RNA–Protein interactions for RNA: ENST00000337331.9

NPHP3-201, Transcript of nephrocystin 3, humanhuman

APPRIS P1 TSL 1 (best) BASIC

Gene NPHP3, Length 4,362 nt, Biotype protein coding.

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
NPHP3-201ENST00000337331 CCDC173Q0VFZ6 552 aa19.84■□□□□ 0.77
NPHP3-201ENST00000337331 CGNL1Q0VF96 1302 aa19.83■□□□□ 0.77
NPHP3-201ENST00000337331 NRDCO43847 1150 aa19.83■□□□□ 0.76
NPHP3-201ENST00000337331 AQRO60306 1485 aaKnown RBP eCLIP19.83■□□□□ 0.76
NPHP3-201ENST00000337331 CBX1P83916 185 aa19.82■□□□□ 0.76
NPHP3-201ENST00000337331 NUTM2FA1L443 756 aa19.82■□□□□ 0.76
NPHP3-201ENST00000337331 HMMRO75330 724 aa19.81■□□□□ 0.76
NPHP3-201ENST00000337331 GAPVD1Q14C86 1478 aa19.81■□□□□ 0.76
NPHP3-201ENST00000337331 TOPBP1Q92547 1522 aa19.81■□□□□ 0.76
NPHP3-201ENST00000337331 BCL11BQ9C0K0 894 aaPredicted RBP19.81■□□□□ 0.76
NPHP3-201ENST00000337331 PTPRGP23470 1445 aa19.81■□□□□ 0.76
NPHP3-201ENST00000337331 TRIM6-TRIM34B2RNG4 842 aa19.81■□□□□ 0.76
NPHP3-201ENST00000337331 PDIA4P13667 645 aaKnown RBP19.8■□□□□ 0.76
NPHP3-201ENST00000337331 AAMPQ13685 434 aa19.8■□□□□ 0.76
NPHP3-201ENST00000337331 ZKSCAN2Q63HK3 967 aa19.8■□□□□ 0.76
NPHP3-201ENST00000337331 GOLGA6L6A8MZA4 724 aa19.8■□□□□ 0.76
NPHP3-201ENST00000337331 C20orf194Q5TEA3 1177 aa19.8■□□□□ 0.76
NPHP3-201ENST00000337331 DRC7Q8IY82 874 aa19.79■□□□□ 0.76
NPHP3-201ENST00000337331 XPCQ01831 940 aaPredicted RBP19.79■□□□□ 0.76
NPHP3-201ENST00000337331 C22orf23Q9BZE7 217 aa19.79■□□□□ 0.76
NPHP3-201ENST00000337331 FOXD4L5Q5VV16 416 aaPredicted RBP19.78■□□□□ 0.76
NPHP3-201ENST00000337331 FOXD4L4Q8WXT5 416 aaPredicted RBP19.78■□□□□ 0.76
NPHP3-201ENST00000337331 NOL8Q76FK4 1167 aaKnown RBP19.78■□□□□ 0.76
NPHP3-201ENST00000337331 TOP2BQ02880 1626 aa19.78■□□□□ 0.76
NPHP3-201ENST00000337331 LMOD3Q0VAK6 560 aa19.77■□□□□ 0.76
NPHP3-201ENST00000337331 PLCD3Q8N3E9 789 aa19.77■□□□□ 0.76
NPHP3-201ENST00000337331 ISY1Q9ULR0 285 aaKnown RBP19.77■□□□□ 0.76
NPHP3-201ENST00000337331 ANKRD45Q5TZF3 282 aa19.76■□□□□ 0.75
NPHP3-201ENST00000337331 MPNDQ8N594 471 aa19.76■□□□□ 0.75
NPHP3-201ENST00000337331 POLA1P09884 1462 aaPredicted RBP19.76■□□□□ 0.75
NPHP3-201ENST00000337331 RNF214Q8ND24 703 aa19.75■□□□□ 0.75
NPHP3-201ENST00000337331 MRC2Q9UBG0 1479 aa19.75■□□□□ 0.75
NPHP3-201ENST00000337331 CGNQ9P2M7 1197 aaKnown RBP19.74■□□□□ 0.75
NPHP3-201ENST00000337331 NGDNQ8NEJ9 315 aaKnown RBP19.74■□□□□ 0.75
NPHP3-201ENST00000337331 VGFO15240 615 aaPredicted RBP19.73■□□□□ 0.75
NPHP3-201ENST00000337331 NCOA2Q15596 1464 aa19.72■□□□□ 0.75
NPHP3-201ENST00000337331 LAMC3Q9Y6N6 1575 aa19.72■□□□□ 0.75
NPHP3-201ENST00000337331 NPHP1O15259 732 aa19.72■□□□□ 0.75
NPHP3-201ENST00000337331 SYAP1Q96A49 352 aaPredicted RBP19.72■□□□□ 0.75
NPHP3-201ENST00000337331 EVC2Q86UK5 1308 aa19.72■□□□□ 0.75
NPHP3-201ENST00000337331 AMPHP49418 695 aa19.72■□□□□ 0.75
NPHP3-201ENST00000337331 CAVIN1Q6NZI2 390 aaKnown RBP19.72■□□□□ 0.75
NPHP3-201ENST00000337331 LTV1Q96GA3 475 aaPredicted RBP19.72■□□□□ 0.75
NPHP3-201ENST00000337331 TBC1D2Q9BYX2 928 aa19.72■□□□□ 0.75
NPHP3-201ENST00000337331 MINK1Q8N4C8 1332 aaPredicted RBP19.71■□□□□ 0.75
NPHP3-201ENST00000337331 CASKIN1Q8WXD9 1431 aa19.71■□□□□ 0.75
NPHP3-201ENST00000337331 ANKRD50Q9ULJ7 1429 aa19.71■□□□□ 0.75
NPHP3-201ENST00000337331 TRHP20396 242 aaPredicted RBP19.71■□□□□ 0.75
NPHP3-201ENST00000337331 MCTP1Q6DN14 999 aa19.7■□□□□ 0.74
NPHP3-201ENST00000337331 CHMP4AQ9BY43 222 aa19.7■□□□□ 0.74
NPHP3-201ENST00000337331 ST18O60284 1047 aa19.7■□□□□ 0.74
NPHP3-201ENST00000337331 ZNF330Q9Y3S2 320 aaPredicted RBP19.7■□□□□ 0.74
NPHP3-201ENST00000337331 NGEFQ8N5V2 710 aa19.69■□□□□ 0.74
NPHP3-201ENST00000337331 ADAMTS8Q9UP79 889 aa19.69■□□□□ 0.74
NPHP3-201ENST00000337331 TULP1O00294 542 aaPredicted RBP19.69■□□□□ 0.74
NPHP3-201ENST00000337331 NBPF8Q3BBV2 869 aa19.69■□□□□ 0.74
NPHP3-201ENST00000337331 C8orf34Q49A92 452 aa19.69■□□□□ 0.74
NPHP3-201ENST00000337331 PANK1Q8TE04 598 aa19.68■□□□□ 0.74
NPHP3-201ENST00000337331 CSB-PGBD3P0DP91 1061 aa19.68■□□□□ 0.74
NPHP3-201ENST00000337331 DZIP1LQ8IYY4 767 aaKnown RBP19.67■□□□□ 0.74
NPHP3-201ENST00000337331 FOXD4L6Q3SYB3 417 aaPredicted RBP19.67■□□□□ 0.74
NPHP3-201ENST00000337331 FOXD4L3Q6VB84 417 aaPredicted RBP19.67■□□□□ 0.74
NPHP3-201ENST00000337331 DNMBPQ6XZF7 1577 aa19.67■□□□□ 0.74
NPHP3-201ENST00000337331 VGLL3A8MV65 326 aa19.66■□□□□ 0.74
NPHP3-201ENST00000337331 CCDC39Q9UFE4 941 aa19.66■□□□□ 0.74
NPHP3-201ENST00000337331 DDX19BQ9UMR2 479 aa19.66■□□□□ 0.74
NPHP3-201ENST00000337331 BRD4O60885 1362 aaPredicted RBP19.65■□□□□ 0.74
NPHP3-201ENST00000337331 GNL2Q13823 731 aaKnown RBP19.65■□□□□ 0.74
NPHP3-201ENST00000337331 RIPK4P57078 832 aa19.64■□□□□ 0.73
NPHP3-201ENST00000337331 IGSF3O75054 1194 aa19.64■□□□□ 0.73
NPHP3-201ENST00000337331 AEBP1Q8IUX7 1158 aa19.64■□□□□ 0.73
NPHP3-201ENST00000337331 SMAP1Q8IYB5 467 aaPredicted RBP19.64■□□□□ 0.73
NPHP3-201ENST00000337331 PRXQ9BXM0 1461 aa19.63■□□□□ 0.73
NPHP3-201ENST00000337331 ERICH3Q5RHP9 1530 aa19.63■□□□□ 0.73
NPHP3-201ENST00000337331 COG3Q96JB2 828 aa19.63■□□□□ 0.73
NPHP3-201ENST00000337331 HDAC5Q9UQL6 1122 aa19.63■□□□□ 0.73
NPHP3-201ENST00000337331 MAPKBP1O60336 1514 aa19.63■□□□□ 0.73
NPHP3-201ENST00000337331 DIAPH1O60610 1272 aaKnown RBP19.63■□□□□ 0.73
NPHP3-201ENST00000337331 RUNDC1Q96C34 613 aa19.63■□□□□ 0.73
NPHP3-201ENST00000337331 FYCO1Q9BQS8 1478 aa19.63■□□□□ 0.73
NPHP3-201ENST00000337331 RILPL2Q969X0 211 aa19.62■□□□□ 0.73
NPHP3-201ENST00000337331 CHMP3Q9Y3E7 222 aa19.62■□□□□ 0.73
NPHP3-201ENST00000337331 SPDYE4A6NLX3 237 aa19.62■□□□□ 0.73
NPHP3-201ENST00000337331 NBPF1Q3BBV0 1214 aa19.62■□□□□ 0.73
NPHP3-201ENST00000337331 GPATCH3Q96I76 525 aa19.62■□□□□ 0.73
NPHP3-201ENST00000337331 OFD1O75665 1012 aa19.62■□□□□ 0.73
NPHP3-201ENST00000337331 HMGN5P82970 282 aaKnown RBP19.61■□□□□ 0.73
NPHP3-201ENST00000337331 EID1Q9Y6B2 187 aa19.61■□□□□ 0.73
NPHP3-201ENST00000337331 MIA2Q96PC5 1412 aa19.61■□□□□ 0.73
NPHP3-201ENST00000337331 HTATSF1O43719 755 aaKnown RBP19.61■□□□□ 0.73
NPHP3-201ENST00000337331 BCAR3O75815 825 aa19.6■□□□□ 0.73
NPHP3-201ENST00000337331 SASS6Q6UVJ0 657 aa19.6■□□□□ 0.73
NPHP3-201ENST00000337331 DYNC1I1O14576 645 aa19.6■□□□□ 0.73
NPHP3-201ENST00000337331 CCDC66A2RUB6 948 aa19.6■□□□□ 0.73
NPHP3-201ENST00000337331 PDZRN3Q9UPQ7 1066 aa19.6■□□□□ 0.73
NPHP3-201ENST00000337331 GORABQ5T7V8 394 aa19.59■□□□□ 0.73
NPHP3-201ENST00000337331 LNPKQ9C0E8 428 aa19.59■□□□□ 0.73
NPHP3-201ENST00000337331 URB2Q14146 1524 aaKnown RBP19.59■□□□□ 0.73
NPHP3-201ENST00000337331 APPP05067 770 aa19.58■□□□□ 0.73
NPHP3-201ENST00000337331 PPP4R3BQ5MIZ7 849 aa19.58■□□□□ 0.72
Retrieved 100 of 20,778 RNA–protein pairs in 56 ms