RNA–Protein interactions for RNA: ENST00000373019.4

SF3A3-201, Transcript of splicing factor 3a subunit 3, humanhuman

APPRIS P1 TSL 1 (best) BASIC

Gene SF3A3, Length 3,673 nt, Biotype protein coding, Subcellular localisation Cytosol, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SF3A3-201ENST00000373019 E9PCH4 1651 aa12.16□□□□□ -0.46
SF3A3-201ENST00000373019 NLRP13Q86W25 1043 aa12.15□□□□□ -0.46
SF3A3-201ENST00000373019 CHMP4BQ9H444 224 aaKnown RBP12.15□□□□□ -0.46
SF3A3-201ENST00000373019 PDZRN4Q6ZMN7 1036 aaPredicted RBP12.15□□□□□ -0.46
SF3A3-201ENST00000373019 ASXL2Q76L83 1435 aa12.15□□□□□ -0.46
SF3A3-201ENST00000373019 PPP1R9BQ96SB3 815 aa12.15□□□□□ -0.46
SF3A3-201ENST00000373019 ARID3AQ99856 593 aa12.14□□□□□ -0.47
SF3A3-201ENST00000373019 ZMYM4Q5VZL5 1548 aa12.14□□□□□ -0.47
SF3A3-201ENST00000373019 PARD3Q8TEW0 1356 aa12.14□□□□□ -0.47
SF3A3-201ENST00000373019 RAPGEF6Q8TEU7 1601 aa12.14□□□□□ -0.47
SF3A3-201ENST00000373019 LRRIQ1Q96JM4 1722 aa12.14□□□□□ -0.47
SF3A3-201ENST00000373019 R3HCC1Q9Y3T6 440 aaKnown RBP12.14□□□□□ -0.47
SF3A3-201ENST00000373019 DUSP27Q5VZP5 1158 aa12.13□□□□□ -0.47
SF3A3-201ENST00000373019 ZNF692Q9BU19 519 aaPredicted RBP12.13□□□□□ -0.47
SF3A3-201ENST00000373019 CHMP5Q9NZZ3 219 aa12.13□□□□□ -0.47
SF3A3-201ENST00000373019 CANXP27824 592 aaKnown RBP12.12□□□□□ -0.47
SF3A3-201ENST00000373019 TMEM51Q9NW97 253 aa12.12□□□□□ -0.47
SF3A3-201ENST00000373019 INSRP06213 1382 aa12.12□□□□□ -0.47
SF3A3-201ENST00000373019 UQCRHLA0A096LP55 91 aa12.11□□□□□ -0.47
SF3A3-201ENST00000373019 UQCRHP07919 91 aa12.11□□□□□ -0.47
SF3A3-201ENST00000373019 CCDC173Q0VFZ6 552 aa12.11□□□□□ -0.47
SF3A3-201ENST00000373019 PPP4R3BQ5MIZ7 849 aa12.11□□□□□ -0.47
SF3A3-201ENST00000373019 ATP10BO94823 1461 aa12.11□□□□□ -0.47
SF3A3-201ENST00000373019 ADCY10Q96PN6 1610 aa12.11□□□□□ -0.47
SF3A3-201ENST00000373019 ABCA8O94911 1581 aa12.11□□□□□ -0.47
SF3A3-201ENST00000373019 EIF3AQ14152 1382 aaKnown RBP12.11□□□□□ -0.47
SF3A3-201ENST00000373019 MTERF4Q7Z6M4 381 aaKnown RBP12.1□□□□□ -0.47
SF3A3-201ENST00000373019 DDX11L8A8MPP1 907 aa12.1□□□□□ -0.47
SF3A3-201ENST00000373019 EIF2AK3Q9NZJ5 1116 aaKnown RBP12.1□□□□□ -0.47
SF3A3-201ENST00000373019 PLEKHH2Q8IVE3 1493 aa12.1□□□□□ -0.47
SF3A3-201ENST00000373019 KIF14Q15058 1648 aa12.1□□□□□ -0.47
SF3A3-201ENST00000373019 NUP153P49790 1475 aaKnown RBP12.09□□□□□ -0.47
SF3A3-201ENST00000373019 WDR7Q9Y4E6 1490 aa12.09□□□□□ -0.47
SF3A3-201ENST00000373019 EPRSP07814 1512 aaKnown RBP12.09□□□□□ -0.47
SF3A3-201ENST00000373019 DDIT3P35638 169 aa12.09□□□□□ -0.47
SF3A3-201ENST00000373019 CCDC94Q9BW85 323 aaPredicted RBP12.09□□□□□ -0.47
SF3A3-201ENST00000373019 TCOF1Q13428 1488 aaKnown RBP12.09□□□□□ -0.47
SF3A3-201ENST00000373019 DYNC1I1O14576 645 aa12.08□□□□□ -0.48
SF3A3-201ENST00000373019 IPO4Q8TEX9 1081 aaKnown RBP12.08□□□□□ -0.48
SF3A3-201ENST00000373019 MAPK8IP3Q9UPT6 1336 aa12.08□□□□□ -0.48
SF3A3-201ENST00000373019 MSNP26038 577 aaKnown RBP12.08□□□□□ -0.48
SF3A3-201ENST00000373019 TAF7LQ5H9L4 462 aa12.08□□□□□ -0.48
SF3A3-201ENST00000373019 RTEL1-TNFRSF6BF6WH68 1400 aa12.08□□□□□ -0.48
SF3A3-201ENST00000373019 ZNF500O60304 480 aaPredicted RBP12.08□□□□□ -0.48
SF3A3-201ENST00000373019 SUPT6HQ7KZ85 1726 aaKnown RBP12.08□□□□□ -0.48
SF3A3-201ENST00000373019 PLEKHH1Q9ULM0 1364 aa12.07□□□□□ -0.48
SF3A3-201ENST00000373019 CDK13Q14004 1512 aaKnown RBP12.07□□□□□ -0.48
SF3A3-201ENST00000373019 PER1O15534 1290 aaPredicted RBP12.07□□□□□ -0.48
SF3A3-201ENST00000373019 MLECQ14165 292 aa12.07□□□□□ -0.48
SF3A3-201ENST00000373019 EFCAB2Q5VUJ9 269 aa12.07□□□□□ -0.48
SF3A3-201ENST00000373019 ZNF521Q96K83 1311 aa12.06□□□□□ -0.48
SF3A3-201ENST00000373019 CD109Q6YHK3 1445 aa12.06□□□□□ -0.48
SF3A3-201ENST00000373019 XPCQ01831 940 aaPredicted RBP12.06□□□□□ -0.48
SF3A3-201ENST00000373019 NASPP49321 788 aaPredicted RBP12.05□□□□□ -0.48
SF3A3-201ENST00000373019 ZNF326Q5BKZ1 582 aaKnown RBP12.05□□□□□ -0.48
SF3A3-201ENST00000373019 CFDP1Q9UEE9 299 aaPredicted RBP12.05□□□□□ -0.48
SF3A3-201ENST00000373019 NOL7Q9UMY1 257 aaKnown RBP12.05□□□□□ -0.48
SF3A3-201ENST00000373019 ABCC10Q5T3U5 1492 aa12.05□□□□□ -0.48
SF3A3-201ENST00000373019 KIF20AO95235 890 aa12.05□□□□□ -0.48
SF3A3-201ENST00000373019 NCLP19338 710 aaKnown RBP12.05□□□□□ -0.48
SF3A3-201ENST00000373019 GOLGA6L2Q8N9W4 650 aaPredicted RBP12.05□□□□□ -0.48
SF3A3-201ENST00000373019 ZCCHC11Q5TAX3 1644 aaKnown RBP12.05□□□□□ -0.48
SF3A3-201ENST00000373019 NCOA3Q9Y6Q9 1424 aa12.05□□□□□ -0.48
SF3A3-201ENST00000373019 ZNF830Q96NB3 372 aaPredicted RBP12.05□□□□□ -0.48
SF3A3-201ENST00000373019 TROQ12816 1431 aaPredicted RBP12.04□□□□□ -0.48
SF3A3-201ENST00000373019 UPF2Q9HAU5 1272 aaKnown RBP12.04□□□□□ -0.48
SF3A3-201ENST00000373019 ST20-MTHFSA0A0A6YYL1 179 aa12.04□□□□□ -0.48
SF3A3-201ENST00000373019 TNPO1Q92973 898 aaKnown RBP12.04□□□□□ -0.48
SF3A3-201ENST00000373019 GTPBP4Q9BZE4 634 aaKnown RBP12.03□□□□□ -0.48
SF3A3-201ENST00000373019 HS1BP3Q53T59 392 aa12.03□□□□□ -0.48
SF3A3-201ENST00000373019 BCAR3O75815 825 aa12.02□□□□□ -0.48
SF3A3-201ENST00000373019 ADAMTS8Q9UP79 889 aa12.02□□□□□ -0.48
SF3A3-201ENST00000373019 MAGI3Q5TCQ9 1506 aa12.02□□□□□ -0.49
SF3A3-201ENST00000373019 SLC4A1APQ9BWU0 796 aaKnown RBP12.02□□□□□ -0.49
SF3A3-201ENST00000373019 RALGAPBQ86X10 1494 aa12.02□□□□□ -0.49
SF3A3-201ENST00000373019 VGLL3A8MV65 326 aa12.01□□□□□ -0.49
SF3A3-201ENST00000373019 TRMT2AQ8IZ69 625 aaKnown RBP12.01□□□□□ -0.49
SF3A3-201ENST00000373019 UHRF1BP1Q6BDS2 1440 aa12.01□□□□□ -0.49
SF3A3-201ENST00000373019 EHBP1L1Q8N3D4 1523 aa12.01□□□□□ -0.49
SF3A3-201ENST00000373019 ANP32BQ92688 251 aaKnown RBP12□□□□□ -0.49
SF3A3-201ENST00000373019 PDLIM2Q96JY6 352 aa12□□□□□ -0.49
SF3A3-201ENST00000373019 PANK3Q9H999 370 aa12□□□□□ -0.49
SF3A3-201ENST00000373019 LETM1O95202 739 aaPredicted RBP12□□□□□ -0.49
SF3A3-201ENST00000373019 JARID2Q92833 1246 aaPredicted RBP12□□□□□ -0.49
SF3A3-201ENST00000373019 CARD11Q9BXL7 1154 aa12□□□□□ -0.49
SF3A3-201ENST00000373019 ZMYM3Q14202 1370 aa12□□□□□ -0.49
SF3A3-201ENST00000373019 SLFN5Q08AF3 891 aa12□□□□□ -0.49
SF3A3-201ENST00000373019 SKOR2Q2VWA4 1001 aaPredicted RBP12□□□□□ -0.49
SF3A3-201ENST00000373019 GOLGA2Q08379 1002 aa11.99□□□□□ -0.49
SF3A3-201ENST00000373019 SASS6Q6UVJ0 657 aa11.99□□□□□ -0.49
SF3A3-201ENST00000373019 ZNF710Q8N1W2 664 aa11.99□□□□□ -0.49
SF3A3-201ENST00000373019 SPINK5Q9NQ38 1064 aaPredicted RBP11.99□□□□□ -0.49
SF3A3-201ENST00000373019 CLUAP1Q96AJ1 413 aa11.99□□□□□ -0.49
SF3A3-201ENST00000373019 IBTKQ9P2D0 1353 aaPredicted RBP11.99□□□□□ -0.49
SF3A3-201ENST00000373019 CBX1P83916 185 aa11.99□□□□□ -0.49
SF3A3-201ENST00000373019 C22orf23Q9BZE7 217 aa11.99□□□□□ -0.49
SF3A3-201ENST00000373019 ATP2B3Q16720 1220 aa11.98□□□□□ -0.49
SF3A3-201ENST00000373019 SENP3Q9H4L4 574 aaPredicted RBP11.98□□□□□ -0.49
SF3A3-201ENST00000373019 PZPP20742 1482 aa11.98□□□□□ -0.49
SF3A3-201ENST00000373019 RAB3GAP1Q15042 981 aa11.98□□□□□ -0.49
Retrieved 100 of 20,778 RNA–protein pairs in 50 ms