RNA–Protein interactions for RNA: ENST00000254480.9

SMARCC1-201, Transcript of SWI/SNF related, matrix associated, actin dependent regulator of chromatin subfamily c member 1, humanhuman

APPRIS P1 TSL 1 (best) BASIC

Gene SMARCC1, Length 6,375 nt, Biotype protein coding, Subcellular localisation Cytosol, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SMARCC1-201ENST00000254480 A0A0U1RQG5 324 aaPredicted RBP23.03■■□□□ 1.28
SMARCC1-201ENST00000254480 FAM161AQ3B820 660 aa23.02■■□□□ 1.28
SMARCC1-201ENST00000254480 DDX49Q9Y6V7 483 aaKnown RBP23.02■■□□□ 1.28
SMARCC1-201ENST00000254480 NEXNQ0ZGT2 675 aa23.01■■□□□ 1.27
SMARCC1-201ENST00000254480 FKBP5Q13451 457 aaPredicted RBP23.01■■□□□ 1.27
SMARCC1-201ENST00000254480 TMEM132EQ6IEE7 984 aa23■■□□□ 1.27
SMARCC1-201ENST00000254480 TPD52L1Q16890 204 aaPredicted RBP23■■□□□ 1.27
SMARCC1-201ENST00000254480 GGNBP2Q9H3C7 697 aa23■■□□□ 1.27
SMARCC1-201ENST00000254480 AIMP1Q12904 312 aaKnown RBP22.99■■□□□ 1.27
SMARCC1-201ENST00000254480 AKAP17AQ02040 695 aaKnown RBP22.98■■□□□ 1.27
SMARCC1-201ENST00000254480 CABP2Q9NPB3 220 aa22.98■■□□□ 1.27
SMARCC1-201ENST00000254480 SAMD1Q6SPF0 538 aaPredicted RBP22.98■■□□□ 1.27
SMARCC1-201ENST00000254480 ANO2Q9NQ90 1003 aa22.98■■□□□ 1.27
SMARCC1-201ENST00000254480 ZNF428Q96B54 188 aa22.97■■□□□ 1.27
SMARCC1-201ENST00000254480 KLHL34Q8N239 644 aa22.97■■□□□ 1.27
SMARCC1-201ENST00000254480 UACAQ9BZF9 1416 aa22.96■■□□□ 1.27
SMARCC1-201ENST00000254480 IFIT2P09913 472 aaKnown RBP22.96■■□□□ 1.27
SMARCC1-201ENST00000254480 FAM69CQ0P6D2 419 aa22.96■■□□□ 1.27
SMARCC1-201ENST00000254480 FANCD2Q9BXW9 1451 aa22.96■■□□□ 1.27
SMARCC1-201ENST00000254480 CCAR2Q8N163 923 aaKnown RBP22.96■■□□□ 1.27
SMARCC1-201ENST00000254480 KIF3AQ9Y496 699 aa22.95■■□□□ 1.26
SMARCC1-201ENST00000254480 MEX3CQ5U5Q3 659 aaKnown RBP22.94■■□□□ 1.26
SMARCC1-201ENST00000254480 VPS37DQ86XT2 251 aa22.94■■□□□ 1.26
SMARCC1-201ENST00000254480 DHX16O60231 1041 aaKnown RBP22.94■■□□□ 1.26
SMARCC1-201ENST00000254480 TSPYL4Q9UJ04 414 aa22.94■■□□□ 1.26
SMARCC1-201ENST00000254480 DZIP1LQ8IYY4 767 aaKnown RBP22.93■■□□□ 1.26
SMARCC1-201ENST00000254480 KDM4AO75164 1064 aa22.93■■□□□ 1.26
SMARCC1-201ENST00000254480 PHF14O94880 888 aa22.93■■□□□ 1.26
SMARCC1-201ENST00000254480 TPM3P06753 285 aa22.93■■□□□ 1.26
SMARCC1-201ENST00000254480 LNPKQ9C0E8 428 aa22.93■■□□□ 1.26
SMARCC1-201ENST00000254480 SYNE3Q6ZMZ3 975 aa22.92■■□□□ 1.26
SMARCC1-201ENST00000254480 USP35Q9P2H5 1018 aa22.92■■□□□ 1.26
SMARCC1-201ENST00000254480 ZBED9Q6R2W3 1325 aa22.92■■□□□ 1.26
SMARCC1-201ENST00000254480 PANK1Q8TE04 598 aa22.91■■□□□ 1.26
SMARCC1-201ENST00000254480 ATAD2BQ9ULI0 1458 aa22.91■■□□□ 1.26
SMARCC1-201ENST00000254480 DDX11L8A8MPP1 907 aa22.9■■□□□ 1.26
SMARCC1-201ENST00000254480 CEP89Q96ST8 783 aa22.9■■□□□ 1.26
SMARCC1-201ENST00000254480 BECN2A8MW95 431 aa22.9■■□□□ 1.26
SMARCC1-201ENST00000254480 OSCARQ8IYS5 282 aa22.9■■□□□ 1.26
SMARCC1-201ENST00000254480 GOLGA6L19H0YKK7 550 aa22.89■■□□□ 1.26
SMARCC1-201ENST00000254480 FYB1O15117 783 aa22.89■■□□□ 1.26
SMARCC1-201ENST00000254480 DDX19BQ9UMR2 479 aa22.89■■□□□ 1.26
SMARCC1-201ENST00000254480 TRIM34Q9BYJ4 488 aa22.89■■□□□ 1.25
SMARCC1-201ENST00000254480 FAM177BA6PVY3 158 aa22.89■■□□□ 1.25
SMARCC1-201ENST00000254480 RAD54L2Q9Y4B4 1467 aa22.88■■□□□ 1.25
SMARCC1-201ENST00000254480 NLRP2Q9NX02 1062 aa22.88■■□□□ 1.25
SMARCC1-201ENST00000254480 G3BP1Q13283 466 aaKnown RBP eCLIP22.88■■□□□ 1.258e-7■■■□□ 14.9
SMARCC1-201ENST00000254480 NEUROD6Q96NK8 337 aa22.87■■□□□ 1.25
SMARCC1-201ENST00000254480 NOL10Q9BSC4 688 aaKnown RBP22.87■■□□□ 1.25
SMARCC1-201ENST00000254480 ZNF592Q92610 1267 aa22.87■■□□□ 1.25
SMARCC1-201ENST00000254480 MTMR7Q9Y216 660 aa22.87■■□□□ 1.25
SMARCC1-201ENST00000254480 ABCF1Q8NE71 845 aaKnown RBP eCLIP22.86■■□□□ 1.25
SMARCC1-201ENST00000254480 BCL11BQ9C0K0 894 aaPredicted RBP22.86■■□□□ 1.25
SMARCC1-201ENST00000254480 CPLX1O14810 134 aa22.86■■□□□ 1.25
SMARCC1-201ENST00000254480 GOLGA6L1Q8N7Z2 621 aa22.86■■□□□ 1.25
SMARCC1-201ENST00000254480 ZKSCAN1P17029 563 aaPredicted RBP22.85■■□□□ 1.25
SMARCC1-201ENST00000254480 VPS37CA5D8V6 355 aaPredicted RBP22.85■■□□□ 1.25
SMARCC1-201ENST00000254480 NFXL1Q6ZNB6 911 aa22.85■■□□□ 1.25
SMARCC1-201ENST00000254480 RUNDC1Q96C34 613 aa22.85■■□□□ 1.25
SMARCC1-201ENST00000254480 RIC3Q7Z5B4 369 aa22.84■■□□□ 1.25
SMARCC1-201ENST00000254480 KIF7Q2M1P5 1343 aa22.84■■□□□ 1.25
SMARCC1-201ENST00000254480 PRDM2Q13029 1718 aa22.84■■□□□ 1.25
SMARCC1-201ENST00000254480 RUFY2Q8WXA3 655 aa22.84■■□□□ 1.25
SMARCC1-201ENST00000254480 PCMTD1Q96MG8 357 aaPredicted RBP22.84■■□□□ 1.25
SMARCC1-201ENST00000254480 TRIM29Q14134 588 aa22.83■■□□□ 1.25
SMARCC1-201ENST00000254480 DDX58O95786 925 aaKnown RBP22.83■■□□□ 1.25
SMARCC1-201ENST00000254480 RAPGEF4Q8WZA2 1011 aa22.83■■□□□ 1.25
SMARCC1-201ENST00000254480 API5Q9BZZ5 524 aaKnown RBP22.83■■□□□ 1.24
SMARCC1-201ENST00000254480 TCEAL9Q9UHQ7 104 aa22.83■■□□□ 1.24
SMARCC1-201ENST00000254480 AMOTL1Q8IY63 956 aa22.82■■□□□ 1.24
SMARCC1-201ENST00000254480 BICD2Q8TD16 824 aa22.82■■□□□ 1.24
SMARCC1-201ENST00000254480 CTDP1Q9Y5B0 961 aaPredicted RBP22.82■■□□□ 1.24
SMARCC1-201ENST00000254480 REC8O95072 547 aa22.81■■□□□ 1.24
SMARCC1-201ENST00000254480 FBXO3Q9UK99 471 aa22.81■■□□□ 1.24
SMARCC1-201ENST00000254480 ATF3P18847 181 aa22.81■■□□□ 1.24
SMARCC1-201ENST00000254480 NLRP6P59044 892 aa22.81■■□□□ 1.24
SMARCC1-201ENST00000254480 TSR1Q2NL82 804 aaKnown RBP22.81■■□□□ 1.24
SMARCC1-201ENST00000254480 ATP6V1DQ9Y5K8 247 aa22.8■■□□□ 1.24
SMARCC1-201ENST00000254480 CPLX2Q6PUV4 134 aaKnown RBP22.79■■□□□ 1.24
SMARCC1-201ENST00000254480 CCDC27Q2M243 656 aa22.79■■□□□ 1.24
SMARCC1-201ENST00000254480 AFAP1Q8N556 730 aa22.79■■□□□ 1.24
SMARCC1-201ENST00000254480 TNNT3P45378 269 aaPredicted RBP22.78■■□□□ 1.24
SMARCC1-201ENST00000254480 TRDNQ13061 729 aa22.78■■□□□ 1.24
SMARCC1-201ENST00000254480 WASHC4Q2M389 1173 aa22.78■■□□□ 1.24
SMARCC1-201ENST00000254480 ADAMTS8Q9UP79 889 aa22.78■■□□□ 1.24
SMARCC1-201ENST00000254480 GSE1Q14687 1217 aa22.78■■□□□ 1.24
SMARCC1-201ENST00000254480 CDCA7LQ96GN5 454 aa22.77■■□□□ 1.24
SMARCC1-201ENST00000254480 MTHFSP49914 203 aa22.77■■□□□ 1.24
SMARCC1-201ENST00000254480 CFAP70Q5T0N1 1121 aa22.76■■□□□ 1.23
SMARCC1-201ENST00000254480 GAPVD1Q14C86 1478 aa22.76■■□□□ 1.23
SMARCC1-201ENST00000254480 FGD5Q6ZNL6 1462 aa22.76■■□□□ 1.23
SMARCC1-201ENST00000254480 C1orf115Q9H7X2 142 aa22.76■■□□□ 1.23
SMARCC1-201ENST00000254480 LRRFIP1Q32MZ4 808 aaKnown RBP22.75■■□□□ 1.23
SMARCC1-201ENST00000254480 GNAI1P63096 354 aa22.75■■□□□ 1.23
SMARCC1-201ENST00000254480 AQRO60306 1485 aaKnown RBP eCLIP22.75■■□□□ 1.233e-7■■■■■ 28.9
SMARCC1-201ENST00000254480 SMARCA4P51532 1647 aa22.75■■□□□ 1.23
SMARCC1-201ENST00000254480 CCDC7Q96M83 1385 aa22.74■■□□□ 1.23
SMARCC1-201ENST00000254480 RBM33Q96EV2 1170 aaKnown RBP22.73■■□□□ 1.23
SMARCC1-201ENST00000254480 SMC3Q9UQE7 1217 aa22.73■■□□□ 1.23
SMARCC1-201ENST00000254480 ABTB2Q8N961 1025 aa22.73■■□□□ 1.23
Retrieved 100 of 20,778 RNA–protein pairs in 12.7 ms