RNA–Protein interactions for RNA: ENST00000357806.11

CLN3-203, Transcript of CLN3, battenin, humanhuman

TSL 1 (best) BASIC

Gene CLN3, Length 1,469 nt, Biotype protein coding, Subcellular localisation Endoplasmic reticulum .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CLN3-203ENST00000357806 ZNF335Q9H4Z2 1342 aaPredicted RBP25.14■■□□□ 1.62
CLN3-203ENST00000357806 FOXD1Q16676 465 aa25.14■■□□□ 1.61
CLN3-203ENST00000357806 HDGFP51858 240 aaKnown RBP25.13■■□□□ 1.61
CLN3-203ENST00000357806 CPS1P31327 1500 aa25.12■■□□□ 1.61
CLN3-203ENST00000357806 CCDC144AA2RUR9 1427 aa25.12■■□□□ 1.61
CLN3-203ENST00000357806 PPLO60437 1756 aa25.12■■□□□ 1.61
CLN3-203ENST00000357806 NEXMIFQ5QGS0 1516 aa25.11■■□□□ 1.61
CLN3-203ENST00000357806 PPP1R15AO75807 674 aaPredicted RBP25.1■■□□□ 1.61
CLN3-203ENST00000357806 ABCF1Q8NE71 845 aaKnown RBP eCLIP25.1■■□□□ 1.61
CLN3-203ENST00000357806 CERKQ8TCT0 537 aa25.1■■□□□ 1.61
CLN3-203ENST00000357806 PLEKHG1Q9ULL1 1385 aa25.1■■□□□ 1.61
CLN3-203ENST00000357806 IQSEC2Q5JU85 1478 aa25.09■■□□□ 1.61
CLN3-203ENST00000357806 DIP2AQ14689 1571 aa25.08■■□□□ 1.61
CLN3-203ENST00000357806 IFT172Q9UG01 1749 aa25.08■■□□□ 1.6
CLN3-203ENST00000357806 ZNF326Q5BKZ1 582 aaKnown RBP25.07■■□□□ 1.6
CLN3-203ENST00000357806 CHD2O14647 1828 aaKnown RBP25.06■■□□□ 1.6
CLN3-203ENST00000357806 NRXN3Q9Y4C0 1643 aa25.05■■□□□ 1.6
CLN3-203ENST00000357806 SETBP1Q9Y6X0 1596 aa25.03■■□□□ 1.6
CLN3-203ENST00000357806 BCANQ96GW7 911 aa25.02■■□□□ 1.6
CLN3-203ENST00000357806 NWD1Q149M9 1564 aa25.02■■□□□ 1.6
CLN3-203ENST00000357806 TRIM26Q12899 539 aaPredicted RBP25.02■■□□□ 1.6
CLN3-203ENST00000357806 NUTM2DQ5VT03 806 aaPredicted RBP25.02■■□□□ 1.6
CLN3-203ENST00000357806 XIRP1Q702N8 1843 aaKnown RBP25■■□□□ 1.59
CLN3-203ENST00000357806 SLC26A8Q96RN1 970 aa24.99■■□□□ 1.59
CLN3-203ENST00000357806 SPATA31E1Q6ZUB1 1445 aa24.98■■□□□ 1.59
CLN3-203ENST00000357806 ADAMTS13Q76LX8 1427 aa24.97■■□□□ 1.59
CLN3-203ENST00000357806 FBXO41Q8TF61 875 aa24.96■■□□□ 1.59
CLN3-203ENST00000357806 SENP3Q9H4L4 574 aaPredicted RBP24.96■■□□□ 1.59
CLN3-203ENST00000357806 SETD1AO15047 1707 aaKnown RBP24.96■■□□□ 1.59
CLN3-203ENST00000357806 RPGRIP1LQ68CZ1 1315 aa24.95■■□□□ 1.59
CLN3-203ENST00000357806 ANKRD30BQ9BXX2 1392 aa24.95■■□□□ 1.58
CLN3-203ENST00000357806 LRRC7Q96NW7 1537 aa24.95■■□□□ 1.58
CLN3-203ENST00000357806 NKTRP30414 1462 aaKnown RBP24.94■■□□□ 1.58
CLN3-203ENST00000357806 TBX22Q9Y458 520 aa24.92■■□□□ 1.58
CLN3-203ENST00000357806 PIK3R4Q99570 1358 aa24.9■■□□□ 1.58
CLN3-203ENST00000357806 VGFO15240 615 aaPredicted RBP24.9■■□□□ 1.58
CLN3-203ENST00000357806 KCNA6P17658 529 aa24.89■■□□□ 1.58
CLN3-203ENST00000357806 ILDR1Q86SU0 546 aaPredicted RBP24.89■■□□□ 1.58
CLN3-203ENST00000357806 XRN1Q8IZH2 1706 aaKnown RBP24.89■■□□□ 1.58
CLN3-203ENST00000357806 RGL3Q3MIN7 710 aa24.88■■□□□ 1.57
CLN3-203ENST00000357806 ALKQ9UM73 1620 aa24.86■■□□□ 1.57
CLN3-203ENST00000357806 MYOM2P54296 1465 aa24.84■■□□□ 1.57
CLN3-203ENST00000357806 LAMC1P11047 1609 aa24.84■■□□□ 1.57
CLN3-203ENST00000357806 PTPRUQ92729 1446 aa24.8■■□□□ 1.56
CLN3-203ENST00000357806 TMEM94Q12767 1356 aa24.79■■□□□ 1.56
CLN3-203ENST00000357806 PIK3C2GO75747 1445 aa24.79■■□□□ 1.56
CLN3-203ENST00000357806 METP08581 1390 aa24.78■■□□□ 1.56
CLN3-203ENST00000357806 UBAP1LF5GYI3 381 aa24.78■■□□□ 1.56
CLN3-203ENST00000357806 ADGRF5Q8IZF2 1346 aa24.78■■□□□ 1.56
CLN3-203ENST00000357806 PROSER2Q86WR7 435 aaPredicted RBP24.77■■□□□ 1.56
CLN3-203ENST00000357806 NRXN1Q9ULB1 1477 aa24.77■■□□□ 1.56
CLN3-203ENST00000357806 KNDC1Q76NI1 1749 aa24.76■■□□□ 1.55
CLN3-203ENST00000357806 DHX57Q6P158 1386 aaKnown RBP24.75■■□□□ 1.55
CLN3-203ENST00000357806 AMOTL2Q9Y2J4 779 aa24.75■■□□□ 1.55
CLN3-203ENST00000357806 TOM1O60784 492 aa24.74■■□□□ 1.55
CLN3-203ENST00000357806 NCOA3Q9Y6Q9 1424 aa24.73■■□□□ 1.55
CLN3-203ENST00000357806 SIPA1L2Q9P2F8 1722 aaPredicted RBP24.73■■□□□ 1.55
CLN3-203ENST00000357806 ASXL1Q8IXJ9 1541 aa24.71■■□□□ 1.55
CLN3-203ENST00000357806 NALCNQ8IZF0 1738 aa24.71■■□□□ 1.55
CLN3-203ENST00000357806 MSH6P52701 1360 aa24.7■■□□□ 1.55
CLN3-203ENST00000357806 PRAG1Q86YV5 1406 aa24.7■■□□□ 1.55
CLN3-203ENST00000357806 RBM33Q96EV2 1170 aaKnown RBP24.7■■□□□ 1.54
CLN3-203ENST00000357806 PTCH1Q13635 1447 aa24.7■■□□□ 1.54
CLN3-203ENST00000357806 DCAF11Q8TEB1 546 aa24.66■■□□□ 1.54
CLN3-203ENST00000357806 STAC3Q96MF2 364 aa24.66■■□□□ 1.54
CLN3-203ENST00000357806 KIAA1210Q9ULL0 1709 aa24.65■■□□□ 1.54
CLN3-203ENST00000357806 SCAF1Q9H7N4 1312 aaKnown RBP24.65■■□□□ 1.54
CLN3-203ENST00000357806 PIP4K2BP78356 416 aa24.64■■□□□ 1.53
CLN3-203ENST00000357806 C14orf37Q86TY3 774 aa24.64■■□□□ 1.53
CLN3-203ENST00000357806 ROBO1Q9Y6N7 1651 aa24.63■■□□□ 1.53
CLN3-203ENST00000357806 C14orf93Q9H972 538 aaKnown RBP24.62■■□□□ 1.53
CLN3-203ENST00000357806 KDM2AQ9Y2K7 1162 aa24.62■■□□□ 1.53
CLN3-203ENST00000357806 TECPR2O15040 1411 aa24.61■■□□□ 1.53
CLN3-203ENST00000357806 DCCP43146 1447 aa24.6■■□□□ 1.53
CLN3-203ENST00000357806 PCGF6Q9BYE7 350 aa24.6■■□□□ 1.53
CLN3-203ENST00000357806 LRPPRCP42704 1394 aaKnown RBP24.6■■□□□ 1.53
CLN3-203ENST00000357806 ROBO2Q9HCK4 1378 aa24.6■■□□□ 1.53
CLN3-203ENST00000357806 YTHDC2Q9H6S0 1430 aaKnown RBP24.59■■□□□ 1.53
CLN3-203ENST00000357806 ADGRL3Q9HAR2 1447 aa24.59■■□□□ 1.53
CLN3-203ENST00000357806 ADGRB1O14514 1584 aa24.59■■□□□ 1.53
CLN3-203ENST00000357806 CFAP70Q5T0N1 1121 aa24.58■■□□□ 1.53
CLN3-203ENST00000357806 SIN3AQ96ST3 1273 aa24.58■■□□□ 1.52
CLN3-203ENST00000357806 C19orf44Q9H6X5 657 aa24.58■■□□□ 1.52
CLN3-203ENST00000357806 TMEM132EQ6IEE7 984 aa24.57■■□□□ 1.52
CLN3-203ENST00000357806 ABCC11Q96J66 1382 aa24.56■■□□□ 1.52
CLN3-203ENST00000357806 CADPS2Q86UW7 1296 aa24.54■■□□□ 1.52
CLN3-203ENST00000357806 ARHGEF28Q8N1W1 1705 aaKnown RBP24.53■■□□□ 1.52
CLN3-203ENST00000357806 ATF3P18847 181 aa24.53■■□□□ 1.52
CLN3-203ENST00000357806 NEUROD1Q13562 356 aa24.53■■□□□ 1.52
CLN3-203ENST00000357806 STK26Q9P289 416 aa24.53■■□□□ 1.52
CLN3-203ENST00000357806 DLC1Q96QB1 1528 aa24.53■■□□□ 1.52
CLN3-203ENST00000357806 CDC42BPGQ6DT37 1551 aa24.53■■□□□ 1.52
CLN3-203ENST00000357806 FAM135BQ49AJ0 1406 aa24.53■■□□□ 1.52
CLN3-203ENST00000357806 TRPM1Q7Z4N2 1603 aa24.5■■□□□ 1.51
CLN3-203ENST00000357806 PHLPP1O60346 1717 aa24.5■■□□□ 1.51
CLN3-203ENST00000357806 L3MBTL2Q969R5 705 aa24.49■■□□□ 1.51
CLN3-203ENST00000357806 SLAIN2Q9P270 581 aa24.49■■□□□ 1.51
CLN3-203ENST00000357806 MST1RQ04912 1400 aa24.47■■□□□ 1.51
CLN3-203ENST00000357806 FMN2Q9NZ56 1722 aa24.46■■□□□ 1.51
CLN3-203ENST00000357806 HSPA1LP34931 641 aa24.46■■□□□ 1.51
Retrieved 100 of 20,778 RNA–protein pairs in 14.8 ms