RNA–Protein interactions for RNA: ENST00000394536.4

PCDH1-203, Transcript of protocadherin 1, humanhuman

APPRIS ALT2 TSL 1 (best) BASIC

Gene PCDH1, Length 3,827 nt, Biotype protein coding, Subcellular localisation Cytosol, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
PCDH1-203ENST00000394536 MTHFSP49914 203 aa20.51■□□□□ 0.87
PCDH1-203ENST00000394536 ABCA5Q8WWZ7 1642 aa20.5■□□□□ 0.87
PCDH1-203ENST00000394536 DISP1Q96F81 1524 aa20.49■□□□□ 0.87
PCDH1-203ENST00000394536 PLPPR3Q6T4P5 718 aa20.49■□□□□ 0.87
PCDH1-203ENST00000394536 PLEKHH2Q8IVE3 1493 aa20.48■□□□□ 0.87
PCDH1-203ENST00000394536 RAPGEF6Q8TEU7 1601 aa20.48■□□□□ 0.87
PCDH1-203ENST00000394536 ELL2O00472 640 aaPredicted RBP20.48■□□□□ 0.87
PCDH1-203ENST00000394536 HSP90AB1P08238 724 aaKnown RBP20.48■□□□□ 0.87
PCDH1-203ENST00000394536 HSCBQ8IWL3 235 aa20.48■□□□□ 0.87
PCDH1-203ENST00000394536 FOXD4L1Q9NU39 408 aa20.48■□□□□ 0.87
PCDH1-203ENST00000394536 ATP10BO94823 1461 aa20.47■□□□□ 0.87
PCDH1-203ENST00000394536 DNMT1P26358 1616 aaKnown RBP20.47■□□□□ 0.87
PCDH1-203ENST00000394536 CCDC141Q6ZP82 1450 aa20.47■□□□□ 0.87
PCDH1-203ENST00000394536 NCLP19338 710 aaKnown RBP20.46■□□□□ 0.87
PCDH1-203ENST00000394536 ANP32BQ92688 251 aaKnown RBP20.46■□□□□ 0.87
PCDH1-203ENST00000394536 RUNDC1Q96C34 613 aa20.46■□□□□ 0.87
PCDH1-203ENST00000394536 GCC2Q8IWJ2 1684 aa20.45■□□□□ 0.86
PCDH1-203ENST00000394536 NAP1L5Q96NT1 182 aaPredicted RBP20.45■□□□□ 0.86
PCDH1-203ENST00000394536 PRAG1Q86YV5 1406 aa20.44■□□□□ 0.86
PCDH1-203ENST00000394536 APBB1O00213 710 aa20.44■□□□□ 0.86
PCDH1-203ENST00000394536 AMER1Q5JTC6 1135 aaPredicted RBP20.44■□□□□ 0.86
PCDH1-203ENST00000394536 SPINK5Q9NQ38 1064 aaPredicted RBP20.44■□□□□ 0.86
PCDH1-203ENST00000394536 IGHDP01880 384 aa20.44■□□□□ 0.86
PCDH1-203ENST00000394536 PLEKHH1Q9ULM0 1364 aa20.44■□□□□ 0.86
PCDH1-203ENST00000394536 ZKSCAN2Q63HK3 967 aa20.44■□□□□ 0.86
PCDH1-203ENST00000394536 TRIM44Q96DX7 344 aaPredicted RBP20.44■□□□□ 0.86
PCDH1-203ENST00000394536 WWC1Q8IX03 1113 aa20.43■□□□□ 0.86
PCDH1-203ENST00000394536 TSR2Q969E8 191 aaKnown RBP20.42■□□□□ 0.86
PCDH1-203ENST00000394536 PDZRN3Q9UPQ7 1066 aa20.42■□□□□ 0.86
PCDH1-203ENST00000394536 ADAMTS12P58397 1594 aa20.42■□□□□ 0.86
PCDH1-203ENST00000394536 GGNBP2Q9H3C7 697 aa20.42■□□□□ 0.86
PCDH1-203ENST00000394536 KIAA0556O60303 1618 aa20.42■□□□□ 0.86
PCDH1-203ENST00000394536 CABP2Q9NPB3 220 aa20.41■□□□□ 0.86
PCDH1-203ENST00000394536 SOX12O15370 315 aa20.41■□□□□ 0.86
PCDH1-203ENST00000394536 SUGP2Q8IX01 1082 aaKnown RBP eCLIP20.41■□□□□ 0.86
PCDH1-203ENST00000394536 PDE3AQ14432 1141 aa20.4■□□□□ 0.86
PCDH1-203ENST00000394536 L1TD1Q5T7N2 865 aaKnown RBP20.4■□□□□ 0.86
PCDH1-203ENST00000394536 DZIP1LQ8IYY4 767 aaKnown RBP20.4■□□□□ 0.86
PCDH1-203ENST00000394536 UHRF1BP1Q6BDS2 1440 aa20.39■□□□□ 0.85
PCDH1-203ENST00000394536 IPO8O15397 1037 aaKnown RBP20.38■□□□□ 0.85
PCDH1-203ENST00000394536 KIF21AQ7Z4S6 1674 aa20.38■□□□□ 0.85
PCDH1-203ENST00000394536 MINK1Q8N4C8 1332 aaPredicted RBP20.38■□□□□ 0.85
PCDH1-203ENST00000394536 ADGRF5Q8IZF2 1346 aa20.37■□□□□ 0.85
PCDH1-203ENST00000394536 GOLGA6L3A6NEY3 463 aa20.37■□□□□ 0.85
PCDH1-203ENST00000394536 C8orf34Q49A92 452 aa20.37■□□□□ 0.85
PCDH1-203ENST00000394536 TPRNQ4KMQ1 711 aa20.37■□□□□ 0.85
PCDH1-203ENST00000394536 KIF14Q15058 1648 aa20.37■□□□□ 0.85
PCDH1-203ENST00000394536 ESF1Q9H501 851 aaKnown RBP20.36■□□□□ 0.85
PCDH1-203ENST00000394536 LNPKQ9C0E8 428 aa20.36■□□□□ 0.85
PCDH1-203ENST00000394536 DMRT2Q9Y5R5 561 aa20.34■□□□□ 0.85
PCDH1-203ENST00000394536 RIPK4P57078 832 aa20.34■□□□□ 0.85
PCDH1-203ENST00000394536 EXOSC9Q06265 439 aaKnown RBP20.34■□□□□ 0.85
PCDH1-203ENST00000394536 NGEFQ8N5V2 710 aa20.34■□□□□ 0.85
PCDH1-203ENST00000394536 STAC3Q96MF2 364 aa20.34■□□□□ 0.85
PCDH1-203ENST00000394536 GOLGA6L22H0YM25 854 aa20.34■□□□□ 0.85
PCDH1-203ENST00000394536 MLECQ14165 292 aa20.34■□□□□ 0.85
PCDH1-203ENST00000394536 SCAPERQ9BY12 1400 aa20.33■□□□□ 0.85
PCDH1-203ENST00000394536 TNNQ9UQP3 1299 aa20.33■□□□□ 0.85
PCDH1-203ENST00000394536 FAM135AQ9P2D6 1515 aa20.33■□□□□ 0.85
PCDH1-203ENST00000394536 ANKRD45Q5TZF3 282 aa20.33■□□□□ 0.85
PCDH1-203ENST00000394536 EVC2Q86UK5 1308 aa20.32■□□□□ 0.84
PCDH1-203ENST00000394536 HDGFL2Q7Z4V5 671 aaPredicted RBP20.32■□□□□ 0.84
PCDH1-203ENST00000394536 C22orf23Q9BZE7 217 aa20.32■□□□□ 0.84
PCDH1-203ENST00000394536 PLEKHG5O94827 1062 aa20.31■□□□□ 0.84
PCDH1-203ENST00000394536 SEC24BO95487 1268 aa20.31■□□□□ 0.84
PCDH1-203ENST00000394536 RARSP54136 660 aaKnown RBP20.31■□□□□ 0.84
PCDH1-203ENST00000394536 TERF2IPQ9NYB0 399 aa20.3■□□□□ 0.84
PCDH1-203ENST00000394536 BCORL1Q5H9F3 1711 aa20.3■□□□□ 0.84
PCDH1-203ENST00000394536 LRRIQ1Q96JM4 1722 aa20.3■□□□□ 0.84
PCDH1-203ENST00000394536 TARBP1Q13395 1621 aaKnown RBP20.3■□□□□ 0.84
PCDH1-203ENST00000394536 ADGRL2O95490 1459 aa20.29■□□□□ 0.84
PCDH1-203ENST00000394536 PNNQ9H307 717 aaKnown RBP20.29■□□□□ 0.84
PCDH1-203ENST00000394536 CARD14Q9BXL6 1004 aa20.28■□□□□ 0.84
PCDH1-203ENST00000394536 NKTRP30414 1462 aaKnown RBP20.28■□□□□ 0.84
PCDH1-203ENST00000394536 ARHGEF12Q9NZN5 1544 aa20.27■□□□□ 0.84
PCDH1-203ENST00000394536 DDX19BQ9UMR2 479 aa20.27■□□□□ 0.84
PCDH1-203ENST00000394536 A2MP01023 1474 aa20.27■□□□□ 0.84
PCDH1-203ENST00000394536 VGFO15240 615 aaPredicted RBP20.27■□□□□ 0.84
PCDH1-203ENST00000394536 PCDHB15Q9Y5E8 787 aa20.27■□□□□ 0.84
PCDH1-203ENST00000394536 HMOX1P09601 288 aa20.27■□□□□ 0.83
PCDH1-203ENST00000394536 KDM5CP41229 1560 aa20.26■□□□□ 0.83
PCDH1-203ENST00000394536 ITSN2Q9NZM3 1697 aa20.25■□□□□ 0.83
PCDH1-203ENST00000394536 KDM2BQ8NHM5 1336 aa20.25■□□□□ 0.83
PCDH1-203ENST00000394536 NSD3Q9BZ95 1437 aa20.25■□□□□ 0.83
PCDH1-203ENST00000394536 SYCP2Q9BX26 1530 aa20.24■□□□□ 0.83
PCDH1-203ENST00000394536 PBRM1Q86U86 1689 aa20.24■□□□□ 0.83
PCDH1-203ENST00000394536 NUTM2FA1L443 756 aa20.24■□□□□ 0.83
PCDH1-203ENST00000394536 DIAPH1O60610 1272 aaKnown RBP20.24■□□□□ 0.83
PCDH1-203ENST00000394536 NOB1Q9ULX3 412 aaKnown RBP20.24■□□□□ 0.83
PCDH1-203ENST00000394536 RLBP1P12271 317 aa20.23■□□□□ 0.83
PCDH1-203ENST00000394536 C1orf115Q9H7X2 142 aa20.23■□□□□ 0.83
PCDH1-203ENST00000394536 CHMP5Q9NZZ3 219 aa20.23■□□□□ 0.83
PCDH1-203ENST00000394536 COL17A1Q9UMD9 1497 aaPredicted RBP20.23■□□□□ 0.83
PCDH1-203ENST00000394536 MVPQ14764 893 aaKnown RBP20.22■□□□□ 0.83
PCDH1-203ENST00000394536 GBP4Q96PP9 640 aa20.22■□□□□ 0.83
PCDH1-203ENST00000394536 MBD5Q9P267 1494 aa20.22■□□□□ 0.83
PCDH1-203ENST00000394536 WDR63Q8IWG1 891 aa20.21■□□□□ 0.83
PCDH1-203ENST00000394536 SCAF11Q99590 1463 aaKnown RBP20.2■□□□□ 0.82
PCDH1-203ENST00000394536 CHMP4BQ9H444 224 aaKnown RBP20.2■□□□□ 0.82
PCDH1-203ENST00000394536 TBC1D2Q9BYX2 928 aa20.2■□□□□ 0.82
Retrieved 100 of 20,778 RNA–protein pairs in 53.5 ms