RNA–Protein interactions for RNA: ENST00000381753.8

LIMCH1-202, Transcript of LIM and calponin homology domains 1, humanhuman

TSL 1 (best) BASIC

Gene LIMCH1, Length 5,705 nt, Biotype protein coding, Subcellular localisation Cytoplasm, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
LIMCH1-202ENST00000381753 WWC3Q9ULE0 1092 aa11.59□□□□□ -0.55
LIMCH1-202ENST00000381753 NCAPD3P42695 1498 aa11.59□□□□□ -0.55
LIMCH1-202ENST00000381753 TEX14Q8IWB6 1497 aa11.59□□□□□ -0.55
LIMCH1-202ENST00000381753 EXOC5O00471 708 aa11.59□□□□□ -0.55
LIMCH1-202ENST00000381753 CCDC27Q2M243 656 aa11.59□□□□□ -0.55
LIMCH1-202ENST00000381753 PHF14O94880 888 aa11.59□□□□□ -0.55
LIMCH1-202ENST00000381753 TOP2AP11388 1531 aaKnown RBP11.58□□□□□ -0.56
LIMCH1-202ENST00000381753 PLEKHO1Q53GL0 409 aaPredicted RBP11.58□□□□□ -0.56
LIMCH1-202ENST00000381753 IPO8O15397 1037 aaKnown RBP11.58□□□□□ -0.56
LIMCH1-202ENST00000381753 PLIN1O60240 522 aa11.58□□□□□ -0.56
LIMCH1-202ENST00000381753 BIN2Q9UBW5 565 aaPredicted RBP11.57□□□□□ -0.56
LIMCH1-202ENST00000381753 MAP3K9P80192 1104 aa11.57□□□□□ -0.56
LIMCH1-202ENST00000381753 ZNF622Q969S3 477 aaKnown RBP eCLIP11.57□□□□□ -0.56
LIMCH1-202ENST00000381753 FYB1O15117 783 aa11.57□□□□□ -0.56
LIMCH1-202ENST00000381753 SMARCA4P51532 1647 aa11.57□□□□□ -0.56
LIMCH1-202ENST00000381753 IBSPP21815 317 aaPredicted RBP11.57□□□□□ -0.56
LIMCH1-202ENST00000381753 MPHOSPH9Q99550 1183 aa11.56□□□□□ -0.56
LIMCH1-202ENST00000381753 BCL2L13Q9BXK5 485 aa11.56□□□□□ -0.56
LIMCH1-202ENST00000381753 C9orf78Q9NZ63 289 aaPredicted RBP11.56□□□□□ -0.56
LIMCH1-202ENST00000381753 CCDC136Q96JN2 1154 aa11.56□□□□□ -0.56
LIMCH1-202ENST00000381753 WWC1Q8IX03 1113 aa11.56□□□□□ -0.56
LIMCH1-202ENST00000381753 MCCP23508 829 aa11.55□□□□□ -0.56
LIMCH1-202ENST00000381753 AIMP1Q12904 312 aaKnown RBP11.55□□□□□ -0.56
LIMCH1-202ENST00000381753 TMEM132AQ24JP5 1023 aa11.55□□□□□ -0.56
LIMCH1-202ENST00000381753 NECTIN2Q92692 538 aa11.55□□□□□ -0.56
LIMCH1-202ENST00000381753 AIDAQ96BJ3 306 aa11.55□□□□□ -0.56
LIMCH1-202ENST00000381753 RIC3Q7Z5B4 369 aa11.55□□□□□ -0.56
LIMCH1-202ENST00000381753 ZSCAN29Q8IWY8 852 aaPredicted RBP11.55□□□□□ -0.56
LIMCH1-202ENST00000381753 RRP7AQ9Y3A4 280 aaKnown RBP11.55□□□□□ -0.56
LIMCH1-202ENST00000381753 R3HCC1Q9Y3T6 440 aaKnown RBP11.55□□□□□ -0.56
LIMCH1-202ENST00000381753 LMOD1P29536 600 aaPredicted RBP11.55□□□□□ -0.56
LIMCH1-202ENST00000381753 SYNJ1O43426 1573 aa11.55□□□□□ -0.56
LIMCH1-202ENST00000381753 WDR78Q5VTH9 848 aa11.54□□□□□ -0.56
LIMCH1-202ENST00000381753 IL27Q8NEV9 243 aa11.54□□□□□ -0.56
LIMCH1-202ENST00000381753 TFCP2L1Q9NZI6 479 aa11.54□□□□□ -0.56
LIMCH1-202ENST00000381753 CGNL1Q0VF96 1302 aa11.53□□□□□ -0.56
LIMCH1-202ENST00000381753 NCKAP5LQ9HCH0 1330 aa11.53□□□□□ -0.56
LIMCH1-202ENST00000381753 LRRFIP1Q32MZ4 808 aaKnown RBP11.53□□□□□ -0.56
LIMCH1-202ENST00000381753 SLC52A1Q9NWF4 448 aa11.53□□□□□ -0.56
LIMCH1-202ENST00000381753 ZNF652Q9Y2D9 606 aa11.53□□□□□ -0.56
LIMCH1-202ENST00000381753 APPP05067 770 aa11.52□□□□□ -0.56
LIMCH1-202ENST00000381753 ZNF772Q68DY9 489 aaPredicted RBP11.52□□□□□ -0.56
LIMCH1-202ENST00000381753 RXRBP28702 533 aa11.52□□□□□ -0.57
LIMCH1-202ENST00000381753 WDR70Q9NW82 654 aa11.52□□□□□ -0.57
LIMCH1-202ENST00000381753 NF2P35240 595 aa11.52□□□□□ -0.57
LIMCH1-202ENST00000381753 MIA2Q96PC5 1412 aa11.52□□□□□ -0.57
LIMCH1-202ENST00000381753 HSP90AB1P08238 724 aaKnown RBP11.52□□□□□ -0.57
LIMCH1-202ENST00000381753 AKAP17AQ02040 695 aaKnown RBP11.52□□□□□ -0.57
LIMCH1-202ENST00000381753 SIN3AQ96ST3 1273 aa11.52□□□□□ -0.57
LIMCH1-202ENST00000381753 RPGRQ92834 1020 aaKnown RBP11.51□□□□□ -0.57
LIMCH1-202ENST00000381753 CRBNQ96SW2 442 aa11.51□□□□□ -0.57
LIMCH1-202ENST00000381753 TMOD3Q9NYL9 352 aa11.51□□□□□ -0.57
LIMCH1-202ENST00000381753 RFC4P35249 363 aa11.51□□□□□ -0.57
LIMCH1-202ENST00000381753 LRRC59Q96AG4 307 aaKnown RBP11.51□□□□□ -0.57
LIMCH1-202ENST00000381753 TMEM132EQ6IEE7 984 aa11.51□□□□□ -0.57
LIMCH1-202ENST00000381753 CHMP4BP1P59074 171 aa11.51□□□□□ -0.57
LIMCH1-202ENST00000381753 FOXO3O43524 673 aa11.5□□□□□ -0.57
LIMCH1-202ENST00000381753 HMMRO75330 724 aa11.5□□□□□ -0.57
LIMCH1-202ENST00000381753 GOLGA6L4A6NEF3 574 aa11.5□□□□□ -0.57
LIMCH1-202ENST00000381753 MPHOSPH10O00566 681 aaKnown RBP11.5□□□□□ -0.57
LIMCH1-202ENST00000381753 ATP2B2Q01814 1243 aa11.49□□□□□ -0.57
LIMCH1-202ENST00000381753 PAF1Q8N7H5 531 aa11.49□□□□□ -0.57
LIMCH1-202ENST00000381753 KTN1Q86UP2 1357 aaKnown RBP11.49□□□□□ -0.57
LIMCH1-202ENST00000381753 RFX1P22670 979 aa11.49□□□□□ -0.57
LIMCH1-202ENST00000381753 WIZO95785 1651 aa11.49□□□□□ -0.57
LIMCH1-202ENST00000381753 SETD5Q9C0A6 1442 aa11.49□□□□□ -0.57
LIMCH1-202ENST00000381753 PDE4CQ08493 712 aa11.49□□□□□ -0.57
LIMCH1-202ENST00000381753 SYNE3Q6ZMZ3 975 aa11.48□□□□□ -0.57
LIMCH1-202ENST00000381753 GNL3LQ9NVN8 582 aaKnown RBP11.48□□□□□ -0.57
LIMCH1-202ENST00000381753 KRT28Q7Z3Y7 464 aa11.48□□□□□ -0.57
LIMCH1-202ENST00000381753 PRAM1Q96QH2 718 aa11.47□□□□□ -0.57
LIMCH1-202ENST00000381753 CABP2Q9NPB3 220 aa11.47□□□□□ -0.57
LIMCH1-202ENST00000381753 STARD3NLO95772 234 aa11.47□□□□□ -0.57
LIMCH1-202ENST00000381753 ZNF526Q8TF50 670 aaPredicted RBP11.47□□□□□ -0.57
LIMCH1-202ENST00000381753 PARP3Q9Y6F1 533 aa11.47□□□□□ -0.57
LIMCH1-202ENST00000381753 UHRF1BP1Q6BDS2 1440 aa11.47□□□□□ -0.57
LIMCH1-202ENST00000381753 VTI1AQ96AJ9 217 aa11.47□□□□□ -0.57
LIMCH1-202ENST00000381753 MTMR7Q9Y216 660 aa11.47□□□□□ -0.57
LIMCH1-202ENST00000381753 TRIM6-TRIM34B2RNG4 842 aa11.47□□□□□ -0.57
LIMCH1-202ENST00000381753 MPRIPQ6WCQ1 1025 aa11.47□□□□□ -0.57
LIMCH1-202ENST00000381753 PPM1FP49593 454 aaPredicted RBP11.46□□□□□ -0.57
LIMCH1-202ENST00000381753 ITPRIPQ8IWB1 547 aa11.46□□□□□ -0.57
LIMCH1-202ENST00000381753 USP21Q9UK80 565 aa11.46□□□□□ -0.57
LIMCH1-202ENST00000381753 KIF15Q9NS87 1388 aa11.46□□□□□ -0.57
LIMCH1-202ENST00000381753 ZNF710Q8N1W2 664 aa11.46□□□□□ -0.57
LIMCH1-202ENST00000381753 APBA3O96018 575 aa11.46□□□□□ -0.58
LIMCH1-202ENST00000381753 KIAA2012Q0VF49 1180 aa11.46□□□□□ -0.58
LIMCH1-202ENST00000381753 KCNH5Q8NCM2 988 aa11.46□□□□□ -0.58
LIMCH1-202ENST00000381753 ZNF408Q9H9D4 720 aa11.46□□□□□ -0.58
LIMCH1-202ENST00000381753 AMOTL2Q9Y2J4 779 aa11.46□□□□□ -0.58
LIMCH1-202ENST00000381753 ST5P78524 1137 aa11.45□□□□□ -0.58
LIMCH1-202ENST00000381753 ST20-MTHFSA0A0A6YYL1 179 aa11.45□□□□□ -0.58
LIMCH1-202ENST00000381753 MTHFSP49914 203 aa11.45□□□□□ -0.58
LIMCH1-202ENST00000381753 DENND4BO75064 1496 aaPredicted RBP11.45□□□□□ -0.58
LIMCH1-202ENST00000381753 CENPJQ9HC77 1338 aaPredicted RBP11.45□□□□□ -0.58
LIMCH1-202ENST00000381753 CNNM1Q9NRU3 951 aa11.45□□□□□ -0.58
LIMCH1-202ENST00000381753 MYO15BQ96JP2 1530 aa11.45□□□□□ -0.58
LIMCH1-202ENST00000381753 FAM135AQ9P2D6 1515 aa11.45□□□□□ -0.58
LIMCH1-202ENST00000381753 JDP2Q8WYK2 163 aa11.45□□□□□ -0.58
LIMCH1-202ENST00000381753 ELL2O00472 640 aaPredicted RBP11.44□□□□□ -0.58
Retrieved 100 of 20,778 RNA–protein pairs in 23.1 ms