RNA–Protein interactions for RNA: ENST00000318787.13

HDDC2-201, Transcript of HD domain containing 2, humanhuman

TSL 1 (best)

Gene HDDC2, Length 1,350 nt, Biotype nonsense mediated decay, Subcellular localisation Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
HDDC2-201ENST00000318787 PPP1R15AO75807 674 aaPredicted RBP24.11■■□□□ 1.45
HDDC2-201ENST00000318787 UBAP1LF5GYI3 381 aa24.09■■□□□ 1.45
HDDC2-201ENST00000318787 RIMS2Q9UQ26 1411 aa24.08■■□□□ 1.44
HDDC2-201ENST00000318787 NUTM2DQ5VT03 806 aaPredicted RBP24.07■■□□□ 1.44
HDDC2-201ENST00000318787 SLC26A8Q96RN1 970 aa24.06■■□□□ 1.44
HDDC2-201ENST00000318787 SCAF1Q9H7N4 1312 aaKnown RBP24.06■■□□□ 1.44
HDDC2-201ENST00000318787 SLC4A1APQ9BWU0 796 aaKnown RBP24.05■■□□□ 1.44
HDDC2-201ENST00000318787 KIF1BO60333 1816 aa24.05■■□□□ 1.44
HDDC2-201ENST00000318787 CLTCL1P53675 1640 aa24.05■■□□□ 1.44
HDDC2-201ENST00000318787 ZFYVE9O95405 1425 aa24.04■■□□□ 1.44
HDDC2-201ENST00000318787 HDGFP51858 240 aaKnown RBP24.03■■□□□ 1.44
HDDC2-201ENST00000318787 TRPM2O94759 1503 aa24.02■■□□□ 1.44
HDDC2-201ENST00000318787 ZNF326Q5BKZ1 582 aaKnown RBP24.02■■□□□ 1.44
HDDC2-201ENST00000318787 PIAS4Q8N2W9 510 aaPredicted RBP24.01■■□□□ 1.43
HDDC2-201ENST00000318787 LRRC7Q96NW7 1537 aa23.99■■□□□ 1.43
HDDC2-201ENST00000318787 PIP4K2BP78356 416 aa23.99■■□□□ 1.43
HDDC2-201ENST00000318787 ABCF1Q8NE71 845 aaKnown RBP eCLIP23.99■■□□□ 1.43
HDDC2-201ENST00000318787 XIRP1Q702N8 1843 aaKnown RBP23.98■■□□□ 1.43
HDDC2-201ENST00000318787 PLEKHG1Q9ULL1 1385 aa23.97■■□□□ 1.43
HDDC2-201ENST00000318787 TOM1O60784 492 aa23.95■■□□□ 1.42
HDDC2-201ENST00000318787 SETD5Q9C0A6 1442 aa23.94■■□□□ 1.42
HDDC2-201ENST00000318787 CHD2O14647 1828 aaKnown RBP23.92■■□□□ 1.42
HDDC2-201ENST00000318787 KCNA6P17658 529 aa23.91■■□□□ 1.42
HDDC2-201ENST00000318787 RBM33Q96EV2 1170 aaKnown RBP23.91■■□□□ 1.42
HDDC2-201ENST00000318787 MSH5O43196 834 aa23.9■■□□□ 1.42
HDDC2-201ENST00000318787 PROSER2Q86WR7 435 aaPredicted RBP23.9■■□□□ 1.42
HDDC2-201ENST00000318787 NWD1Q149M9 1564 aa23.89■■□□□ 1.42
HDDC2-201ENST00000318787 MPHOSPH9Q99550 1183 aa23.89■■□□□ 1.41
HDDC2-201ENST00000318787 DIP2AQ14689 1571 aa23.88■■□□□ 1.41
HDDC2-201ENST00000318787 NEXMIFQ5QGS0 1516 aa23.87■■□□□ 1.41
HDDC2-201ENST00000318787 RAB3GAP2Q9H2M9 1393 aa23.87■■□□□ 1.41
HDDC2-201ENST00000318787 TMEM94Q12767 1356 aa23.86■■□□□ 1.41
HDDC2-201ENST00000318787 NKTRP30414 1462 aaKnown RBP23.85■■□□□ 1.41
HDDC2-201ENST00000318787 ADAMTS13Q76LX8 1427 aa23.85■■□□□ 1.41
HDDC2-201ENST00000318787 ALKQ9UM73 1620 aa23.85■■□□□ 1.41
HDDC2-201ENST00000318787 DISP3Q9P2K9 1392 aa23.84■■□□□ 1.41
HDDC2-201ENST00000318787 NRXN3Q9Y4C0 1643 aa23.84■■□□□ 1.41
HDDC2-201ENST00000318787 TBX22Q9Y458 520 aa23.84■■□□□ 1.41
HDDC2-201ENST00000318787 CCDC144AA2RUR9 1427 aa23.84■■□□□ 1.41
HDDC2-201ENST00000318787 HSPA1LP34931 641 aa23.81■■□□□ 1.4
HDDC2-201ENST00000318787 PPLO60437 1756 aa23.81■■□□□ 1.4
HDDC2-201ENST00000318787 SETBP1Q9Y6X0 1596 aa23.8■■□□□ 1.4
HDDC2-201ENST00000318787 C14orf37Q86TY3 774 aa23.79■■□□□ 1.4
HDDC2-201ENST00000318787 ACIN1Q9UKV3 1341 aaKnown RBP23.78■■□□□ 1.4
HDDC2-201ENST00000318787 RGL3Q3MIN7 710 aa23.78■■□□□ 1.4
HDDC2-201ENST00000318787 MSH6P52701 1360 aa23.76■■□□□ 1.39
HDDC2-201ENST00000318787 AMOTL2Q9Y2J4 779 aa23.75■■□□□ 1.39
HDDC2-201ENST00000318787 PIK3R4Q99570 1358 aa23.74■■□□□ 1.39
HDDC2-201ENST00000318787 VGFO15240 615 aaPredicted RBP23.74■■□□□ 1.39
HDDC2-201ENST00000318787 PTPRUQ92729 1446 aa23.73■■□□□ 1.39
HDDC2-201ENST00000318787 METP08581 1390 aa23.71■■□□□ 1.39
HDDC2-201ENST00000318787 XRN1Q8IZH2 1706 aaKnown RBP23.71■■□□□ 1.39
HDDC2-201ENST00000318787 IFT172Q9UG01 1749 aa23.71■■□□□ 1.39
HDDC2-201ENST00000318787 ILDR2Q71H61 639 aa23.71■■□□□ 1.39
HDDC2-201ENST00000318787 RPGRIP1LQ68CZ1 1315 aa23.71■■□□□ 1.39
HDDC2-201ENST00000318787 ROBO1Q9Y6N7 1651 aa23.7■■□□□ 1.38
HDDC2-201ENST00000318787 SETD1AO15047 1707 aaKnown RBP23.69■■□□□ 1.38
HDDC2-201ENST00000318787 SIPA1L2Q9P2F8 1722 aaPredicted RBP23.69■■□□□ 1.38
HDDC2-201ENST00000318787 SPATA31E1Q6ZUB1 1445 aa23.65■■□□□ 1.38
HDDC2-201ENST00000318787 ADGRF5Q8IZF2 1346 aa23.63■■□□□ 1.37
HDDC2-201ENST00000318787 ATF3P18847 181 aa23.62■■□□□ 1.37
HDDC2-201ENST00000318787 NCOA3Q9Y6Q9 1424 aa23.61■■□□□ 1.37
HDDC2-201ENST00000318787 NALCNQ8IZF0 1738 aa23.6■■□□□ 1.37
HDDC2-201ENST00000318787 SLAIN2Q9P270 581 aa23.6■■□□□ 1.37
HDDC2-201ENST00000318787 FAM135BQ49AJ0 1406 aa23.6■■□□□ 1.37
HDDC2-201ENST00000318787 ANKRD30BQ9BXX2 1392 aa23.59■■□□□ 1.37
HDDC2-201ENST00000318787 PHLPP1O60346 1717 aa23.59■■□□□ 1.37
HDDC2-201ENST00000318787 C19orf44Q9H6X5 657 aa23.59■■□□□ 1.37
HDDC2-201ENST00000318787 CADPS2Q86UW7 1296 aa23.57■■□□□ 1.36
HDDC2-201ENST00000318787 MED1Q15648 1581 aaPredicted RBP23.57■■□□□ 1.36
HDDC2-201ENST00000318787 HRCP23327 699 aa23.56■■□□□ 1.36
HDDC2-201ENST00000318787 STK26Q9P289 416 aa23.53■■□□□ 1.36
HDDC2-201ENST00000318787 PIK3C2GO75747 1445 aa23.52■■□□□ 1.36
HDDC2-201ENST00000318787 ROBO2Q9HCK4 1378 aa23.52■■□□□ 1.36
HDDC2-201ENST00000318787 PTCH1Q13635 1447 aa23.51■■□□□ 1.35
HDDC2-201ENST00000318787 ADGRL3Q9HAR2 1447 aa23.51■■□□□ 1.35
HDDC2-201ENST00000318787 TMEM132EQ6IEE7 984 aa23.51■■□□□ 1.35
HDDC2-201ENST00000318787 KDM2AQ9Y2K7 1162 aa23.5■■□□□ 1.35
HDDC2-201ENST00000318787 DCCP43146 1447 aa23.5■■□□□ 1.35
HDDC2-201ENST00000318787 LAMC1P11047 1609 aa23.49■■□□□ 1.35
HDDC2-201ENST00000318787 MYOM2P54296 1465 aa23.49■■□□□ 1.35
HDDC2-201ENST00000318787 ASXL1Q8IXJ9 1541 aa23.48■■□□□ 1.35
HDDC2-201ENST00000318787 SOCS7O14512 581 aa23.48■■□□□ 1.35
HDDC2-201ENST00000318787 KNDC1Q76NI1 1749 aa23.47■■□□□ 1.35
HDDC2-201ENST00000318787 DCAF11Q8TEB1 546 aa23.46■■□□□ 1.35
HDDC2-201ENST00000318787 MST1RQ04912 1400 aa23.45■■□□□ 1.34
HDDC2-201ENST00000318787 CFAP70Q5T0N1 1121 aa23.44■■□□□ 1.34
HDDC2-201ENST00000318787 COL16A1Q07092 1604 aaPredicted RBP23.43■■□□□ 1.34
HDDC2-201ENST00000318787 BRINP3Q76B58 766 aa23.42■■□□□ 1.34
HDDC2-201ENST00000318787 LRPPRCP42704 1394 aaKnown RBP23.42■■□□□ 1.34
HDDC2-201ENST00000318787 YTHDC2Q9H6S0 1430 aaKnown RBP23.42■■□□□ 1.34
HDDC2-201ENST00000318787 NRXN1Q9ULB1 1477 aa23.42■■□□□ 1.34
HDDC2-201ENST00000318787 WAPLQ7Z5K2 1190 aa23.41■■□□□ 1.34
HDDC2-201ENST00000318787 AHDC1Q5TGY3 1603 aaPredicted RBP23.41■■□□□ 1.34
HDDC2-201ENST00000318787 PRAG1Q86YV5 1406 aa23.4■■□□□ 1.34
HDDC2-201ENST00000318787 C14orf93Q9H972 538 aaKnown RBP23.4■■□□□ 1.34
HDDC2-201ENST00000318787 DHX57Q6P158 1386 aaKnown RBP23.39■■□□□ 1.33
HDDC2-201ENST00000318787 NHSL1Q5SYE7 1610 aa23.38■■□□□ 1.33
HDDC2-201ENST00000318787 PLEKHH1Q9ULM0 1364 aa23.37■■□□□ 1.33
HDDC2-201ENST00000318787 TECPR2O15040 1411 aa23.36■■□□□ 1.33
Retrieved 100 of 20,778 RNA–protein pairs in 58.7 ms