RNA–Protein interactions for RNA: ENST00000354241.5

TRIM4-202, Transcript of tripartite motif containing 4, humanhuman

TSL 1 (best) BASIC

Gene TRIM4, Length 1,942 nt, Biotype protein coding.

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
TRIM4-202ENST00000354241 RPGRIP1LQ68CZ1 1315 aa28.8■■■□□ 2.2
TRIM4-202ENST00000354241 KIAA1210Q9ULL0 1709 aa28.79■■■□□ 2.2
TRIM4-202ENST00000354241 FER1L4A9Z1Z3 1794 aa28.78■■■□□ 2.2
TRIM4-202ENST00000354241 POLR1AO95602 1720 aaPredicted RBP28.78■■■□□ 2.2
TRIM4-202ENST00000354241 WASHC2AQ641Q2 1341 aa28.77■■■□□ 2.2
TRIM4-202ENST00000354241 NRXN1Q9ULB1 1477 aa28.76■■■□□ 2.2
TRIM4-202ENST00000354241 NEXMIFQ5QGS0 1516 aa28.76■■■□□ 2.19
TRIM4-202ENST00000354241 C11orf95C9JLR9 678 aaPredicted RBP28.74■■■□□ 2.19
TRIM4-202ENST00000354241 MIER1Q8N108 512 aa28.73■■■□□ 2.19
TRIM4-202ENST00000354241 STAG3Q9UJ98 1225 aa28.73■■■□□ 2.19
TRIM4-202ENST00000354241 ST20-MTHFSA0A0A6YYL1 179 aa28.72■■■□□ 2.19
TRIM4-202ENST00000354241 CCDC7Q96M83 1385 aa28.71■■■□□ 2.19
TRIM4-202ENST00000354241 CFAP70Q5T0N1 1121 aa28.69■■■□□ 2.18
TRIM4-202ENST00000354241 NUTM2DQ5VT03 806 aaPredicted RBP28.69■■■□□ 2.18
TRIM4-202ENST00000354241 IQGAP1P46940 1657 aa28.69■■■□□ 2.18
TRIM4-202ENST00000354241 TNRQ92752 1358 aa28.69■■■□□ 2.18
TRIM4-202ENST00000354241 C3P01024 1663 aa28.69■■■□□ 2.18
TRIM4-202ENST00000354241 PIK3C2GO75747 1445 aa28.68■■■□□ 2.18
TRIM4-202ENST00000354241 VGFO15240 615 aaPredicted RBP28.67■■■□□ 2.18
TRIM4-202ENST00000354241 KIF7Q2M1P5 1343 aa28.66■■■□□ 2.18
TRIM4-202ENST00000354241 CEBPAP49715 358 aaPredicted RBP28.64■■■□□ 2.18
TRIM4-202ENST00000354241 A2ML1A8K2U0 1454 aa28.64■■■□□ 2.18
TRIM4-202ENST00000354241 SCAF11Q99590 1463 aaKnown RBP28.63■■■□□ 2.17
TRIM4-202ENST00000354241 ZFYVE9O95405 1425 aa28.61■■■□□ 2.17
TRIM4-202ENST00000354241 PLPPR3Q6T4P5 718 aa28.61■■■□□ 2.17
TRIM4-202ENST00000354241 SETBP1Q9Y6X0 1596 aa28.6■■■□□ 2.17
TRIM4-202ENST00000354241 POLR3GLQ9BT43 218 aa28.59■■■□□ 2.17
TRIM4-202ENST00000354241 C14orf93Q9H972 538 aaKnown RBP28.59■■■□□ 2.17
TRIM4-202ENST00000354241 RIMS1Q86UR5 1692 aaKnown RBP28.58■■■□□ 2.17
TRIM4-202ENST00000354241 EIF3AQ14152 1382 aaKnown RBP28.55■■■□□ 2.16
TRIM4-202ENST00000354241 RIMS2Q9UQ26 1411 aa28.55■■■□□ 2.16
TRIM4-202ENST00000354241 KDM5AP29375 1690 aaKnown RBP28.55■■■□□ 2.16
TRIM4-202ENST00000354241 UBR1Q8IWV7 1749 aa28.55■■■□□ 2.16
TRIM4-202ENST00000354241 NLRP1Q9C000 1473 aa28.53■■■□□ 2.16
TRIM4-202ENST00000354241 TESK2Q96S53 571 aa28.53■■■□□ 2.16
TRIM4-202ENST00000354241 SENP3Q9H4L4 574 aaPredicted RBP28.53■■■□□ 2.16
TRIM4-202ENST00000354241 ADGRB1O14514 1584 aa28.52■■■□□ 2.16
TRIM4-202ENST00000354241 ADAMTSL3P82987 1691 aa28.52■■■□□ 2.16
TRIM4-202ENST00000354241 TMEM132EQ6IEE7 984 aa28.49■■■□□ 2.15
TRIM4-202ENST00000354241 ANP32CO43423 234 aa28.47■■■□□ 2.15
TRIM4-202ENST00000354241 TMF1P82094 1093 aa28.47■■■□□ 2.15
TRIM4-202ENST00000354241 DISP3Q9P2K9 1392 aa28.47■■■□□ 2.15
TRIM4-202ENST00000354241 ABCF1Q8NE71 845 aaKnown RBP eCLIP28.45■■■□□ 2.15
TRIM4-202ENST00000354241 MYO3AQ8NEV4 1616 aa28.45■■■□□ 2.14
TRIM4-202ENST00000354241 TRAK1Q9UPV9 953 aa28.44■■■□□ 2.14
TRIM4-202ENST00000354241 ALKQ9UM73 1620 aa28.43■■■□□ 2.14
TRIM4-202ENST00000354241 ASXL1Q8IXJ9 1541 aa28.42■■■□□ 2.14
TRIM4-202ENST00000354241 HDGFP51858 240 aaKnown RBP28.41■■■□□ 2.14
TRIM4-202ENST00000354241 TMEM2Q9UHN6 1383 aa28.41■■■□□ 2.14
TRIM4-202ENST00000354241 ARHGEF28Q8N1W1 1705 aaKnown RBP28.39■■■□□ 2.14
TRIM4-202ENST00000354241 QRICH2Q9H0J4 1663 aa28.38■■■□□ 2.13
TRIM4-202ENST00000354241 CENPJQ9HC77 1338 aaPredicted RBP28.37■■■□□ 2.13
TRIM4-202ENST00000354241 NRXN3Q9Y4C0 1643 aa28.36■■■□□ 2.13
TRIM4-202ENST00000354241 SETD1AO15047 1707 aaKnown RBP28.36■■■□□ 2.13
TRIM4-202ENST00000354241 STK26Q9P289 416 aa28.33■■■□□ 2.13
TRIM4-202ENST00000354241 PTPRMP28827 1452 aa28.33■■■□□ 2.13
TRIM4-202ENST00000354241 SLC24A1O60721 1099 aa28.33■■■□□ 2.13
TRIM4-202ENST00000354241 CDCA8Q53HL2 280 aa28.32■■■□□ 2.12
TRIM4-202ENST00000354241 YTHDC2Q9H6S0 1430 aaKnown RBP28.32■■■□□ 2.12
TRIM4-202ENST00000354241 CEP170BQ9Y4F5 1589 aaPredicted RBP28.32■■■□□ 2.12
TRIM4-202ENST00000354241 BCANQ96GW7 911 aa28.31■■■□□ 2.12
TRIM4-202ENST00000354241 SBNO2Q9Y2G9 1366 aa28.31■■■□□ 2.12
TRIM4-202ENST00000354241 SLIT1O75093 1534 aa28.3■■■□□ 2.12
TRIM4-202ENST00000354241 THEMISQ8N1K5 641 aaPredicted RBP28.3■■■□□ 2.12
TRIM4-202ENST00000354241 ARHGAP23Q9P227 1491 aa28.28■■■□□ 2.12
TRIM4-202ENST00000354241 TXNDC2Q86VQ3 553 aa28.28■■■□□ 2.12
TRIM4-202ENST00000354241 EID1Q9Y6B2 187 aa28.28■■■□□ 2.12
TRIM4-202ENST00000354241 LTKP29376 864 aa28.27■■■□□ 2.12
TRIM4-202ENST00000354241 ZNF142P52746 1687 aaPredicted RBP28.25■■■□□ 2.11
TRIM4-202ENST00000354241 SETD1BQ9UPS6 1966 aaKnown RBP28.25■■■□□ 2.11
TRIM4-202ENST00000354241 PLEKHG1Q9ULL1 1385 aa28.25■■■□□ 2.11
TRIM4-202ENST00000354241 CCER2I3L3R5 266 aa28.24■■■□□ 2.11
TRIM4-202ENST00000354241 YTHDC1Q96MU7 727 aaKnown RBP28.23■■■□□ 2.11
TRIM4-202ENST00000354241 MYOM1P52179 1685 aa28.22■■■□□ 2.11
TRIM4-202ENST00000354241 SAFB2Q14151 953 aaKnown RBP eCLIP28.22■■■□□ 2.11
TRIM4-202ENST00000354241 PRKRIP1Q9H875 184 aaPredicted RBP28.22■■■□□ 2.11
TRIM4-202ENST00000354241 LRPPRCP42704 1394 aaKnown RBP28.21■■■□□ 2.11
TRIM4-202ENST00000354241 METP08581 1390 aa28.21■■■□□ 2.11
TRIM4-202ENST00000354241 PRAM1Q96QH2 718 aa28.2■■■□□ 2.1
TRIM4-202ENST00000354241 POGKQ9P215 609 aa28.2■■■□□ 2.1
TRIM4-202ENST00000354241 ADAMTS13Q76LX8 1427 aa28.19■■■□□ 2.1
TRIM4-202ENST00000354241 CNGB1Q14028 1251 aaPredicted RBP28.19■■■□□ 2.1
TRIM4-202ENST00000354241 DLC1Q96QB1 1528 aa28.19■■■□□ 2.1
TRIM4-202ENST00000354241 PANK3Q9H999 370 aa28.18■■■□□ 2.1
TRIM4-202ENST00000354241 KNDC1Q76NI1 1749 aa28.15■■■□□ 2.1
TRIM4-202ENST00000354241 ABCC11Q96J66 1382 aa28.15■■■□□ 2.1
TRIM4-202ENST00000354241 TULP4Q9NRJ4 1543 aa28.15■■■□□ 2.1
TRIM4-202ENST00000354241 EVC2Q86UK5 1308 aa28.15■■■□□ 2.1
TRIM4-202ENST00000354241 PER1O15534 1290 aaPredicted RBP28.12■■■□□ 2.09
TRIM4-202ENST00000354241 SLC26A8Q96RN1 970 aa28.12■■■□□ 2.09
TRIM4-202ENST00000354241 MINK1Q8N4C8 1332 aaPredicted RBP28.11■■■□□ 2.09
TRIM4-202ENST00000354241 MED14O60244 1454 aa28.11■■■□□ 2.09
TRIM4-202ENST00000354241 WAPLQ7Z5K2 1190 aa28.09■■■□□ 2.09
TRIM4-202ENST00000354241 PLEKHH1Q9ULM0 1364 aa28.08■■■□□ 2.09
TRIM4-202ENST00000354241 DIP2AQ14689 1571 aa28.08■■■□□ 2.09
TRIM4-202ENST00000354241 CPS1P31327 1500 aa28.08■■■□□ 2.08
TRIM4-202ENST00000354241 TECPR2O15040 1411 aa28.07■■■□□ 2.08
TRIM4-202ENST00000354241 ANKLE2Q86XL3 938 aa28.05■■■□□ 2.08
TRIM4-202ENST00000354241 PUS7Q96PZ0 661 aaKnown RBP28.05■■■□□ 2.08
TRIM4-202ENST00000354241 CABP2Q9NPB3 220 aa28.05■■■□□ 2.08
Retrieved 100 of 20,778 RNA–protein pairs in 248.9 ms