RNA–Protein interactions for RNA: ENST00000308271.13

USP48-201, Transcript of ubiquitin specific peptidase 48, humanhuman

APPRIS P1 TSL 1 (best) BASIC

Gene USP48, Length 4,595 nt, Biotype protein coding, Subcellular localisation Endoplasmic reticulum, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
USP48-201ENST00000308271 REC8O95072 547 aa23.83■■□□□ 1.41
USP48-201ENST00000308271 FAM13BQ9NYF5 915 aa23.83■■□□□ 1.4
USP48-201ENST00000308271 FOXD4L5Q5VV16 416 aaPredicted RBP23.82■■□□□ 1.4
USP48-201ENST00000308271 FOXD4L4Q8WXT5 416 aaPredicted RBP23.82■■□□□ 1.4
USP48-201ENST00000308271 SUPT6HQ7KZ85 1726 aaKnown RBP23.82■■□□□ 1.4
USP48-201ENST00000308271 NOL8Q76FK4 1167 aaKnown RBP23.81■■□□□ 1.4
USP48-201ENST00000308271 NASPP49321 788 aaPredicted RBP23.81■■□□□ 1.4
USP48-201ENST00000308271 NAP1L2Q9ULW6 460 aaPredicted RBP23.81■■□□□ 1.4
USP48-201ENST00000308271 TPM2P07951 284 aa23.81■■□□□ 1.4
USP48-201ENST00000308271 ANKRD30BQ9BXX2 1392 aa23.81■■□□□ 1.4
USP48-201ENST00000308271 LNPKQ9C0E8 428 aa23.81■■□□□ 1.4
USP48-201ENST00000308271 PCF11O94913 1555 aaKnown RBP23.8■■□□□ 1.4
USP48-201ENST00000308271 ROCK1Q13464 1354 aa23.8■■□□□ 1.4
USP48-201ENST00000308271 EVC2Q86UK5 1308 aa23.8■■□□□ 1.4
USP48-201ENST00000308271 MAP7D2Q96T17 732 aa23.79■■□□□ 1.4
USP48-201ENST00000308271 BCAR3O75815 825 aa23.79■■□□□ 1.4
USP48-201ENST00000308271 NBPF1Q3BBV0 1214 aa23.79■■□□□ 1.4
USP48-201ENST00000308271 ATP6V1DQ9Y5K8 247 aa23.78■■□□□ 1.4
USP48-201ENST00000308271 DAPK1P53355 1430 aa23.78■■□□□ 1.4
USP48-201ENST00000308271 ELL2O00472 640 aaPredicted RBP23.76■■□□□ 1.39
USP48-201ENST00000308271 SLC4A10Q6U841 1118 aa23.76■■□□□ 1.39
USP48-201ENST00000308271 CHMP4AQ9BY43 222 aa23.76■■□□□ 1.39
USP48-201ENST00000308271 SOX12O15370 315 aa23.76■■□□□ 1.39
USP48-201ENST00000308271 HDGFP51858 240 aaKnown RBP23.76■■□□□ 1.39
USP48-201ENST00000308271 API5Q9BZZ5 524 aaKnown RBP23.76■■□□□ 1.39
USP48-201ENST00000308271 TCP11L2Q8N4U5 519 aa23.76■■□□□ 1.39
USP48-201ENST00000308271 MCM4P33991 863 aa23.74■■□□□ 1.39
USP48-201ENST00000308271 MTERF4Q7Z6M4 381 aaKnown RBP23.74■■□□□ 1.39
USP48-201ENST00000308271 RIPK4P57078 832 aa23.74■■□□□ 1.39
USP48-201ENST00000308271 MCTP1Q6DN14 999 aa23.73■■□□□ 1.39
USP48-201ENST00000308271 INTS3Q68E01 1043 aaKnown RBP23.72■■□□□ 1.39
USP48-201ENST00000308271 CCDC173Q0VFZ6 552 aa23.72■■□□□ 1.39
USP48-201ENST00000308271 PTPRGP23470 1445 aa23.72■■□□□ 1.39
USP48-201ENST00000308271 DIAPH1O60610 1272 aaKnown RBP23.71■■□□□ 1.39
USP48-201ENST00000308271 PLEKHG5O94827 1062 aa23.71■■□□□ 1.39
USP48-201ENST00000308271 GRPEL1Q9HAV7 217 aa23.71■■□□□ 1.39
USP48-201ENST00000308271 CDC45O75419 566 aa23.7■■□□□ 1.38
USP48-201ENST00000308271 PLEKHH2Q8IVE3 1493 aa23.7■■□□□ 1.38
USP48-201ENST00000308271 SLFN5Q08AF3 891 aa23.69■■□□□ 1.38
USP48-201ENST00000308271 GPATCH3Q96I76 525 aa23.69■■□□□ 1.38
USP48-201ENST00000308271 HDAC5Q9UQL6 1122 aa23.69■■□□□ 1.38
USP48-201ENST00000308271 HMGXB3Q12766 1538 aa23.69■■□□□ 1.38
USP48-201ENST00000308271 R3HCC1Q9Y3T6 440 aaKnown RBP23.69■■□□□ 1.38
USP48-201ENST00000308271 HECW1Q76N89 1606 aa23.69■■□□□ 1.38
USP48-201ENST00000308271 PTPN23Q9H3S7 1636 aa23.68■■□□□ 1.38
USP48-201ENST00000308271 ESPNB1AK53 854 aa23.67■■□□□ 1.38
USP48-201ENST00000308271 VGFO15240 615 aaPredicted RBP23.67■■□□□ 1.38
USP48-201ENST00000308271 PRDM2Q13029 1718 aa23.67■■□□□ 1.38
USP48-201ENST00000308271 ERBINQ96RT1 1412 aa23.67■■□□□ 1.38
USP48-201ENST00000308271 RPRD2Q5VT52 1461 aaKnown RBP23.67■■□□□ 1.38
USP48-201ENST00000308271 RRP9O43818 475 aaKnown RBP23.67■■□□□ 1.38
USP48-201ENST00000308271 SCAPERQ9BY12 1400 aa23.67■■□□□ 1.38
USP48-201ENST00000308271 RILPL2Q969X0 211 aa23.67■■□□□ 1.38
USP48-201ENST00000308271 SUGP2Q8IX01 1082 aaKnown RBP eCLIP23.66■■□□□ 1.38
USP48-201ENST00000308271 CCDC39Q9UFE4 941 aa23.66■■□□□ 1.38
USP48-201ENST00000308271 CIZ1Q9ULV3 898 aaPredicted RBP23.66■■□□□ 1.38
USP48-201ENST00000308271 PKNOX2Q96KN3 472 aa23.66■■□□□ 1.38
USP48-201ENST00000308271 TPM4P67936 248 aa23.65■■□□□ 1.38
USP48-201ENST00000308271 MTHFSP49914 203 aa23.65■■□□□ 1.38
USP48-201ENST00000308271 FOXD4L6Q3SYB3 417 aaPredicted RBP23.65■■□□□ 1.38
USP48-201ENST00000308271 C20orf194Q5TEA3 1177 aa23.65■■□□□ 1.38
USP48-201ENST00000308271 FOXD4L3Q6VB84 417 aaPredicted RBP23.65■■□□□ 1.38
USP48-201ENST00000308271 C9orf84Q5VXU9 1444 aa23.64■■□□□ 1.38
USP48-201ENST00000308271 NUTM2DQ5VT03 806 aaPredicted RBP23.64■■□□□ 1.37
USP48-201ENST00000308271 WDR63Q8IWG1 891 aa23.63■■□□□ 1.37
USP48-201ENST00000308271 TAOK2Q9UL54 1235 aa23.63■■□□□ 1.37
USP48-201ENST00000308271 SKAP1Q86WV1 359 aa23.63■■□□□ 1.37
USP48-201ENST00000308271 CT47B1P0C2W7 299 aaPredicted RBP23.63■■□□□ 1.37
USP48-201ENST00000308271 TROQ12816 1431 aaPredicted RBP23.63■■□□□ 1.37
USP48-201ENST00000308271 GNAI1P63096 354 aa23.62■■□□□ 1.37
USP48-201ENST00000308271 MBD3O95983 291 aa23.61■■□□□ 1.37
USP48-201ENST00000308271 CAVIN1Q6NZI2 390 aaKnown RBP23.61■■□□□ 1.37
USP48-201ENST00000308271 RABEP1Q15276 862 aa23.61■■□□□ 1.37
USP48-201ENST00000308271 MVPQ14764 893 aaKnown RBP23.6■■□□□ 1.37
USP48-201ENST00000308271 POLA1P09884 1462 aaPredicted RBP23.6■■□□□ 1.37
USP48-201ENST00000308271 EPRSP07814 1512 aaKnown RBP23.59■■□□□ 1.37
USP48-201ENST00000308271 GCC1Q96CN9 775 aa23.59■■□□□ 1.37
USP48-201ENST00000308271 EXOSC9Q06265 439 aaKnown RBP23.59■■□□□ 1.37
USP48-201ENST00000308271 AMER1Q5JTC6 1135 aaPredicted RBP23.59■■□□□ 1.37
USP48-201ENST00000308271 KIF3AQ9Y496 699 aa23.57■■□□□ 1.36
USP48-201ENST00000308271 TOPBP1Q92547 1522 aa23.57■■□□□ 1.36
USP48-201ENST00000308271 ANO2Q9NQ90 1003 aa23.56■■□□□ 1.36
USP48-201ENST00000308271 BIVM-ERCC5R4GMW8 1640 aa23.56■■□□□ 1.36
USP48-201ENST00000308271 GNL2Q13823 731 aaKnown RBP23.56■■□□□ 1.36
USP48-201ENST00000308271 GOLGA6L19H0YKK7 550 aa23.55■■□□□ 1.36
USP48-201ENST00000308271 TNNT3P45378 269 aaPredicted RBP23.55■■□□□ 1.36
USP48-201ENST00000308271 K7ELQ4 463 aaPredicted RBP23.55■■□□□ 1.36
USP48-201ENST00000308271 HSP90B1P14625 803 aaKnown RBP23.54■■□□□ 1.36
USP48-201ENST00000308271 DIAPH3Q9NSV4 1193 aa23.54■■□□□ 1.36
USP48-201ENST00000308271 PRG4Q92954 1404 aaPredicted RBP23.54■■□□□ 1.36
USP48-201ENST00000308271 PEG3Q9GZU2 1588 aa23.53■■□□□ 1.36
USP48-201ENST00000308271 CFAP70Q5T0N1 1121 aa23.53■■□□□ 1.36
USP48-201ENST00000308271 GRIN2BQ13224 1484 aa23.53■■□□□ 1.36
USP48-201ENST00000308271 RNF214Q8ND24 703 aa23.53■■□□□ 1.36
USP48-201ENST00000308271 COG3Q96JB2 828 aa23.53■■□□□ 1.36
USP48-201ENST00000308271 ABCC5O15440 1437 aa23.53■■□□□ 1.36
USP48-201ENST00000308271 DUSP27Q5VZP5 1158 aa23.52■■□□□ 1.36
USP48-201ENST00000308271 ATF7IPQ6VMQ6 1270 aa23.52■■□□□ 1.36
USP48-201ENST00000308271 CWC22Q9HCG8 908 aaKnown RBP23.52■■□□□ 1.36
USP48-201ENST00000308271 WWC1Q8IX03 1113 aa23.52■■□□□ 1.36
Retrieved 100 of 20,778 RNA–protein pairs in 14.5 ms