RNA–Protein interactions for RNA: ENST00000295522.3

CLDN1-201, Transcript of claudin 1, humanhuman

APPRIS P1 TSL 1 (best) BASIC

Gene CLDN1, Length 3,481 nt, Biotype protein coding, Subcellular localisation Endoplasmic reticulum .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CLDN1-201ENST00000295522 FTSJ3Q8IY81 847 aaKnown RBP12.78□□□□□ -0.36
CLDN1-201ENST00000295522 PER1O15534 1290 aaPredicted RBP12.77□□□□□ -0.36
CLDN1-201ENST00000295522 RWDD1Q9H446 243 aaPredicted RBP12.77□□□□□ -0.36
CLDN1-201ENST00000295522 PPP2R1AP30153 589 aa12.77□□□□□ -0.37
CLDN1-201ENST00000295522 PCDHB15Q9Y5E8 787 aa12.77□□□□□ -0.37
CLDN1-201ENST00000295522 EFCAB5A4FU69 1503 aa12.77□□□□□ -0.37
CLDN1-201ENST00000295522 PDE4CQ08493 712 aa12.76□□□□□ -0.37
CLDN1-201ENST00000295522 OFD1O75665 1012 aa12.76□□□□□ -0.37
CLDN1-201ENST00000295522 FGD1P98174 961 aa12.76□□□□□ -0.37
CLDN1-201ENST00000295522 DMRT2Q9Y5R5 561 aa12.76□□□□□ -0.37
CLDN1-201ENST00000295522 THOC2Q8NI27 1593 aaKnown RBP12.76□□□□□ -0.37
CLDN1-201ENST00000295522 WDR62O43379 1518 aa12.76□□□□□ -0.37
CLDN1-201ENST00000295522 BBXQ8WY36 941 aaPredicted RBP12.75□□□□□ -0.37
CLDN1-201ENST00000295522 CAVIN1Q6NZI2 390 aaKnown RBP12.75□□□□□ -0.37
CLDN1-201ENST00000295522 SNAPC4Q5SXM2 1469 aa12.75□□□□□ -0.37
CLDN1-201ENST00000295522 E9PSI1 815 aa12.75□□□□□ -0.37
CLDN1-201ENST00000295522 TSPY4P0CV99 314 aa12.75□□□□□ -0.37
CLDN1-201ENST00000295522 TSPY10P0CW01 314 aa12.75□□□□□ -0.37
CLDN1-201ENST00000295522 MAP7D2Q96T17 732 aa12.75□□□□□ -0.37
CLDN1-201ENST00000295522 EHBP1L1Q8N3D4 1523 aa12.75□□□□□ -0.37
CLDN1-201ENST00000295522 MAPK8IP2Q13387 824 aaPredicted RBP12.74□□□□□ -0.37
CLDN1-201ENST00000295522 EIF3AQ14152 1382 aaKnown RBP12.74□□□□□ -0.37
CLDN1-201ENST00000295522 CBX1P83916 185 aa12.74□□□□□ -0.37
CLDN1-201ENST00000295522 KIAA1107Q9UPP5 1409 aa12.73□□□□□ -0.37
CLDN1-201ENST00000295522 TARBP1Q13395 1621 aaKnown RBP12.73□□□□□ -0.37
CLDN1-201ENST00000295522 SKOR2Q2VWA4 1001 aaPredicted RBP12.73□□□□□ -0.37
CLDN1-201ENST00000295522 FOXD4L5Q5VV16 416 aaPredicted RBP12.73□□□□□ -0.37
CLDN1-201ENST00000295522 RNF214Q8ND24 703 aa12.73□□□□□ -0.37
CLDN1-201ENST00000295522 CHMP7Q8WUX9 453 aaPredicted RBP12.73□□□□□ -0.37
CLDN1-201ENST00000295522 FOXD4L4Q8WXT5 416 aaPredicted RBP12.73□□□□□ -0.37
CLDN1-201ENST00000295522 DAPK1P53355 1430 aa12.73□□□□□ -0.37
CLDN1-201ENST00000295522 MCTP1Q6DN14 999 aa12.72□□□□□ -0.37
CLDN1-201ENST00000295522 TSC1Q92574 1164 aa12.72□□□□□ -0.37
CLDN1-201ENST00000295522 ISY1Q9ULR0 285 aaKnown RBP12.72□□□□□ -0.37
CLDN1-201ENST00000295522 SSFA2P28290 1259 aa12.72□□□□□ -0.37
CLDN1-201ENST00000295522 PDE3AQ14432 1141 aa12.72□□□□□ -0.37
CLDN1-201ENST00000295522 FAM177BA6PVY3 158 aa12.71□□□□□ -0.37
CLDN1-201ENST00000295522 IGSF3O75054 1194 aa12.71□□□□□ -0.37
CLDN1-201ENST00000295522 RLBP1P12271 317 aa12.71□□□□□ -0.37
CLDN1-201ENST00000295522 DISP3Q9P2K9 1392 aa12.71□□□□□ -0.37
CLDN1-201ENST00000295522 UGGT2Q9NYU1 1516 aa12.71□□□□□ -0.37
CLDN1-201ENST00000295522 IFT140Q96RY7 1462 aa12.71□□□□□ -0.38
CLDN1-201ENST00000295522 BLMP54132 1417 aaPredicted RBP12.71□□□□□ -0.38
CLDN1-201ENST00000295522 ZMYM4Q5VZL5 1548 aa12.7□□□□□ -0.38
CLDN1-201ENST00000295522 HNRNPMP52272 730 aaKnown RBP eCLIP12.7□□□□□ -0.38
CLDN1-201ENST00000295522 ITPRIPQ8IWB1 547 aa12.7□□□□□ -0.38
CLDN1-201ENST00000295522 ABCC5O15440 1437 aa12.7□□□□□ -0.38
CLDN1-201ENST00000295522 KDM5CP41229 1560 aa12.7□□□□□ -0.38
CLDN1-201ENST00000295522 JARID2Q92833 1246 aaPredicted RBP12.7□□□□□ -0.38
CLDN1-201ENST00000295522 NKTRP30414 1462 aaKnown RBP12.69□□□□□ -0.38
CLDN1-201ENST00000295522 LNPKQ9C0E8 428 aa12.69□□□□□ -0.38
CLDN1-201ENST00000295522 GRIN2BQ13224 1484 aa12.69□□□□□ -0.38
CLDN1-201ENST00000295522 MAGI3Q5TCQ9 1506 aa12.68□□□□□ -0.38
CLDN1-201ENST00000295522 PLEKHD1A6NEE1 506 aa12.68□□□□□ -0.38
CLDN1-201ENST00000295522 PLCB2Q00722 1185 aa12.68□□□□□ -0.38
CLDN1-201ENST00000295522 GCC2Q8IWJ2 1684 aa12.68□□□□□ -0.38
CLDN1-201ENST00000295522 PLEKHH2Q8IVE3 1493 aa12.68□□□□□ -0.38
CLDN1-201ENST00000295522 SMAP1Q8IYB5 467 aaPredicted RBP12.68□□□□□ -0.38
CLDN1-201ENST00000295522 RBM42Q9BTD8 480 aaKnown RBP12.67□□□□□ -0.38
CLDN1-201ENST00000295522 EPRSP07814 1512 aaKnown RBP12.67□□□□□ -0.38
CLDN1-201ENST00000295522 POLR1AO95602 1720 aaPredicted RBP12.67□□□□□ -0.38
CLDN1-201ENST00000295522 FOXD4L6Q3SYB3 417 aaPredicted RBP12.67□□□□□ -0.38
CLDN1-201ENST00000295522 FOXD4L3Q6VB84 417 aaPredicted RBP12.67□□□□□ -0.38
CLDN1-201ENST00000295522 RALGAPBQ86X10 1494 aa12.66□□□□□ -0.38
CLDN1-201ENST00000295522 SPDYE4A6NLX3 237 aa12.66□□□□□ -0.38
CLDN1-201ENST00000295522 CDK11BP21127 795 aaKnown RBP12.66□□□□□ -0.38
CLDN1-201ENST00000295522 BCL11BQ9C0K0 894 aaPredicted RBP12.66□□□□□ -0.38
CLDN1-201ENST00000295522 RBM27Q9P2N5 1060 aaKnown RBP12.66□□□□□ -0.38
CLDN1-201ENST00000295522 PZPP20742 1482 aa12.66□□□□□ -0.38
CLDN1-201ENST00000295522 PRG4Q92954 1404 aaPredicted RBP12.65□□□□□ -0.38
CLDN1-201ENST00000295522 VGLL3A8MV65 326 aa12.65□□□□□ -0.38
CLDN1-201ENST00000295522 CHMP4BQ9H444 224 aaKnown RBP12.65□□□□□ -0.38
CLDN1-201ENST00000295522 PRPF40AO75400 957 aaKnown RBP12.64□□□□□ -0.39
CLDN1-201ENST00000295522 MTERF4Q7Z6M4 381 aaKnown RBP12.64□□□□□ -0.39
CLDN1-201ENST00000295522 EIF4G3O43432 1585 aaKnown RBP12.64□□□□□ -0.39
CLDN1-201ENST00000295522 CSPP1Q1MSJ5 1256 aa12.64□□□□□ -0.39
CLDN1-201ENST00000295522 TCOF1Q13428 1488 aaKnown RBP12.64□□□□□ -0.39
CLDN1-201ENST00000295522 DYNC1I1O14576 645 aa12.63□□□□□ -0.39
CLDN1-201ENST00000295522 SLC24A1O60721 1099 aa12.63□□□□□ -0.39
CLDN1-201ENST00000295522 PTMSP20962 102 aa12.63□□□□□ -0.39
CLDN1-201ENST00000295522 RARSP54136 660 aaKnown RBP12.63□□□□□ -0.39
CLDN1-201ENST00000295522 SMC4Q9NTJ3 1288 aa12.63□□□□□ -0.39
CLDN1-201ENST00000295522 ROCK1Q13464 1354 aa12.63□□□□□ -0.39
CLDN1-201ENST00000295522 ANKRD30AQ9BXX3 1397 aa12.63□□□□□ -0.39
CLDN1-201ENST00000295522 KIF14Q15058 1648 aa12.63□□□□□ -0.39
CLDN1-201ENST00000295522 NLRP1Q9C000 1473 aa12.63□□□□□ -0.39
CLDN1-201ENST00000295522 RAB3GAP1Q15042 981 aa12.63□□□□□ -0.39
CLDN1-201ENST00000295522 PPP1R9BQ96SB3 815 aa12.63□□□□□ -0.39
CLDN1-201ENST00000295522 RBSNQ9H1K0 784 aa12.63□□□□□ -0.39
CLDN1-201ENST00000295522 ZNF521Q96K83 1311 aa12.63□□□□□ -0.39
CLDN1-201ENST00000295522 PRIM1P49642 420 aaKnown RBP12.63□□□□□ -0.39
CLDN1-201ENST00000295522 WWC1Q8IX03 1113 aa12.63□□□□□ -0.39
CLDN1-201ENST00000295522 SASS6Q6UVJ0 657 aa12.62□□□□□ -0.39
CLDN1-201ENST00000295522 SENP3Q9H4L4 574 aaPredicted RBP12.62□□□□□ -0.39
CLDN1-201ENST00000295522 ANKRD50Q9ULJ7 1429 aa12.62□□□□□ -0.39
CLDN1-201ENST00000295522 CD2BP2O95400 341 aaKnown RBP12.62□□□□□ -0.39
CLDN1-201ENST00000295522 BAG4O95429 457 aaKnown RBP12.62□□□□□ -0.39
CLDN1-201ENST00000295522 SYCE3A1L190 88 aa12.61□□□□□ -0.39
CLDN1-201ENST00000295522 ZSCAN23Q3MJ62 389 aa12.61□□□□□ -0.39
CLDN1-201ENST00000295522 PLCD3Q8N3E9 789 aa12.61□□□□□ -0.39
Retrieved 100 of 20,778 RNA–protein pairs in 33.8 ms