RNA–Protein interactions for RNA: ENST00000370225.3

ABCA4-201, Transcript of ATP binding cassette subfamily A member 4, humanhuman

APPRIS P1 TSL 1 (best) BASIC

Gene ABCA4, Length 7,309 nt, Biotype protein coding, Subcellular localisation Cytosol .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
ABCA4-201ENST00000370225 KIF15Q9NS87 1388 aa10.55□□□□□ -0.72
ABCA4-201ENST00000370225 UACAQ9BZF9 1416 aa10.55□□□□□ -0.72
ABCA4-201ENST00000370225 SYNE3Q6ZMZ3 975 aa10.54□□□□□ -0.72
ABCA4-201ENST00000370225 CNKSR2Q8WXI2 1034 aa10.54□□□□□ -0.72
ABCA4-201ENST00000370225 ZNF428Q96B54 188 aa10.54□□□□□ -0.72
ABCA4-201ENST00000370225 MTMR7Q9Y216 660 aa10.54□□□□□ -0.72
ABCA4-201ENST00000370225 CSPP1Q1MSJ5 1256 aa10.54□□□□□ -0.72
ABCA4-201ENST00000370225 DIAPH3Q9NSV4 1193 aa10.54□□□□□ -0.72
ABCA4-201ENST00000370225 RBM33Q96EV2 1170 aaKnown RBP10.54□□□□□ -0.72
ABCA4-201ENST00000370225 KDM4AO75164 1064 aa10.54□□□□□ -0.72
ABCA4-201ENST00000370225 NLRP2Q9NX02 1062 aa10.54□□□□□ -0.72
ABCA4-201ENST00000370225 FANCD2Q9BXW9 1451 aa10.54□□□□□ -0.72
ABCA4-201ENST00000370225 MYBBP1AQ9BQG0 1328 aaKnown RBP10.54□□□□□ -0.72
ABCA4-201ENST00000370225 TOP2AP11388 1531 aaKnown RBP10.53□□□□□ -0.72
ABCA4-201ENST00000370225 PTMSP20962 102 aa10.53□□□□□ -0.72
ABCA4-201ENST00000370225 KRI1Q8N9T8 703 aaKnown RBP10.53□□□□□ -0.72
ABCA4-201ENST00000370225 RIPK4P57078 832 aa10.53□□□□□ -0.72
ABCA4-201ENST00000370225 COG6Q9Y2V7 657 aa10.53□□□□□ -0.72
ABCA4-201ENST00000370225 DIAPH1O60610 1272 aaKnown RBP10.53□□□□□ -0.72
ABCA4-201ENST00000370225 IFIT2P09913 472 aaKnown RBP10.53□□□□□ -0.72
ABCA4-201ENST00000370225 ANO2Q9NQ90 1003 aa10.53□□□□□ -0.72
ABCA4-201ENST00000370225 SLC4A3P48751 1232 aa10.52□□□□□ -0.72
ABCA4-201ENST00000370225 NUTM2BA6NNL0 878 aaPredicted RBP10.52□□□□□ -0.73
ABCA4-201ENST00000370225 NUTM2EB1AL46 878 aaPredicted RBP10.52□□□□□ -0.73
ABCA4-201ENST00000370225 FKBP5Q13451 457 aaPredicted RBP10.52□□□□□ -0.73
ABCA4-201ENST00000370225 NUTM2AQ8IVF1 878 aaPredicted RBP10.52□□□□□ -0.73
ABCA4-201ENST00000370225 CCDC27Q2M243 656 aa10.52□□□□□ -0.73
ABCA4-201ENST00000370225 CABP2Q9NPB3 220 aa10.52□□□□□ -0.73
ABCA4-201ENST00000370225 STRN4Q9NRL3 753 aa10.52□□□□□ -0.73
ABCA4-201ENST00000370225 APAF1O14727 1248 aa10.51□□□□□ -0.73
ABCA4-201ENST00000370225 NFXL1Q6ZNB6 911 aa10.51□□□□□ -0.73
ABCA4-201ENST00000370225 RAPGEF4Q8WZA2 1011 aa10.51□□□□□ -0.73
ABCA4-201ENST00000370225 GOLGA6L3A6NEY3 463 aa10.51□□□□□ -0.73
ABCA4-201ENST00000370225 ZKSCAN2Q63HK3 967 aa10.51□□□□□ -0.73
ABCA4-201ENST00000370225 TSPYL4Q9UJ04 414 aa10.51□□□□□ -0.73
ABCA4-201ENST00000370225 TPM3P06753 285 aa10.51□□□□□ -0.73
ABCA4-201ENST00000370225 TMEM132EQ6IEE7 984 aa10.5□□□□□ -0.73
ABCA4-201ENST00000370225 KIF3AQ9Y496 699 aa10.5□□□□□ -0.73
ABCA4-201ENST00000370225 PCMTD1Q96MG8 357 aaPredicted RBP10.5□□□□□ -0.73
ABCA4-201ENST00000370225 CRBNQ96SW2 442 aa10.5□□□□□ -0.73
ABCA4-201ENST00000370225 RIC3Q7Z5B4 369 aa10.5□□□□□ -0.73
ABCA4-201ENST00000370225 NEUROD6Q96NK8 337 aa10.5□□□□□ -0.73
ABCA4-201ENST00000370225 ESCO1Q5FWF5 840 aa10.5□□□□□ -0.73
ABCA4-201ENST00000370225 DDX58O95786 925 aaKnown RBP10.49□□□□□ -0.73
ABCA4-201ENST00000370225 TRIM29Q14134 588 aa10.49□□□□□ -0.73
ABCA4-201ENST00000370225 USP47Q96K76 1375 aa10.49□□□□□ -0.73
ABCA4-201ENST00000370225 CCAR2Q8N163 923 aaKnown RBP10.49□□□□□ -0.73
ABCA4-201ENST00000370225 G3BP1Q13283 466 aaKnown RBP eCLIP10.49□□□□□ -0.73
ABCA4-201ENST00000370225 PIP4K2BP78356 416 aa10.49□□□□□ -0.73
ABCA4-201ENST00000370225 GGNBP2Q9H3C7 697 aa10.48□□□□□ -0.73
ABCA4-201ENST00000370225 RBM42Q9BTD8 480 aaKnown RBP10.48□□□□□ -0.73
ABCA4-201ENST00000370225 ZNF644Q9H582 1327 aaPredicted RBP10.48□□□□□ -0.73
ABCA4-201ENST00000370225 PHLDB1Q86UU1 1377 aa10.48□□□□□ -0.73
ABCA4-201ENST00000370225 E9PSI1 815 aa10.48□□□□□ -0.73
ABCA4-201ENST00000370225 TSR1Q2NL82 804 aaKnown RBP10.48□□□□□ -0.73
ABCA4-201ENST00000370225 EXOC6Q8TAG9 804 aa10.48□□□□□ -0.73
ABCA4-201ENST00000370225 RUSC2Q8N2Y8 1516 aa10.47□□□□□ -0.73
ABCA4-201ENST00000370225 DCAF8L1A6NGE4 600 aa10.47□□□□□ -0.73
ABCA4-201ENST00000370225 GOLGA6L1Q8N7Z2 621 aa10.47□□□□□ -0.73
ABCA4-201ENST00000370225 ABCF1Q8NE71 845 aaKnown RBP eCLIP10.47□□□□□ -0.73
ABCA4-201ENST00000370225 CPLX1O14810 134 aa10.47□□□□□ -0.73
ABCA4-201ENST00000370225 CCDC43Q96MW1 224 aaKnown RBP10.47□□□□□ -0.73
ABCA4-201ENST00000370225 TPM2P07951 284 aa10.47□□□□□ -0.73
ABCA4-201ENST00000370225 ERICH2A1L162 156 aa10.46□□□□□ -0.73
ABCA4-201ENST00000370225 PHF14O94880 888 aa10.46□□□□□ -0.73
ABCA4-201ENST00000370225 NLRP6P59044 892 aa10.46□□□□□ -0.73
ABCA4-201ENST00000370225 LRRFIP1Q32MZ4 808 aaKnown RBP10.46□□□□□ -0.73
ABCA4-201ENST00000370225 ABTB2Q8N961 1025 aa10.46□□□□□ -0.73
ABCA4-201ENST00000370225 TRDNQ13061 729 aa10.46□□□□□ -0.73
ABCA4-201ENST00000370225 WASHC4Q2M389 1173 aa10.46□□□□□ -0.73
ABCA4-201ENST00000370225 RAD54L2Q9Y4B4 1467 aa10.46□□□□□ -0.74
ABCA4-201ENST00000370225 GOLGA6L19H0YKK7 550 aa10.46□□□□□ -0.74
ABCA4-201ENST00000370225 IKQ13123 557 aaPredicted RBP10.46□□□□□ -0.74
ABCA4-201ENST00000370225 PDE3BQ13370 1112 aa10.45□□□□□ -0.74
ABCA4-201ENST00000370225 RUFY2Q8WXA3 655 aa10.45□□□□□ -0.74
ABCA4-201ENST00000370225 BECN2A8MW95 431 aa10.44□□□□□ -0.74
ABCA4-201ENST00000370225 IPO9Q96P70 1041 aaKnown RBP10.44□□□□□ -0.74
ABCA4-201ENST00000370225 ZKSCAN1P17029 563 aaPredicted RBP10.44□□□□□ -0.74
ABCA4-201ENST00000370225 PROSER2Q86WR7 435 aaPredicted RBP10.44□□□□□ -0.74
ABCA4-201ENST00000370225 CPLX2Q6PUV4 134 aaKnown RBP10.44□□□□□ -0.74
ABCA4-201ENST00000370225 STK11IPQ8N1F8 1099 aa10.44□□□□□ -0.74
ABCA4-201ENST00000370225 GAPVD1Q14C86 1478 aa10.43□□□□□ -0.74
ABCA4-201ENST00000370225 ATAD2BQ9ULI0 1458 aa10.43□□□□□ -0.74
ABCA4-201ENST00000370225 CENPQQ7L2Z9 268 aaPredicted RBP10.43□□□□□ -0.74
ABCA4-201ENST00000370225 DDX49Q9Y6V7 483 aaKnown RBP10.43□□□□□ -0.74
ABCA4-201ENST00000370225 ARHGAP5Q13017 1502 aa10.43□□□□□ -0.74
ABCA4-201ENST00000370225 AQRO60306 1485 aaKnown RBP eCLIP10.43□□□□□ -0.74
ABCA4-201ENST00000370225 DHX57Q6P158 1386 aaKnown RBP10.43□□□□□ -0.74
ABCA4-201ENST00000370225 RRP1P56182 461 aaKnown RBP10.43□□□□□ -0.74
ABCA4-201ENST00000370225 FAM161AQ3B820 660 aa10.43□□□□□ -0.74
ABCA4-201ENST00000370225 SF3B2Q13435 895 aaKnown RBP10.42□□□□□ -0.74
ABCA4-201ENST00000370225 ZNF592Q92610 1267 aa10.42□□□□□ -0.74
ABCA4-201ENST00000370225 TXNDC2Q86VQ3 553 aa10.42□□□□□ -0.74
ABCA4-201ENST00000370225 SMARCA4P51532 1647 aa10.42□□□□□ -0.74
ABCA4-201ENST00000370225 DZIP1LQ8IYY4 767 aaKnown RBP10.42□□□□□ -0.74
ABCA4-201ENST00000370225 DDX54Q8TDD1 881 aaKnown RBP10.42□□□□□ -0.74
ABCA4-201ENST00000370225 VPS37CA5D8V6 355 aaPredicted RBP10.41□□□□□ -0.74
ABCA4-201ENST00000370225 PATL2C9JE40 543 aaKnown RBP10.41□□□□□ -0.74
ABCA4-201ENST00000370225 BCL11BQ9C0K0 894 aaPredicted RBP10.41□□□□□ -0.74
ABCA4-201ENST00000370225 TPM1P09493 284 aa10.41□□□□□ -0.74
Retrieved 100 of 20,778 RNA–protein pairs in 7.5 ms