RNA–Protein interactions for RNA: ENST00000368020.5

USF1-202, Transcript of upstream transcription factor 1, humanhuman

APPRIS P1 TSL 1 (best) BASIC

Gene USF1, Length 1,717 nt, Biotype protein coding, Subcellular localisation Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
USF1-202ENST00000368020 PREX1Q8TCU6 1659 aa19.19■□□□□ 0.66
USF1-202ENST00000368020 CLTCL1P53675 1640 aa19.18■□□□□ 0.66
USF1-202ENST00000368020 NEFLP07196 543 aa19.18■□□□□ 0.66
USF1-202ENST00000368020 ERVK-7P63135 1459 aa19.18■□□□□ 0.66
USF1-202ENST00000368020 HNRNPUQ00839 825 aaKnown RBP eCLIP19.17■□□□□ 0.66
USF1-202ENST00000368020 MRS2Q9HD23 443 aa19.17■□□□□ 0.66
USF1-202ENST00000368020 SLC52A1Q9NWF4 448 aa19.17■□□□□ 0.66
USF1-202ENST00000368020 SPATA31D1Q6ZQQ2 1576 aa19.17■□□□□ 0.66
USF1-202ENST00000368020 KIF1BO60333 1816 aa19.16■□□□□ 0.66
USF1-202ENST00000368020 FBXO31Q5XUX0 539 aaPredicted RBP19.15■□□□□ 0.66
USF1-202ENST00000368020 SYNMO15061 1565 aa19.14■□□□□ 0.65
USF1-202ENST00000368020 PIK3C2BO00750 1634 aa19.14■□□□□ 0.65
USF1-202ENST00000368020 C3P01024 1663 aa19.13■□□□□ 0.65
USF1-202ENST00000368020 IQGAP1P46940 1657 aa19.13■□□□□ 0.65
USF1-202ENST00000368020 POLR3GLQ9BT43 218 aa19.11■□□□□ 0.65
USF1-202ENST00000368020 RIMS1Q86UR5 1692 aaKnown RBP19.11■□□□□ 0.65
USF1-202ENST00000368020 RALBP1Q15311 655 aa19.11■□□□□ 0.65
USF1-202ENST00000368020 MYOM2P54296 1465 aa19.1■□□□□ 0.65
USF1-202ENST00000368020 ZBED9Q6R2W3 1325 aa19.1■□□□□ 0.65
USF1-202ENST00000368020 UGGT1Q9NYU2 1555 aa19.09■□□□□ 0.65
USF1-202ENST00000368020 IDI1Q13907 227 aa19.09■□□□□ 0.65
USF1-202ENST00000368020 AEBP2Q6ZN18 517 aaPredicted RBP19.09■□□□□ 0.65
USF1-202ENST00000368020 TNRQ92752 1358 aa19.09■□□□□ 0.65
USF1-202ENST00000368020 SETD1BQ9UPS6 1966 aaKnown RBP19.09■□□□□ 0.65
USF1-202ENST00000368020 IFT172Q9UG01 1749 aa19.08■□□□□ 0.64
USF1-202ENST00000368020 SLC24A1O60721 1099 aa19.08■□□□□ 0.64
USF1-202ENST00000368020 CEBPAP49715 358 aaPredicted RBP19.08■□□□□ 0.64
USF1-202ENST00000368020 NBPF1Q3BBV0 1214 aa19.08■□□□□ 0.64
USF1-202ENST00000368020 TMF1P82094 1093 aa19.07■□□□□ 0.64
USF1-202ENST00000368020 EIF3AQ14152 1382 aaKnown RBP19.07■□□□□ 0.64
USF1-202ENST00000368020 SCAF11Q99590 1463 aaKnown RBP19.06■□□□□ 0.64
USF1-202ENST00000368020 BRD4O60885 1362 aaPredicted RBP19.05■□□□□ 0.64
USF1-202ENST00000368020 NLRP1Q9C000 1473 aa19.05■□□□□ 0.64
USF1-202ENST00000368020 ADGRB3O60242 1522 aa19.05■□□□□ 0.64
USF1-202ENST00000368020 FAM9BQ8IZU0 186 aa19.05■□□□□ 0.64
USF1-202ENST00000368020 PTPRMP28827 1452 aa19.05■□□□□ 0.64
USF1-202ENST00000368020 CCDC184Q52MB2 194 aa19.04■□□□□ 0.64
USF1-202ENST00000368020 CDCA8Q53HL2 280 aa19.04■□□□□ 0.64
USF1-202ENST00000368020 TESK2Q96S53 571 aa19.04■□□□□ 0.64
USF1-202ENST00000368020 MYBBP1AQ9BQG0 1328 aaKnown RBP19.04■□□□□ 0.64
USF1-202ENST00000368020 KDM5AP29375 1690 aaKnown RBP19.03■□□□□ 0.64
USF1-202ENST00000368020 RPGRIP1LQ68CZ1 1315 aa19.03■□□□□ 0.64
USF1-202ENST00000368020 FKBP8Q14318 412 aa19.03■□□□□ 0.64
USF1-202ENST00000368020 TMEM131LA2VDJ0 1609 aa19.02■□□□□ 0.63
USF1-202ENST00000368020 ERICH6BQ5W0A0 696 aa19■□□□□ 0.63
USF1-202ENST00000368020 TMC1Q8TDI8 760 aa19■□□□□ 0.63
USF1-202ENST00000368020 PARD3Q8TEW0 1356 aa18.99■□□□□ 0.63
USF1-202ENST00000368020 NRXN1Q9ULB1 1477 aa18.99■□□□□ 0.63
USF1-202ENST00000368020 KDM4FA0A1W2PPD8 638 aa18.99■□□□□ 0.63
USF1-202ENST00000368020 CHGAP10645 457 aaKnown RBP18.99■□□□□ 0.63
USF1-202ENST00000368020 DISP3Q9P2K9 1392 aa18.98■□□□□ 0.63
USF1-202ENST00000368020 A2ML1A8K2U0 1454 aa18.98■□□□□ 0.63
USF1-202ENST00000368020 STAG3Q9UJ98 1225 aa18.97■□□□□ 0.63
USF1-202ENST00000368020 SETBP1Q9Y6X0 1596 aa18.97■□□□□ 0.63
USF1-202ENST00000368020 NLRP13Q86W25 1043 aa18.96■□□□□ 0.63
USF1-202ENST00000368020 PPLO60437 1756 aa18.95■□□□□ 0.62
USF1-202ENST00000368020 MYO5BQ9ULV0 1848 aa18.95■□□□□ 0.62
USF1-202ENST00000368020 MYO3AQ8NEV4 1616 aa18.95■□□□□ 0.62
USF1-202ENST00000368020 PLPPR3Q6T4P5 718 aa18.94■□□□□ 0.62
USF1-202ENST00000368020 PNISRQ8TF01 805 aaKnown RBP18.94■□□□□ 0.62
USF1-202ENST00000368020 INSRP06213 1382 aa18.94■□□□□ 0.62
USF1-202ENST00000368020 LRPPRCP42704 1394 aaKnown RBP18.94■□□□□ 0.62
USF1-202ENST00000368020 UBR1Q8IWV7 1749 aa18.94■□□□□ 0.62
USF1-202ENST00000368020 ZFYVE9O95405 1425 aa18.94■□□□□ 0.62
USF1-202ENST00000368020 PER1O15534 1290 aaPredicted RBP18.93■□□□□ 0.62
USF1-202ENST00000368020 NEXMIFQ5QGS0 1516 aa18.92■□□□□ 0.62
USF1-202ENST00000368020 VGFO15240 615 aaPredicted RBP18.92■□□□□ 0.62
USF1-202ENST00000368020 HDGFP51858 240 aaKnown RBP18.91■□□□□ 0.62
USF1-202ENST00000368020 THEMISQ8N1K5 641 aaPredicted RBP18.91■□□□□ 0.62
USF1-202ENST00000368020 ZNF142P52746 1687 aaPredicted RBP18.91■□□□□ 0.62
USF1-202ENST00000368020 CEP170BQ9Y4F5 1589 aaPredicted RBP18.91■□□□□ 0.62
USF1-202ENST00000368020 SMG6Q86US8 1419 aaKnown RBP18.91■□□□□ 0.62
USF1-202ENST00000368020 TMEM2Q9UHN6 1383 aa18.9■□□□□ 0.62
USF1-202ENST00000368020 SBNO2Q9Y2G9 1366 aa18.9■□□□□ 0.62
USF1-202ENST00000368020 ABCF1Q8NE71 845 aaKnown RBP eCLIP18.89■□□□□ 0.61
USF1-202ENST00000368020 PANK3Q9H999 370 aa18.88■□□□□ 0.61
USF1-202ENST00000368020 RIMS2Q9UQ26 1411 aa18.87■□□□□ 0.61
USF1-202ENST00000368020 SLIT1O75093 1534 aa18.87■□□□□ 0.61
USF1-202ENST00000368020 MYOM1P52179 1685 aa18.87■□□□□ 0.61
USF1-202ENST00000368020 ARHGAP23Q9P227 1491 aa18.87■□□□□ 0.61
USF1-202ENST00000368020 ADGRF5Q8IZF2 1346 aa18.86■□□□□ 0.61
USF1-202ENST00000368020 NPC1L1Q9UHC9 1359 aa18.86■□□□□ 0.61
USF1-202ENST00000368020 PIK3C2GO75747 1445 aa18.85■□□□□ 0.61
USF1-202ENST00000368020 KNSTRNQ9Y448 316 aa18.83■□□□□ 0.61
USF1-202ENST00000368020 ASXL1Q8IXJ9 1541 aa18.83■□□□□ 0.6
USF1-202ENST00000368020 CNGB1Q14028 1251 aaPredicted RBP18.83■□□□□ 0.6
USF1-202ENST00000368020 NUDCQ9Y266 331 aa18.82■□□□□ 0.6
USF1-202ENST00000368020 EID1Q9Y6B2 187 aa18.82■□□□□ 0.6
USF1-202ENST00000368020 BCANQ96GW7 911 aa18.81■□□□□ 0.6
USF1-202ENST00000368020 CFAP70Q5T0N1 1121 aa18.8■□□□□ 0.6
USF1-202ENST00000368020 C14orf93Q9H972 538 aaKnown RBP18.8■□□□□ 0.6
USF1-202ENST00000368020 NUTM2DQ5VT03 806 aaPredicted RBP18.79■□□□□ 0.6
USF1-202ENST00000368020 TXNDC2Q86VQ3 553 aa18.79■□□□□ 0.6
USF1-202ENST00000368020 ADGRB1O14514 1584 aa18.78■□□□□ 0.6
USF1-202ENST00000368020 LTKP29376 864 aa18.78■□□□□ 0.6
USF1-202ENST00000368020 PDE3BQ13370 1112 aa18.78■□□□□ 0.6
USF1-202ENST00000368020 QRICH2Q9H0J4 1663 aa18.78■□□□□ 0.6
USF1-202ENST00000368020 PLEKHG1Q9ULL1 1385 aa18.77■□□□□ 0.6
USF1-202ENST00000368020 CC2D1BQ5T0F9 858 aaKnown RBP18.77■□□□□ 0.59
USF1-202ENST00000368020 ANKLE2Q86XL3 938 aa18.77■□□□□ 0.59
Retrieved 100 of 20,778 RNA–protein pairs in 32.2 ms