RNA–Protein interactions for RNA: ENST00000265619.6

VAPB-201, Transcript of VAMP associated protein B and C, humanhuman

TSL 2

Gene VAPB, Length 3,596 nt, Biotype processed transcript, Subcellular localisation Cytosol, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
VAPB-201ENST00000265619 CDC42BPAQ5VT25 1732 aa11.27□□□□□ -0.6
VAPB-201ENST00000265619 ITSN2Q9NZM3 1697 aa11.27□□□□□ -0.61
VAPB-201ENST00000265619 ABCC10Q5T3U5 1492 aa11.27□□□□□ -0.61
VAPB-201ENST00000265619 CENPQQ7L2Z9 268 aaPredicted RBP11.27□□□□□ -0.61
VAPB-201ENST00000265619 GAS2L3Q86XJ1 694 aa11.26□□□□□ -0.61
VAPB-201ENST00000265619 GEMIN5Q8TEQ6 1508 aaKnown RBP eCLIP11.26□□□□□ -0.61
VAPB-201ENST00000265619 ASXL2Q76L83 1435 aa11.26□□□□□ -0.61
VAPB-201ENST00000265619 DNMT1P26358 1616 aaKnown RBP11.26□□□□□ -0.61
VAPB-201ENST00000265619 ZCCHC11Q5TAX3 1644 aaKnown RBP11.26□□□□□ -0.61
VAPB-201ENST00000265619 FAM69CQ0P6D2 419 aa11.26□□□□□ -0.61
VAPB-201ENST00000265619 MLECQ14165 292 aa11.26□□□□□ -0.61
VAPB-201ENST00000265619 TEX14Q8IWB6 1497 aa11.26□□□□□ -0.61
VAPB-201ENST00000265619 NLRP1Q9C000 1473 aa11.26□□□□□ -0.61
VAPB-201ENST00000265619 TPM2P07951 284 aa11.25□□□□□ -0.61
VAPB-201ENST00000265619 GRPEL1Q9HAV7 217 aa11.25□□□□□ -0.61
VAPB-201ENST00000265619 FAM13BQ9NYF5 915 aa11.25□□□□□ -0.61
VAPB-201ENST00000265619 SCAPERQ9BY12 1400 aa11.25□□□□□ -0.61
VAPB-201ENST00000265619 MCM4P33991 863 aa11.25□□□□□ -0.61
VAPB-201ENST00000265619 C14orf37Q86TY3 774 aa11.25□□□□□ -0.61
VAPB-201ENST00000265619 MYH16Q9H6N6 1097 aa11.25□□□□□ -0.61
VAPB-201ENST00000265619 TRAPPC8Q9Y2L5 1435 aa11.24□□□□□ -0.61
VAPB-201ENST00000265619 GTF2E1P29083 439 aaPredicted RBP11.24□□□□□ -0.61
VAPB-201ENST00000265619 TBC1D2Q9BYX2 928 aa11.24□□□□□ -0.61
VAPB-201ENST00000265619 CCDC141Q6ZP82 1450 aa11.24□□□□□ -0.61
VAPB-201ENST00000265619 TRAK2O60296 914 aa11.23□□□□□ -0.61
VAPB-201ENST00000265619 VIRMAQ69YN4 1812 aaKnown RBP11.23□□□□□ -0.61
VAPB-201ENST00000265619 IGHDP01880 384 aa11.23□□□□□ -0.61
VAPB-201ENST00000265619 BBXQ8WY36 941 aaPredicted RBP11.23□□□□□ -0.61
VAPB-201ENST00000265619 ROCK1Q13464 1354 aa11.22□□□□□ -0.61
VAPB-201ENST00000265619 SAMD9LQ8IVG5 1584 aa11.22□□□□□ -0.61
VAPB-201ENST00000265619 MRE11P49959 708 aa11.22□□□□□ -0.61
VAPB-201ENST00000265619 PLEKHH2Q8IVE3 1493 aa11.22□□□□□ -0.61
VAPB-201ENST00000265619 USP47Q96K76 1375 aa11.22□□□□□ -0.61
VAPB-201ENST00000265619 NUTM2DQ5VT03 806 aaPredicted RBP11.22□□□□□ -0.61
VAPB-201ENST00000265619 ADCY10Q96PN6 1610 aa11.22□□□□□ -0.61
VAPB-201ENST00000265619 MYBBP1AQ9BQG0 1328 aaKnown RBP11.21□□□□□ -0.61
VAPB-201ENST00000265619 WDR7Q9Y4E6 1490 aa11.21□□□□□ -0.62
VAPB-201ENST00000265619 HAP1P54257 671 aaPredicted RBP11.21□□□□□ -0.62
VAPB-201ENST00000265619 BRD4O60885 1362 aaPredicted RBP11.2□□□□□ -0.62
VAPB-201ENST00000265619 CDC42BPBQ9Y5S2 1711 aa11.2□□□□□ -0.62
VAPB-201ENST00000265619 CHMP4BQ9H444 224 aaKnown RBP11.2□□□□□ -0.62
VAPB-201ENST00000265619 FANCAO15360 1455 aa11.2□□□□□ -0.62
VAPB-201ENST00000265619 RSPH4AQ5TD94 716 aa11.19□□□□□ -0.62
VAPB-201ENST00000265619 CARD11Q9BXL7 1154 aa11.19□□□□□ -0.62
VAPB-201ENST00000265619 PLCH2O75038 1416 aa11.19□□□□□ -0.62
VAPB-201ENST00000265619 ARHGEF12Q9NZN5 1544 aa11.19□□□□□ -0.62
VAPB-201ENST00000265619 PDE3BQ13370 1112 aa11.19□□□□□ -0.62
VAPB-201ENST00000265619 ANKRD30BQ9BXX2 1392 aa11.19□□□□□ -0.62
VAPB-201ENST00000265619 RPRD2Q5VT52 1461 aaKnown RBP11.19□□□□□ -0.62
VAPB-201ENST00000265619 GCC2Q8IWJ2 1684 aa11.19□□□□□ -0.62
VAPB-201ENST00000265619 MBD5Q9P267 1494 aa11.18□□□□□ -0.62
VAPB-201ENST00000265619 TRHP20396 242 aaPredicted RBP11.18□□□□□ -0.62
VAPB-201ENST00000265619 STAC3Q96MF2 364 aa11.18□□□□□ -0.62
VAPB-201ENST00000265619 JARID2Q92833 1246 aaPredicted RBP11.18□□□□□ -0.62
VAPB-201ENST00000265619 ADGRL1O94910 1474 aa11.18□□□□□ -0.62
VAPB-201ENST00000265619 CD109Q6YHK3 1445 aa11.18□□□□□ -0.62
VAPB-201ENST00000265619 BECN1Q14457 450 aa11.17□□□□□ -0.62
VAPB-201ENST00000265619 TAF7LQ5H9L4 462 aa11.17□□□□□ -0.62
VAPB-201ENST00000265619 TRIM44Q96DX7 344 aaPredicted RBP11.17□□□□□ -0.62
VAPB-201ENST00000265619 R3HCC1Q9Y3T6 440 aaKnown RBP11.17□□□□□ -0.62
VAPB-201ENST00000265619 MYO5CQ9NQX4 1742 aa11.17□□□□□ -0.62
VAPB-201ENST00000265619 PZPP20742 1482 aa11.17□□□□□ -0.62
VAPB-201ENST00000265619 KIAA1107Q9UPP5 1409 aa11.16□□□□□ -0.62
VAPB-201ENST00000265619 PREX2Q70Z35 1606 aa11.16□□□□□ -0.62
VAPB-201ENST00000265619 OFD1O75665 1012 aa11.16□□□□□ -0.62
VAPB-201ENST00000265619 CFAP65Q6ZU64 1925 aaKnown RBP11.15□□□□□ -0.62
VAPB-201ENST00000265619 NAP1L2Q9ULW6 460 aaPredicted RBP11.15□□□□□ -0.62
VAPB-201ENST00000265619 KDM5CP41229 1560 aa11.15□□□□□ -0.62
VAPB-201ENST00000265619 SMAP1Q8IYB5 467 aaPredicted RBP11.15□□□□□ -0.63
VAPB-201ENST00000265619 TAOK2Q9UL54 1235 aa11.14□□□□□ -0.63
VAPB-201ENST00000265619 CCDC144AA2RUR9 1427 aa11.14□□□□□ -0.63
VAPB-201ENST00000265619 DUSP27Q5VZP5 1158 aa11.13□□□□□ -0.63
VAPB-201ENST00000265619 ZSCAN20P17040 1043 aaPredicted RBP11.13□□□□□ -0.63
VAPB-201ENST00000265619 PLEKHH1Q9ULM0 1364 aa11.13□□□□□ -0.63
VAPB-201ENST00000265619 VGLL3A8MV65 326 aa11.13□□□□□ -0.63
VAPB-201ENST00000265619 BCAR3O75815 825 aa11.13□□□□□ -0.63
VAPB-201ENST00000265619 NBPF1Q3BBV0 1214 aa11.13□□□□□ -0.63
VAPB-201ENST00000265619 TBC1D32Q96NH3 1257 aa11.13□□□□□ -0.63
VAPB-201ENST00000265619 XPCQ01831 940 aaPredicted RBP11.12□□□□□ -0.63
VAPB-201ENST00000265619 UQCRHLA0A096LP55 91 aa11.12□□□□□ -0.63
VAPB-201ENST00000265619 UQCRHP07919 91 aa11.12□□□□□ -0.63
VAPB-201ENST00000265619 CC2D1BQ5T0F9 858 aaKnown RBP11.12□□□□□ -0.63
VAPB-201ENST00000265619 ADGBQ8N7X0 1667 aa11.12□□□□□ -0.63
VAPB-201ENST00000265619 ST20-MTHFSA0A0A6YYL1 179 aa11.12□□□□□ -0.63
VAPB-201ENST00000265619 RALBP1Q15311 655 aa11.12□□□□□ -0.63
VAPB-201ENST00000265619 NLRP13Q86W25 1043 aa11.12□□□□□ -0.63
VAPB-201ENST00000265619 ZNF692Q9BU19 519 aaPredicted RBP11.12□□□□□ -0.63
VAPB-201ENST00000265619 UHRF1BP1LA0JNW5 1464 aa11.11□□□□□ -0.63
VAPB-201ENST00000265619 SPINK5Q9NQ38 1064 aaPredicted RBP11.11□□□□□ -0.63
VAPB-201ENST00000265619 DMTNQ08495 405 aa11.11□□□□□ -0.63
VAPB-201ENST00000265619 EIF2AK3Q9NZJ5 1116 aaKnown RBP11.11□□□□□ -0.63
VAPB-201ENST00000265619 ZBTB7CA1YPR0 619 aa11.11□□□□□ -0.63
VAPB-201ENST00000265619 ZBTB22O15209 634 aa11.11□□□□□ -0.63
VAPB-201ENST00000265619 TSC1Q92574 1164 aa11.11□□□□□ -0.63
VAPB-201ENST00000265619 TSPOAP1O95153 1857 aa11.1□□□□□ -0.63
VAPB-201ENST00000265619 BLMP54132 1417 aaPredicted RBP11.1□□□□□ -0.63
VAPB-201ENST00000265619 TPRNQ4KMQ1 711 aa11.1□□□□□ -0.63
VAPB-201ENST00000265619 DHX37Q8IY37 1157 aaKnown RBP11.1□□□□□ -0.63
VAPB-201ENST00000265619 ADGRL2O95490 1459 aa11.1□□□□□ -0.63
VAPB-201ENST00000265619 ROCK2O75116 1388 aaKnown RBP11.1□□□□□ -0.63
Retrieved 100 of 20,778 RNA–protein pairs in 22.5 ms