RNA–Protein interactions for RNA: ENST00000358808.6

CLIP1-202, Transcript of CAP-Gly domain containing linker protein 1, humanhuman

APPRIS P4 TSL 1 (best) BASIC

Gene CLIP1, Length 5,880 nt, Biotype protein coding, Subcellular localisation Cytosol, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CLIP1-202ENST00000358808 MCTP1Q6DN14 999 aa12.53□□□□□ -0.4
CLIP1-202ENST00000358808 NUTM2FA1L443 756 aa12.53□□□□□ -0.4
CLIP1-202ENST00000358808 ST18O60284 1047 aa12.53□□□□□ -0.4
CLIP1-202ENST00000358808 TRIM29Q14134 588 aa12.53□□□□□ -0.4
CLIP1-202ENST00000358808 SETD5Q9C0A6 1442 aa12.53□□□□□ -0.4
CLIP1-202ENST00000358808 GPS2Q13227 327 aa12.53□□□□□ -0.4
CLIP1-202ENST00000358808 RSPH4AQ5TD94 716 aa12.53□□□□□ -0.4
CLIP1-202ENST00000358808 TSHZ2Q9NRE2 1034 aa12.53□□□□□ -0.4
CLIP1-202ENST00000358808 TERF2IPQ9NYB0 399 aa12.53□□□□□ -0.4
CLIP1-202ENST00000358808 PRG4Q92954 1404 aaPredicted RBP12.53□□□□□ -0.4
CLIP1-202ENST00000358808 CUX1P39880 1505 aa12.53□□□□□ -0.4
CLIP1-202ENST00000358808 IPO7O95373 1038 aaKnown RBP12.52□□□□□ -0.4
CLIP1-202ENST00000358808 BECN2A8MW95 431 aa12.52□□□□□ -0.41
CLIP1-202ENST00000358808 C1orf141Q5JVX7 400 aa12.52□□□□□ -0.41
CLIP1-202ENST00000358808 NGEFQ8N5V2 710 aa12.52□□□□□ -0.41
CLIP1-202ENST00000358808 RILPL2Q969X0 211 aa12.52□□□□□ -0.41
CLIP1-202ENST00000358808 LMOD3Q0VAK6 560 aa12.51□□□□□ -0.41
CLIP1-202ENST00000358808 CHMP4CQ96CF2 233 aa12.51□□□□□ -0.41
CLIP1-202ENST00000358808 SYNJ1O43426 1573 aa12.5□□□□□ -0.41
CLIP1-202ENST00000358808 ANKRD20A12PQ8NF67 263 aa12.5□□□□□ -0.41
CLIP1-202ENST00000358808 SYTL4Q96C24 671 aaPredicted RBP12.5□□□□□ -0.41
CLIP1-202ENST00000358808 APPP05067 770 aa12.5□□□□□ -0.41
CLIP1-202ENST00000358808 HSPA5P11021 654 aaKnown RBP12.5□□□□□ -0.41
CLIP1-202ENST00000358808 SUGP2Q8IX01 1082 aaKnown RBP eCLIP12.5□□□□□ -0.41
CLIP1-202ENST00000358808 RUSC2Q8N2Y8 1516 aa12.49□□□□□ -0.41
CLIP1-202ENST00000358808 CLUAP1Q96AJ1 413 aa12.49□□□□□ -0.41
CLIP1-202ENST00000358808 ZFYVE27Q5T4F4 411 aa12.49□□□□□ -0.41
CLIP1-202ENST00000358808 LRRFIP1Q32MZ4 808 aaKnown RBP12.48□□□□□ -0.41
CLIP1-202ENST00000358808 CPLX2Q6PUV4 134 aaKnown RBP12.48□□□□□ -0.41
CLIP1-202ENST00000358808 MPHOSPH9Q99550 1183 aa12.48□□□□□ -0.41
CLIP1-202ENST00000358808 CCER2I3L3R5 266 aa12.48□□□□□ -0.41
CLIP1-202ENST00000358808 NAP1L1P55209 391 aaKnown RBP12.48□□□□□ -0.41
CLIP1-202ENST00000358808 TTC5Q8N0Z6 440 aa12.48□□□□□ -0.41
CLIP1-202ENST00000358808 FOXD4L6Q3SYB3 417 aaPredicted RBP12.48□□□□□ -0.41
CLIP1-202ENST00000358808 FOXD4L3Q6VB84 417 aaPredicted RBP12.48□□□□□ -0.41
CLIP1-202ENST00000358808 RCAN3Q9UKA8 241 aa12.48□□□□□ -0.41
CLIP1-202ENST00000358808 TMEM132AQ24JP5 1023 aa12.47□□□□□ -0.41
CLIP1-202ENST00000358808 ZFP91-CNTFA0A0A6YYC7 529 aaPredicted RBP12.47□□□□□ -0.41
CLIP1-202ENST00000358808 ZNF592Q92610 1267 aa12.47□□□□□ -0.41
CLIP1-202ENST00000358808 RBM33Q96EV2 1170 aaKnown RBP12.46□□□□□ -0.41
CLIP1-202ENST00000358808 WWC2Q6AWC2 1192 aa12.46□□□□□ -0.41
CLIP1-202ENST00000358808 CCDC146Q8IYE0 955 aa12.46□□□□□ -0.41
CLIP1-202ENST00000358808 NFXL1Q6ZNB6 911 aa12.46□□□□□ -0.42
CLIP1-202ENST00000358808 HSP90AB2PQ58FF8 381 aa12.45□□□□□ -0.42
CLIP1-202ENST00000358808 CCAR1Q8IX12 1150 aaKnown RBP12.45□□□□□ -0.42
CLIP1-202ENST00000358808 TIMELESSQ9UNS1 1208 aa12.45□□□□□ -0.42
CLIP1-202ENST00000358808 ERICH2A1L162 156 aa12.44□□□□□ -0.42
CLIP1-202ENST00000358808 CPLX1O14810 134 aa12.44□□□□□ -0.42
CLIP1-202ENST00000358808 NEXNQ0ZGT2 675 aa12.44□□□□□ -0.42
CLIP1-202ENST00000358808 DIAPH3Q9NSV4 1193 aa12.44□□□□□ -0.42
CLIP1-202ENST00000358808 SYNJ2O15056 1496 aa12.44□□□□□ -0.42
CLIP1-202ENST00000358808 CDR1P51861 262 aa12.44□□□□□ -0.42
CLIP1-202ENST00000358808 RUFY1Q96T51 708 aa12.44□□□□□ -0.42
CLIP1-202ENST00000358808 HOOK1Q9UJC3 728 aaKnown RBP12.44□□□□□ -0.42
CLIP1-202ENST00000358808 ATP6V1DQ9Y5K8 247 aa12.44□□□□□ -0.42
CLIP1-202ENST00000358808 MAGI1Q96QZ7 1491 aaPredicted RBP12.43□□□□□ -0.42
CLIP1-202ENST00000358808 KANK4Q5T7N3 995 aaPredicted RBP12.43□□□□□ -0.42
CLIP1-202ENST00000358808 ABCA10Q8WWZ4 1543 aa12.43□□□□□ -0.42
CLIP1-202ENST00000358808 EPS15P42566 896 aa12.42□□□□□ -0.42
CLIP1-202ENST00000358808 TRDNQ13061 729 aa12.42□□□□□ -0.42
CLIP1-202ENST00000358808 TRAK1Q9UPV9 953 aa12.42□□□□□ -0.42
CLIP1-202ENST00000358808 ANO2Q9NQ90 1003 aa12.42□□□□□ -0.42
CLIP1-202ENST00000358808 CENPJQ9HC77 1338 aaPredicted RBP12.42□□□□□ -0.42
CLIP1-202ENST00000358808 FYB1O15117 783 aa12.42□□□□□ -0.42
CLIP1-202ENST00000358808 TEFQ10587 303 aa12.42□□□□□ -0.42
CLIP1-202ENST00000358808 EIF2S2P20042 333 aaKnown RBP12.41□□□□□ -0.42
CLIP1-202ENST00000358808 RALBP1Q15311 655 aa12.41□□□□□ -0.42
CLIP1-202ENST00000358808 IKQ13123 557 aaPredicted RBP12.41□□□□□ -0.42
CLIP1-202ENST00000358808 AK7Q96M32 723 aa12.41□□□□□ -0.42
CLIP1-202ENST00000358808 ERICH3Q5RHP9 1530 aa12.41□□□□□ -0.42
CLIP1-202ENST00000358808 ZNF771Q7L3S4 317 aaPredicted RBP12.41□□□□□ -0.42
CLIP1-202ENST00000358808 HOMER1Q86YM7 354 aa12.41□□□□□ -0.42
CLIP1-202ENST00000358808 URB2Q14146 1524 aaKnown RBP12.41□□□□□ -0.42
CLIP1-202ENST00000358808 C9orf78Q9NZ63 289 aaPredicted RBP12.4□□□□□ -0.42
CLIP1-202ENST00000358808 CUL7Q14999 1698 aa12.4□□□□□ -0.42
CLIP1-202ENST00000358808 VSIG10Q8N0Z9 540 aa12.4□□□□□ -0.42
CLIP1-202ENST00000358808 RDXP35241 583 aaKnown RBP12.39□□□□□ -0.43
CLIP1-202ENST00000358808 MTMR7Q9Y216 660 aa12.39□□□□□ -0.43
CLIP1-202ENST00000358808 DDX11L8A8MPP1 907 aa12.39□□□□□ -0.43
CLIP1-202ENST00000358808 ELL2O00472 640 aaPredicted RBP12.39□□□□□ -0.43
CLIP1-202ENST00000358808 FOSBP53539 338 aa12.39□□□□□ -0.43
CLIP1-202ENST00000358808 RUFY2Q8WXA3 655 aa12.39□□□□□ -0.43
CLIP1-202ENST00000358808 SLC4A3P48751 1232 aa12.38□□□□□ -0.43
CLIP1-202ENST00000358808 IPO9Q96P70 1041 aaKnown RBP12.38□□□□□ -0.43
CLIP1-202ENST00000358808 IFIT2P09913 472 aaKnown RBP12.38□□□□□ -0.43
CLIP1-202ENST00000358808 CCDC27Q2M243 656 aa12.38□□□□□ -0.43
CLIP1-202ENST00000358808 KIF21BO75037 1637 aa12.38□□□□□ -0.43
CLIP1-202ENST00000358808 ANKRD45Q5TZF3 282 aa12.38□□□□□ -0.43
CLIP1-202ENST00000358808 OFD1O75665 1012 aa12.38□□□□□ -0.43
CLIP1-202ENST00000358808 TEX35Q5T0J7 233 aa12.37□□□□□ -0.43
CLIP1-202ENST00000358808 BICD2Q8TD16 824 aa12.37□□□□□ -0.43
CLIP1-202ENST00000358808 PPP1R1BQ9UD71 204 aaPredicted RBP12.37□□□□□ -0.43
CLIP1-202ENST00000358808 UACAQ9BZF9 1416 aa12.37□□□□□ -0.43
CLIP1-202ENST00000358808 EFCAB5A4FU69 1503 aa12.37□□□□□ -0.43
CLIP1-202ENST00000358808 ZKSCAN1P17029 563 aaPredicted RBP12.37□□□□□ -0.43
CLIP1-202ENST00000358808 DDX49Q9Y6V7 483 aaKnown RBP12.37□□□□□ -0.43
CLIP1-202ENST00000358808 CCDC173Q0VFZ6 552 aa12.37□□□□□ -0.43
CLIP1-202ENST00000358808 COG3Q96JB2 828 aa12.37□□□□□ -0.43
CLIP1-202ENST00000358808 VGFO15240 615 aaPredicted RBP12.36□□□□□ -0.43
CLIP1-202ENST00000358808 SAFBQ15424 915 aaKnown RBP eCLIP12.36□□□□□ -0.43
Retrieved 100 of 20,778 RNA–protein pairs in 78.7 ms