RNA–Protein interactions for RNA: ENST00000315249.11

RFFL-201, Transcript of ring finger and FYVE like domain containing E3 ubiquitin protein ligase, humanhuman

APPRIS P1 TSL 2 BASIC

Gene RFFL, Length 7,293 nt, Biotype protein coding, Subcellular localisation Cytoplasm, Cytosol, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
RFFL-201ENST00000315249 NCOA2Q15596 1464 aa16.83■□□□□ 0.28
RFFL-201ENST00000315249 PHLDB1Q86UU1 1377 aa16.83■□□□□ 0.28
RFFL-201ENST00000315249 POGZQ7Z3K3 1410 aa16.83■□□□□ 0.28
RFFL-201ENST00000315249 PRAM1Q96QH2 718 aa16.82■□□□□ 0.28
RFFL-201ENST00000315249 AIMP1Q12904 312 aaKnown RBP16.82■□□□□ 0.28
RFFL-201ENST00000315249 RILPL2Q969X0 211 aa16.82■□□□□ 0.28
RFFL-201ENST00000315249 MIA2Q96PC5 1412 aa16.82■□□□□ 0.28
RFFL-201ENST00000315249 DDX58O95786 925 aaKnown RBP16.81■□□□□ 0.28
RFFL-201ENST00000315249 MFAP1P55081 439 aaKnown RBP16.81■□□□□ 0.28
RFFL-201ENST00000315249 CFAP70Q5T0N1 1121 aa16.81■□□□□ 0.28
RFFL-201ENST00000315249 FAM177BA6PVY3 158 aa16.81■□□□□ 0.28
RFFL-201ENST00000315249 TSPYL4Q9UJ04 414 aa16.81■□□□□ 0.28
RFFL-201ENST00000315249 LRRC9Q6ZRR7 1453 aa16.8■□□□□ 0.28
RFFL-201ENST00000315249 RASSF8Q8NHQ8 419 aa16.8■□□□□ 0.28
RFFL-201ENST00000315249 RBM33Q96EV2 1170 aaKnown RBP16.8■□□□□ 0.28
RFFL-201ENST00000315249 MARCH6O60337 910 aa16.8■□□□□ 0.28
RFFL-201ENST00000315249 FYCO1Q9BQS8 1478 aa16.8■□□□□ 0.28
RFFL-201ENST00000315249 CASKIN1Q8WXD9 1431 aa16.8■□□□□ 0.28
RFFL-201ENST00000315249 APAF1O14727 1248 aa16.79■□□□□ 0.28
RFFL-201ENST00000315249 HMGXB3Q12766 1538 aa16.79■□□□□ 0.28
RFFL-201ENST00000315249 DNMBPQ6XZF7 1577 aa16.78■□□□□ 0.28
RFFL-201ENST00000315249 DRC7Q8IY82 874 aa16.78■□□□□ 0.28
RFFL-201ENST00000315249 RBM42Q9BTD8 480 aaKnown RBP16.78■□□□□ 0.28
RFFL-201ENST00000315249 XPCQ01831 940 aaPredicted RBP16.78■□□□□ 0.28
RFFL-201ENST00000315249 CTDP1Q9Y5B0 961 aaPredicted RBP16.78■□□□□ 0.28
RFFL-201ENST00000315249 FKBP5Q13451 457 aaPredicted RBP16.77■□□□□ 0.28
RFFL-201ENST00000315249 TOM1L2Q6ZVM7 507 aa16.77■□□□□ 0.28
RFFL-201ENST00000315249 NRDCO43847 1150 aa16.77■□□□□ 0.28
RFFL-201ENST00000315249 RIC3Q7Z5B4 369 aa16.77■□□□□ 0.28
RFFL-201ENST00000315249 DDX54Q8TDD1 881 aaKnown RBP16.77■□□□□ 0.27
RFFL-201ENST00000315249 RRBP1Q9P2E9 1410 aaKnown RBP16.76■□□□□ 0.27
RFFL-201ENST00000315249 AMOTL1Q8IY63 956 aa16.76■□□□□ 0.27
RFFL-201ENST00000315249 ANKRD45Q5TZF3 282 aa16.76■□□□□ 0.27
RFFL-201ENST00000315249 KIF21BO75037 1637 aa16.76■□□□□ 0.27
RFFL-201ENST00000315249 SAMD1Q6SPF0 538 aaPredicted RBP16.75■□□□□ 0.27
RFFL-201ENST00000315249 APPP05067 770 aa16.75■□□□□ 0.27
RFFL-201ENST00000315249 LAMC3Q9Y6N6 1575 aa16.74■□□□□ 0.27
RFFL-201ENST00000315249 CWC22Q9HCG8 908 aaKnown RBP16.74■□□□□ 0.27
RFFL-201ENST00000315249 C9orf84Q5VXU9 1444 aa16.74■□□□□ 0.27
RFFL-201ENST00000315249 PLIN1O60240 522 aa16.74■□□□□ 0.27
RFFL-201ENST00000315249 CDK19Q9BWU1 502 aa16.72■□□□□ 0.27
RFFL-201ENST00000315249 E9PSI1 815 aa16.72■□□□□ 0.27
RFFL-201ENST00000315249 HECW1Q76N89 1606 aa16.72■□□□□ 0.27
RFFL-201ENST00000315249 CREBRFQ8IUR6 639 aa16.72■□□□□ 0.27
RFFL-201ENST00000315249 ZKSCAN2Q63HK3 967 aa16.71■□□□□ 0.27
RFFL-201ENST00000315249 CD109Q6YHK3 1445 aa16.71■□□□□ 0.27
RFFL-201ENST00000315249 PDE3BQ13370 1112 aa16.71■□□□□ 0.27
RFFL-201ENST00000315249 FOXD4L1Q9NU39 408 aa16.71■□□□□ 0.26
RFFL-201ENST00000315249 TOP2BQ02880 1626 aa16.7■□□□□ 0.26
RFFL-201ENST00000315249 STAC3Q96MF2 364 aa16.7■□□□□ 0.26
RFFL-201ENST00000315249 NOP58Q9Y2X3 529 aaKnown RBP16.7■□□□□ 0.26
RFFL-201ENST00000315249 PLEKHH2Q8IVE3 1493 aa16.7■□□□□ 0.26
RFFL-201ENST00000315249 SLC52A1Q9NWF4 448 aa16.7■□□□□ 0.26
RFFL-201ENST00000315249 PRDM11Q9NQV5 511 aa16.7■□□□□ 0.26
RFFL-201ENST00000315249 TATP17735 454 aaPredicted RBP16.69■□□□□ 0.26
RFFL-201ENST00000315249 AKAP17AQ02040 695 aaKnown RBP16.69■□□□□ 0.26
RFFL-201ENST00000315249 SMG6Q86US8 1419 aaKnown RBP16.69■□□□□ 0.26
RFFL-201ENST00000315249 HTATSF1O43719 755 aaKnown RBP16.69■□□□□ 0.26
RFFL-201ENST00000315249 IFIT2P09913 472 aaKnown RBP16.68■□□□□ 0.26
RFFL-201ENST00000315249 LRRFIP1Q32MZ4 808 aaKnown RBP16.68■□□□□ 0.26
RFFL-201ENST00000315249 TCEAL9Q9UHQ7 104 aa16.68■□□□□ 0.26
RFFL-201ENST00000315249 G3BP1Q13283 466 aaKnown RBP eCLIP16.68■□□□□ 0.26
RFFL-201ENST00000315249 SLKQ9H2G2 1235 aaPredicted RBP16.68■□□□□ 0.26
RFFL-201ENST00000315249 RUNDC1Q96C34 613 aa16.68■□□□□ 0.26
RFFL-201ENST00000315249 DHX16O60231 1041 aaKnown RBP16.67■□□□□ 0.26
RFFL-201ENST00000315249 MTHFSP49914 203 aa16.67■□□□□ 0.26
RFFL-201ENST00000315249 PLEKHO1Q53GL0 409 aaPredicted RBP16.67■□□□□ 0.26
RFFL-201ENST00000315249 KIF6Q6ZMV9 814 aa16.67■□□□□ 0.26
RFFL-201ENST00000315249 FYB1O15117 783 aa16.67■□□□□ 0.26
RFFL-201ENST00000315249 ZNF428Q96B54 188 aa16.67■□□□□ 0.26
RFFL-201ENST00000315249 KIF16BQ96L93 1317 aa16.67■□□□□ 0.26
RFFL-201ENST00000315249 CABP1Q9NZU7 370 aa16.66■□□□□ 0.26
RFFL-201ENST00000315249 COG6Q9Y2V7 657 aa16.66■□□□□ 0.26
RFFL-201ENST00000315249 CCDC27Q2M243 656 aa16.66■□□□□ 0.26
RFFL-201ENST00000315249 TROQ12816 1431 aaPredicted RBP16.66■□□□□ 0.26
RFFL-201ENST00000315249 CEBPAP49715 358 aaPredicted RBP16.66■□□□□ 0.26
RFFL-201ENST00000315249 PRKRIP1Q9H875 184 aaPredicted RBP16.66■□□□□ 0.26
RFFL-201ENST00000315249 SUPT6HQ7KZ85 1726 aaKnown RBP16.66■□□□□ 0.26
RFFL-201ENST00000315249 NEUROD6Q96NK8 337 aa16.65■□□□□ 0.26
RFFL-201ENST00000315249 DIAPH3Q9NSV4 1193 aa16.65■□□□□ 0.26
RFFL-201ENST00000315249 KIAA2012Q0VF49 1180 aa16.65■□□□□ 0.26
RFFL-201ENST00000315249 FOXD4L5Q5VV16 416 aaPredicted RBP16.65■□□□□ 0.26
RFFL-201ENST00000315249 FOXD4L4Q8WXT5 416 aaPredicted RBP16.65■□□□□ 0.26
RFFL-201ENST00000315249 SYNE3Q6ZMZ3 975 aa16.65■□□□□ 0.26
RFFL-201ENST00000315249 ZC3H6P61129 1189 aaKnown RBP16.65■□□□□ 0.26
RFFL-201ENST00000315249 ADAMTS2O95450 1211 aa16.65■□□□□ 0.26
RFFL-201ENST00000315249 ERICH6BQ5W0A0 696 aa16.65■□□□□ 0.26
RFFL-201ENST00000315249 ERICH3Q5RHP9 1530 aa16.65■□□□□ 0.26
RFFL-201ENST00000315249 CABP4P57796 275 aa16.64■□□□□ 0.26
RFFL-201ENST00000315249 EFCAB5A4FU69 1503 aa16.64■□□□□ 0.25
RFFL-201ENST00000315249 CDK13Q14004 1512 aaKnown RBP16.64■□□□□ 0.25
RFFL-201ENST00000315249 ANO8Q9HCE9 1232 aaPredicted RBP16.64■□□□□ 0.25
RFFL-201ENST00000315249 CCDC34Q96HJ3 373 aa16.64■□□□□ 0.25
RFFL-201ENST00000315249 IQGAP2Q13576 1575 aa16.64■□□□□ 0.25
RFFL-201ENST00000315249 EHBP1L1Q8N3D4 1523 aa16.64■□□□□ 0.25
RFFL-201ENST00000315249 ARAP1Q96P48 1450 aa16.64■□□□□ 0.25
RFFL-201ENST00000315249 GNAI1P63096 354 aa16.63■□□□□ 0.25
RFFL-201ENST00000315249 SF3A1Q15459 793 aaKnown RBP16.63■□□□□ 0.25
RFFL-201ENST00000315249 PDE4CQ08493 712 aa16.63■□□□□ 0.25
RFFL-201ENST00000315249 NBPF1Q3BBV0 1214 aa16.63■□□□□ 0.25
Retrieved 100 of 20,778 RNA–protein pairs in 26.8 ms