RNA–Protein interactions for RNA: ENST00000347617.10

HMGA1-202, Transcript of high mobility group AT-hook 1, humanhuman

APPRIS ALT1 TSL 1 (best) BASIC

Gene HMGA1, Length 1,773 nt, Biotype protein coding, Subcellular localisation Cytosol, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
HMGA1-202ENST00000347617 KDM2AQ9Y2K7 1162 aa21.18■□□□□ 0.98
HMGA1-202ENST00000347617 GPRASP1Q5JY77 1395 aa21.18■□□□□ 0.98
HMGA1-202ENST00000347617 TSPOAP1O95153 1857 aa21.18■□□□□ 0.98
HMGA1-202ENST00000347617 ARHGAP31Q2M1Z3 1444 aa21.18■□□□□ 0.98
HMGA1-202ENST00000347617 ABCC3O15438 1527 aa21.18■□□□□ 0.98
HMGA1-202ENST00000347617 CLTCL1P53675 1640 aa21.17■□□□□ 0.98
HMGA1-202ENST00000347617 RGL3Q3MIN7 710 aa21.17■□□□□ 0.98
HMGA1-202ENST00000347617 GGT6Q6P531 493 aa21.17■□□□□ 0.98
HMGA1-202ENST00000347617 USP47Q96K76 1375 aa21.17■□□□□ 0.98
HMGA1-202ENST00000347617 ZC3H13Q5T200 1668 aaKnown RBP21.17■□□□□ 0.98
HMGA1-202ENST00000347617 LAMC1P11047 1609 aa21.16■□□□□ 0.98
HMGA1-202ENST00000347617 TCERG1O14776 1098 aaKnown RBP21.16■□□□□ 0.98
HMGA1-202ENST00000347617 WASHC2CQ9Y4E1 1318 aa21.16■□□□□ 0.98
HMGA1-202ENST00000347617 AGLP35573 1532 aa21.16■□□□□ 0.98
HMGA1-202ENST00000347617 TRPM1Q7Z4N2 1603 aa21.16■□□□□ 0.98
HMGA1-202ENST00000347617 ZNF326Q5BKZ1 582 aaKnown RBP21.15■□□□□ 0.98
HMGA1-202ENST00000347617 CARD11Q9BXL7 1154 aa21.15■□□□□ 0.98
HMGA1-202ENST00000347617 NPATQ14207 1427 aa21.14■□□□□ 0.97
HMGA1-202ENST00000347617 MS4A1P11836 297 aa21.13■□□□□ 0.97
HMGA1-202ENST00000347617 CAMSAP1Q5T5Y3 1602 aa21.1■□□□□ 0.97
HMGA1-202ENST00000347617 NOS1P29475 1434 aa21.1■□□□□ 0.97
HMGA1-202ENST00000347617 KIF1BO60333 1816 aa21.09■□□□□ 0.97
HMGA1-202ENST00000347617 PPM1GO15355 546 aaPredicted RBP21.09■□□□□ 0.97
HMGA1-202ENST00000347617 LRPPRCP42704 1394 aaKnown RBP21.09■□□□□ 0.97
HMGA1-202ENST00000347617 BRD4O60885 1362 aaPredicted RBP21.08■□□□□ 0.97
HMGA1-202ENST00000347617 PNISRQ8TF01 805 aaKnown RBP21.07■□□□□ 0.96
HMGA1-202ENST00000347617 MYOM2P54296 1465 aa21.06■□□□□ 0.96
HMGA1-202ENST00000347617 PRKCSHP14314 528 aaPredicted RBP21.06■□□□□ 0.96
HMGA1-202ENST00000347617 COL17A1Q9UMD9 1497 aaPredicted RBP21.06■□□□□ 0.96
HMGA1-202ENST00000347617 MADDQ8WXG6 1647 aa21.05■□□□□ 0.96
HMGA1-202ENST00000347617 RPGRIP1LQ68CZ1 1315 aa21.05■□□□□ 0.96
HMGA1-202ENST00000347617 KIAA1210Q9ULL0 1709 aa21.04■□□□□ 0.96
HMGA1-202ENST00000347617 PDE3BQ13370 1112 aa21.04■□□□□ 0.96
HMGA1-202ENST00000347617 ADGRB3O60242 1522 aa21.03■□□□□ 0.96
HMGA1-202ENST00000347617 INSRP06213 1382 aa21.02■□□□□ 0.96
HMGA1-202ENST00000347617 ARHGEF40Q8TER5 1519 aa21.02■□□□□ 0.96
HMGA1-202ENST00000347617 PIK3C2BO00750 1634 aa21.01■□□□□ 0.95
HMGA1-202ENST00000347617 RRP1P56182 461 aaKnown RBP21.01■□□□□ 0.95
HMGA1-202ENST00000347617 RALBP1Q15311 655 aa21.01■□□□□ 0.95
HMGA1-202ENST00000347617 NBPF1Q3BBV0 1214 aa21.01■□□□□ 0.95
HMGA1-202ENST00000347617 TMC1Q8TDI8 760 aa21.01■□□□□ 0.95
HMGA1-202ENST00000347617 SLC52A1Q9NWF4 448 aa21.01■□□□□ 0.95
HMGA1-202ENST00000347617 ST20-MTHFSA0A0A6YYL1 179 aa21■□□□□ 0.95
HMGA1-202ENST00000347617 DDRGK1Q96HY6 314 aa21■□□□□ 0.95
HMGA1-202ENST00000347617 NRXN1Q9ULB1 1477 aa21■□□□□ 0.95
HMGA1-202ENST00000347617 IFT172Q9UG01 1749 aa21■□□□□ 0.95
HMGA1-202ENST00000347617 UGGT1Q9NYU2 1555 aa21■□□□□ 0.95
HMGA1-202ENST00000347617 MYBBP1AQ9BQG0 1328 aaKnown RBP20.98■□□□□ 0.95
HMGA1-202ENST00000347617 SIGLEC1Q9BZZ2 1709 aa20.97■□□□□ 0.95
HMGA1-202ENST00000347617 BACH2Q9BYV9 841 aa20.96■□□□□ 0.95
HMGA1-202ENST00000347617 SYNMO15061 1565 aa20.96■□□□□ 0.95
HMGA1-202ENST00000347617 PDE4AP27815 886 aa20.95■□□□□ 0.94
HMGA1-202ENST00000347617 SLC24A1O60721 1099 aa20.95■□□□□ 0.94
HMGA1-202ENST00000347617 MROH2AA6NES4 1674 aa20.94■□□□□ 0.94
HMGA1-202ENST00000347617 SCAF11Q99590 1463 aaKnown RBP20.92■□□□□ 0.94
HMGA1-202ENST00000347617 PREX1Q8TCU6 1659 aa20.92■□□□□ 0.94
HMGA1-202ENST00000347617 CFAP65Q6ZU64 1925 aaKnown RBP20.92■□□□□ 0.94
HMGA1-202ENST00000347617 NEFMP07197 916 aa20.92■□□□□ 0.94
HMGA1-202ENST00000347617 RCAN3Q9UKA8 241 aa20.92■□□□□ 0.94
HMGA1-202ENST00000347617 TESK2Q96S53 571 aa20.91■□□□□ 0.94
HMGA1-202ENST00000347617 IQGAP1P46940 1657 aa20.91■□□□□ 0.94
HMGA1-202ENST00000347617 PPLO60437 1756 aa20.91■□□□□ 0.94
HMGA1-202ENST00000347617 ZFYVE9O95405 1425 aa20.9■□□□□ 0.94
HMGA1-202ENST00000347617 IDI1Q13907 227 aa20.89■□□□□ 0.93
HMGA1-202ENST00000347617 ADGRF5Q8IZF2 1346 aa20.89■□□□□ 0.93
HMGA1-202ENST00000347617 SETBP1Q9Y6X0 1596 aa20.89■□□□□ 0.93
HMGA1-202ENST00000347617 VGFO15240 615 aaPredicted RBP20.88■□□□□ 0.93
HMGA1-202ENST00000347617 ERVK-7P63135 1459 aa20.88■□□□□ 0.93
HMGA1-202ENST00000347617 EIF3AQ14152 1382 aaKnown RBP20.87■□□□□ 0.93
HMGA1-202ENST00000347617 EXOC6Q8TAG9 804 aa20.87■□□□□ 0.93
HMGA1-202ENST00000347617 PIK3C2GO75747 1445 aa20.86■□□□□ 0.93
HMGA1-202ENST00000347617 CHGAP10645 457 aaKnown RBP20.86■□□□□ 0.93
HMGA1-202ENST00000347617 TMF1P82094 1093 aa20.86■□□□□ 0.93
HMGA1-202ENST00000347617 C14orf93Q9H972 538 aaKnown RBP20.86■□□□□ 0.93
HMGA1-202ENST00000347617 SPATA31D1Q6ZQQ2 1576 aa20.85■□□□□ 0.93
HMGA1-202ENST00000347617 NLRP13Q86W25 1043 aa20.84■□□□□ 0.93
HMGA1-202ENST00000347617 CLTCQ00610 1675 aaKnown RBP20.84■□□□□ 0.93
HMGA1-202ENST00000347617 CDCA8Q53HL2 280 aa20.83■□□□□ 0.93
HMGA1-202ENST00000347617 CFAP70Q5T0N1 1121 aa20.83■□□□□ 0.93
HMGA1-202ENST00000347617 NPM2Q86SE8 214 aaKnown RBP20.83■□□□□ 0.93
HMGA1-202ENST00000347617 TMEM131LA2VDJ0 1609 aa20.83■□□□□ 0.93
HMGA1-202ENST00000347617 NEXMIFQ5QGS0 1516 aa20.83■□□□□ 0.92
HMGA1-202ENST00000347617 ANO8Q9HCE9 1232 aaPredicted RBP20.82■□□□□ 0.92
HMGA1-202ENST00000347617 PARD3Q8TEW0 1356 aa20.82■□□□□ 0.92
HMGA1-202ENST00000347617 IL27Q8NEV9 243 aa20.8■□□□□ 0.92
HMGA1-202ENST00000347617 POLR3GLQ9BT43 218 aa20.8■□□□□ 0.92
HMGA1-202ENST00000347617 ESF1Q9H501 851 aaKnown RBP20.8■□□□□ 0.92
HMGA1-202ENST00000347617 ZMYM3Q14202 1370 aa20.79■□□□□ 0.92
HMGA1-202ENST00000347617 SBNO2Q9Y2G9 1366 aa20.79■□□□□ 0.92
HMGA1-202ENST00000347617 FBXO31Q5XUX0 539 aaPredicted RBP20.79■□□□□ 0.92
HMGA1-202ENST00000347617 BLMP54132 1417 aaPredicted RBP20.78■□□□□ 0.92
HMGA1-202ENST00000347617 SALL2Q9Y467 1007 aaPredicted RBP20.77■□□□□ 0.92
HMGA1-202ENST00000347617 LAS1LQ9Y4W2 734 aaKnown RBP20.77■□□□□ 0.92
HMGA1-202ENST00000347617 DISP3Q9P2K9 1392 aa20.77■□□□□ 0.92
HMGA1-202ENST00000347617 GSE1Q14687 1217 aa20.77■□□□□ 0.91
HMGA1-202ENST00000347617 MYO3AQ8NEV4 1616 aa20.76■□□□□ 0.91
HMGA1-202ENST00000347617 ADGRB1O14514 1584 aa20.75■□□□□ 0.91
HMGA1-202ENST00000347617 TRHP20396 242 aaPredicted RBP20.74■□□□□ 0.91
HMGA1-202ENST00000347617 MLECQ14165 292 aa20.74■□□□□ 0.91
HMGA1-202ENST00000347617 PER1O15534 1290 aaPredicted RBP20.71■□□□□ 0.91
Retrieved 100 of 20,778 RNA–protein pairs in 34.1 ms