□ 1.68
UPK3A-202ENST00000396082 LRPPRCP42704 1394 aaKnown RBP25.51■■□□□ 1.67
UPK3A-202ENST00000396082 MST1RQ04912 1400 aa25.5■■□□□ 1.67
UPK3A-202ENST00000396082 KNDC1Q76NI1 1749 aa25.5■■□□□ 1.67
UPK3A-202ENST00000396082 DCAF11Q8TEB1 546 aa25.5■■□□□ 1.67
UPK3A-202ENST00000396082 KDM2AQ9Y2K7 1162 aa25.5■■□□□ 1.67
UPK3A-202ENST00000396082 C14orf93Q9H972 538 aaKnown RBP25.49■■□□□ 1.67
UPK3A-202ENST00000396082 TECPR2O15040 1411 aa25.48■■□□□ 1.67
UPK3A-202ENST00000396082 YTHDC2Q9H6S0 1430 aaKnown RBP25.48■■□□□ 1.67
UPK3A-202ENST00000396082 CFAP70Q5T0N1 1121 aa25.48■■□□□ 1.67
UPK3A-202ENST00000396082 ABCC11Q96J66 1382 aa25.46■■□□□ 1.67
UPK3A-202ENST00000396082 BRINP3Q76B58 766 aa25.46■■□□□ 1.67
UPK3A-202ENST00000396082 DHX57Q6P158 1386 aaKnown RBP25.45■■□□□ 1.67
UPK3A-202ENST00000396082 AHDC1Q5TGY3 1603 aaPredicted RBP25.45■■□□□ 1.66
UPK3A-202ENST00000396082 STAC3Q96MF2 364 aa25.44■■□□□ 1.66
UPK3A-202ENST00000396082 PHF23Q9BUL5 403 aaPredicted RBP25.44■■□□□ 1.66
UPK3A-202ENST00000396082 COL16A1Q07092 1604 aaPredicted RBP25.44■■□□□ 1.66
UPK3A-202ENST00000396082 TRIM26Q12899 539 aaPredicted RBP25.42■■□□□ 1.66
UPK3A-202ENST00000396082 WAPLQ7Z5K2 1190 aa25.42■■□□□ 1.66
UPK3A-202ENST00000396082 CDC42BPGQ6DT37 1551 aa25.41■■□□□ 1.66
UPK3A-202ENST00000396082 JCADQ9P266 1359 aa25.4■■□□□ 1.66
UPK3A-202ENST00000396082 PLEKHH1Q9ULM0 1364 aa25.4■■□□□ 1.66
UPK3A-202ENST00000396082 C1orf167Q5SNV9 1468 aa25.4■■□□□ 1.66
Retrieved 100 of 20,778 RNA–protein pairs in 20.5 ms