RNA–Protein interactions for RNA: ENST00000263187.3

MSH4-201, Transcript of mutS homolog 4, humanhuman

APPRIS P1 TSL 1 (best) BASIC

Gene MSH4, Length 3,266 nt, Biotype protein coding.

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
MSH4-201ENST00000263187 COL17A1Q9UMD9 1497 aaPredicted RBP11.97□□□□□ -0.49
MSH4-201ENST00000263187 DMRT2Q9Y5R5 561 aa11.96□□□□□ -0.49
MSH4-201ENST00000263187 DUSP27Q5VZP5 1158 aa11.96□□□□□ -0.49
MSH4-201ENST00000263187 IL27Q8NEV9 243 aa11.96□□□□□ -0.49
MSH4-201ENST00000263187 RRP7AQ9Y3A4 280 aaKnown RBP11.96□□□□□ -0.49
MSH4-201ENST00000263187 GOLGA2Q08379 1002 aa11.96□□□□□ -0.5
MSH4-201ENST00000263187 AMER1Q5JTC6 1135 aaPredicted RBP11.96□□□□□ -0.5
MSH4-201ENST00000263187 MAGI2Q86UL8 1455 aa11.95□□□□□ -0.5
MSH4-201ENST00000263187 TRPM1Q7Z4N2 1603 aa11.95□□□□□ -0.5
MSH4-201ENST00000263187 KIF3BO15066 747 aa11.95□□□□□ -0.5
MSH4-201ENST00000263187 EFCAB2Q5VUJ9 269 aa11.95□□□□□ -0.5
MSH4-201ENST00000263187 NUTM2DQ5VT03 806 aaPredicted RBP11.95□□□□□ -0.5
MSH4-201ENST00000263187 SPAG9O60271 1321 aaKnown RBP11.94□□□□□ -0.5
MSH4-201ENST00000263187 DAXXQ9UER7 740 aaPredicted RBP11.94□□□□□ -0.5
MSH4-201ENST00000263187 CFAP74Q9C0B2 1584 aa11.94□□□□□ -0.5
MSH4-201ENST00000263187 TRAPPC8Q9Y2L5 1435 aa11.94□□□□□ -0.5
MSH4-201ENST00000263187 GPRASP1Q5JY77 1395 aa11.93□□□□□ -0.5
MSH4-201ENST00000263187 FRAT1Q92837 279 aaPredicted RBP11.93□□□□□ -0.5
MSH4-201ENST00000263187 TSPOAP1O95153 1857 aa11.92□□□□□ -0.5
MSH4-201ENST00000263187 ARHGEF5Q12774 1597 aa11.92□□□□□ -0.5
MSH4-201ENST00000263187 E9PCH4 1651 aa11.92□□□□□ -0.5
MSH4-201ENST00000263187 CANXP27824 592 aaKnown RBP11.92□□□□□ -0.5
MSH4-201ENST00000263187 BCL2L13Q9BXK5 485 aa11.92□□□□□ -0.5
MSH4-201ENST00000263187 MS4A1P11836 297 aa11.91□□□□□ -0.5
MSH4-201ENST00000263187 BLMP54132 1417 aaPredicted RBP11.91□□□□□ -0.5
MSH4-201ENST00000263187 PLCH2O75038 1416 aa11.91□□□□□ -0.5
MSH4-201ENST00000263187 WASHC2CQ9Y4E1 1318 aa11.91□□□□□ -0.5
MSH4-201ENST00000263187 TRAK1Q9UPV9 953 aa11.9□□□□□ -0.5
MSH4-201ENST00000263187 ADGRF5Q8IZF2 1346 aa11.9□□□□□ -0.5
MSH4-201ENST00000263187 PANK1Q8TE04 598 aa11.9□□□□□ -0.5
MSH4-201ENST00000263187 CARD14Q9BXL6 1004 aa11.89□□□□□ -0.51
MSH4-201ENST00000263187 SLFN5Q08AF3 891 aa11.89□□□□□ -0.51
MSH4-201ENST00000263187 SAFB2Q14151 953 aaKnown RBP eCLIP11.89□□□□□ -0.51
MSH4-201ENST00000263187 COG6Q9Y2V7 657 aa11.89□□□□□ -0.51
MSH4-201ENST00000263187 PRDM15P57071 1507 aaPredicted RBP11.89□□□□□ -0.51
MSH4-201ENST00000263187 TMEM132EQ6IEE7 984 aa11.89□□□□□ -0.51
MSH4-201ENST00000263187 CD109Q6YHK3 1445 aa11.89□□□□□ -0.51
MSH4-201ENST00000263187 IGHDP01880 384 aa11.87□□□□□ -0.51
MSH4-201ENST00000263187 CLUAP1Q96AJ1 413 aa11.87□□□□□ -0.51
MSH4-201ENST00000263187 TNNQ9UQP3 1299 aa11.87□□□□□ -0.51
MSH4-201ENST00000263187 NEO1Q92859 1461 aa11.87□□□□□ -0.51
MSH4-201ENST00000263187 KDM2BQ8NHM5 1336 aa11.87□□□□□ -0.51
MSH4-201ENST00000263187 ABCC1P33527 1531 aa11.87□□□□□ -0.51
MSH4-201ENST00000263187 CENPQQ7L2Z9 268 aaPredicted RBP11.87□□□□□ -0.51
MSH4-201ENST00000263187 RICTORQ6R327 1708 aa11.87□□□□□ -0.51
MSH4-201ENST00000263187 GOLGA6L2Q8N9W4 650 aaPredicted RBP11.87□□□□□ -0.51
MSH4-201ENST00000263187 FRMPD1Q5SYB0 1578 aa11.86□□□□□ -0.51
MSH4-201ENST00000263187 CDCA8Q53HL2 280 aa11.86□□□□□ -0.51
MSH4-201ENST00000263187 SLC12A5Q9H2X9 1139 aa11.86□□□□□ -0.51
MSH4-201ENST00000263187 ZMYM4Q5VZL5 1548 aa11.86□□□□□ -0.51
MSH4-201ENST00000263187 FAM69CQ0P6D2 419 aa11.86□□□□□ -0.51
MSH4-201ENST00000263187 C8orf34Q49A92 452 aa11.86□□□□□ -0.51
MSH4-201ENST00000263187 NFKBIBQ15653 356 aa11.85□□□□□ -0.51
MSH4-201ENST00000263187 GGT6Q6P531 493 aa11.85□□□□□ -0.51
MSH4-201ENST00000263187 FAM161AQ3B820 660 aa11.85□□□□□ -0.51
MSH4-201ENST00000263187 FANCAO15360 1455 aa11.85□□□□□ -0.51
MSH4-201ENST00000263187 ZNF521Q96K83 1311 aa11.84□□□□□ -0.51
MSH4-201ENST00000263187 UGGT1Q9NYU2 1555 aa11.84□□□□□ -0.51
MSH4-201ENST00000263187 SCAPERQ9BY12 1400 aa11.84□□□□□ -0.51
MSH4-201ENST00000263187 BRPF3Q9ULD4 1205 aa11.84□□□□□ -0.51
MSH4-201ENST00000263187 PPM1GO15355 546 aaPredicted RBP11.84□□□□□ -0.51
MSH4-201ENST00000263187 MORC1Q86VD1 984 aa11.84□□□□□ -0.51
MSH4-201ENST00000263187 DDRGK1Q96HY6 314 aa11.84□□□□□ -0.51
MSH4-201ENST00000263187 DUOX2Q9NRD8 1548 aa11.83□□□□□ -0.51
MSH4-201ENST00000263187 SEC24BO95487 1268 aa11.83□□□□□ -0.52
MSH4-201ENST00000263187 FRAT2O75474 233 aaPredicted RBP11.82□□□□□ -0.52
MSH4-201ENST00000263187 ARXQ96QS3 562 aa11.82□□□□□ -0.52
MSH4-201ENST00000263187 UNC13BO14795 1591 aa11.82□□□□□ -0.52
MSH4-201ENST00000263187 SPRYD3Q8NCJ5 442 aa11.82□□□□□ -0.52
MSH4-201ENST00000263187 SCAF11Q99590 1463 aaKnown RBP11.82□□□□□ -0.52
MSH4-201ENST00000263187 MAST1Q9Y2H9 1570 aa11.81□□□□□ -0.52
MSH4-201ENST00000263187 ATP10AO60312 1499 aa11.81□□□□□ -0.52
MSH4-201ENST00000263187 IQGAP3Q86VI3 1631 aa11.81□□□□□ -0.52
MSH4-201ENST00000263187 SLKQ9H2G2 1235 aaPredicted RBP11.81□□□□□ -0.52
MSH4-201ENST00000263187 ANO8Q9HCE9 1232 aaPredicted RBP11.81□□□□□ -0.52
MSH4-201ENST00000263187 CENPJQ9HC77 1338 aaPredicted RBP11.8□□□□□ -0.52
MSH4-201ENST00000263187 WWC1Q8IX03 1113 aa11.8□□□□□ -0.52
MSH4-201ENST00000263187 E9PSI1 815 aa11.8□□□□□ -0.52
MSH4-201ENST00000263187 ASXL1Q8IXJ9 1541 aa11.8□□□□□ -0.52
MSH4-201ENST00000263187 ZBTB4Q9P1Z0 1013 aaPredicted RBP11.79□□□□□ -0.52
MSH4-201ENST00000263187 STK26Q9P289 416 aa11.79□□□□□ -0.52
MSH4-201ENST00000263187 KANK1Q14678 1352 aa11.79□□□□□ -0.52
MSH4-201ENST00000263187 TCP11L2Q8N4U5 519 aa11.79□□□□□ -0.52
MSH4-201ENST00000263187 EIF2AK4Q9P2K8 1649 aaKnown RBP11.78□□□□□ -0.52
MSH4-201ENST00000263187 RLBP1P12271 317 aa11.78□□□□□ -0.52
MSH4-201ENST00000263187 MTHFSP49914 203 aa11.78□□□□□ -0.52
MSH4-201ENST00000263187 INO80Q9ULG1 1556 aaPredicted RBP11.78□□□□□ -0.52
MSH4-201ENST00000263187 EIF3AQ14152 1382 aaKnown RBP11.78□□□□□ -0.52
MSH4-201ENST00000263187 ADGRL1O94910 1474 aa11.78□□□□□ -0.52
MSH4-201ENST00000263187 CFAP65Q6ZU64 1925 aaKnown RBP11.77□□□□□ -0.53
MSH4-201ENST00000263187 POGZQ7Z3K3 1410 aa11.77□□□□□ -0.53
MSH4-201ENST00000263187 U2AF1L5P0DN76 240 aaPredicted RBP11.77□□□□□ -0.53
MSH4-201ENST00000263187 U2AF1Q01081 240 aaKnown RBP eCLIP11.77□□□□□ -0.53
MSH4-201ENST00000263187 GSE1Q14687 1217 aa11.77□□□□□ -0.53
MSH4-201ENST00000263187 NKTRP30414 1462 aaKnown RBP11.77□□□□□ -0.53
MSH4-201ENST00000263187 TRMT2AQ8IZ69 625 aaKnown RBP11.77□□□□□ -0.53
MSH4-201ENST00000263187 TSR2Q969E8 191 aaKnown RBP11.76□□□□□ -0.53
MSH4-201ENST00000263187 CABP2Q9NPB3 220 aa11.76□□□□□ -0.53
MSH4-201ENST00000263187 MADDQ8WXG6 1647 aa11.76□□□□□ -0.53
MSH4-201ENST00000263187 KIDINS220Q9ULH0 1771 aa11.76□□□□□ -0.53
Retrieved 100 of 20,778 RNA–protein pairs in 19.8 ms