RNA–Protein interactions for RNA: ENSMUST00000033088.7

Rnf40-201, Transcript of E3 ubiquitin-protein ligase BRE1B, mousemouse

TSL 5 BASIC

Gene Rnf40, Length 3,906 nt, Biotype protein coding.

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RNA Protein Prediction (catRAPID) Interaction (Experimental data)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
Rnf40-201ENSMUST00000033088 Ksr2Q3UVC0 959 aa13.52□□□□□ -0.25
Rnf40-201ENSMUST00000033088 Rrp12Q6P5B0 1295 aaKnown RBP13.51□□□□□ -0.25
Rnf40-201ENSMUST00000033088 Igf1rQ60751 1373 aa13.51□□□□□ -0.25
Rnf40-201ENSMUST00000033088 Fam208aQ69ZR9 1610 aaKnown RBP13.51□□□□□ -0.25
Rnf40-201ENSMUST00000033088 Fbxo2Q80UW2 297 aa13.51□□□□□ -0.25
Rnf40-201ENSMUST00000033088 Ythdc2B2RR83 1445 aaKnown RBP13.51□□□□□ -0.25
Rnf40-201ENSMUST00000033088 Kiaa1210E9Q0C6 1637 aa13.5□□□□□ -0.25
Rnf40-201ENSMUST00000033088 Dennd4bQ3U1Y4 1499 aa13.5□□□□□ -0.25
Rnf40-201ENSMUST00000033088 Map4P27546 1125 aaKnown RBP13.5□□□□□ -0.25
Rnf40-201ENSMUST00000033088 Tnpo1Q8BFY9 898 aaKnown RBP13.5□□□□□ -0.25
Rnf40-201ENSMUST00000033088 PnisrA2AJT4 805 aaKnown RBP13.5□□□□□ -0.25
Rnf40-201ENSMUST00000033088 NhsB1AV60 1647 aa13.5□□□□□ -0.25
Rnf40-201ENSMUST00000033088 Kdm3bQ6ZPY7 1562 aa13.48□□□□□ -0.25
Rnf40-201ENSMUST00000033088 Cul7Q8VE73 1689 aa13.48□□□□□ -0.25
Rnf40-201ENSMUST00000033088 Fhod3Q76LL6 1578 aa13.48□□□□□ -0.25
Rnf40-201ENSMUST00000033088 Golga2Q921M4 999 aa13.48□□□□□ -0.25
Rnf40-201ENSMUST00000033088 Arhgap5P97393 1501 aa13.48□□□□□ -0.25
Rnf40-201ENSMUST00000033088 Rnf214Q8BFU3 668 aaKnown RBP13.48□□□□□ -0.25
Rnf40-201ENSMUST00000033088 Nutm1Q8BHP2 1126 aa13.47□□□□□ -0.25
Rnf40-201ENSMUST00000033088 U2surpQ6NV83 1029 aaKnown RBP13.47□□□□□ -0.25
Rnf40-201ENSMUST00000033088 U2af1Q9D883 239 aaKnown RBP13.47□□□□□ -0.25
Rnf40-201ENSMUST00000033088 Pibf1E9Q6K3 756 aa13.47□□□□□ -0.25
Rnf40-201ENSMUST00000033088 Atp10dQ8K2X1 1416 aa13.47□□□□□ -0.25
Rnf40-201ENSMUST00000033088 Ccdc183A2AJB1 534 aa13.46□□□□□ -0.25
Rnf40-201ENSMUST00000033088 Ccdc146E9Q9F7 977 aa13.46□□□□□ -0.25
Rnf40-201ENSMUST00000033088 Gapvd1Q6PAR5 1458 aa13.46□□□□□ -0.25
Rnf40-201ENSMUST00000033088 Nol12Q8BG17 217 aa13.46□□□□□ -0.26
Rnf40-201ENSMUST00000033088 Prkrip1Q9CWV6 186 aaKnown RBP13.45□□□□□ -0.26
Rnf40-201ENSMUST00000033088 Rnf17Q99MV7 1640 aa13.45□□□□□ -0.26
Rnf40-201ENSMUST00000033088 Tspyl2Q7TQI8 677 aa13.45□□□□□ -0.26
Rnf40-201ENSMUST00000033088 MsnP26041 577 aaKnown RBP13.44□□□□□ -0.26
Rnf40-201ENSMUST00000033088 SphkapQ6NSW3 1687 aa13.44□□□□□ -0.26
Rnf40-201ENSMUST00000033088 Casc1Q6TDU8 730 aa13.44□□□□□ -0.26
Rnf40-201ENSMUST00000033088 VgfQ0VGU4 617 aa13.43□□□□□ -0.26
Rnf40-201ENSMUST00000033088 Adgrb2Q8CGM1 1561 aa13.43□□□□□ -0.26
Rnf40-201ENSMUST00000033088 Cfap74Q3UY96 1578 aa13.42□□□□□ -0.26
Rnf40-201ENSMUST00000033088 AampJ3QN89 436 aa13.42□□□□□ -0.26
Rnf40-201ENSMUST00000033088 Abca8bQ8K440 1620 aa13.42□□□□□ -0.26
Rnf40-201ENSMUST00000033088 Hsp90b1P08113 802 aaKnown RBP13.42□□□□□ -0.26
Rnf40-201ENSMUST00000033088 Srpk2O54781 681 aaKnown RBP13.42□□□□□ -0.26
Rnf40-201ENSMUST00000033088 PtprtQ99M80 1454 aa13.41□□□□□ -0.26
Rnf40-201ENSMUST00000033088 Mbd3Q9Z2D8 285 aaKnown RBP13.41□□□□□ -0.26
Rnf40-201ENSMUST00000033088 Nectin2P32507 530 aa13.41□□□□□ -0.26
Rnf40-201ENSMUST00000033088 TimelessQ9R1X4 1197 aa13.41□□□□□ -0.26
Rnf40-201ENSMUST00000033088 Exosc9Q9JHI7 438 aaKnown RBP13.41□□□□□ -0.26
Rnf40-201ENSMUST00000033088 Mapk8ip3Q9ESN9 1337 aa13.4□□□□□ -0.26
Rnf40-201ENSMUST00000033088 Cc2d1aQ8K1A6 943 aa13.4□□□□□ -0.26
Rnf40-201ENSMUST00000033088 Map7O88735 730 aa13.4□□□□□ -0.26
Rnf40-201ENSMUST00000033088 Pdia4P08003 638 aaKnown RBP13.4□□□□□ -0.26
Rnf40-201ENSMUST00000033088 Sart1Q9Z315 806 aaKnown RBP13.39□□□□□ -0.27
Rnf40-201ENSMUST00000033088 Fmn2Q9JL04 1578 aa13.39□□□□□ -0.27
Rnf40-201ENSMUST00000033088 AI481877A2ALV5 1481 aa13.39□□□□□ -0.27
Rnf40-201ENSMUST00000033088 Kiaa0754Q69ZZ9 979 aa13.39□□□□□ -0.27
Rnf40-201ENSMUST00000033088 Stk26Q99JT2 416 aa13.39□□□□□ -0.27
Rnf40-201ENSMUST00000033088 DmtnQ9WV69 405 aa13.39□□□□□ -0.27
Rnf40-201ENSMUST00000033088 Gm32742A0A1B0GT42 1604 aa13.39□□□□□ -0.27
Rnf40-201ENSMUST00000033088 Trappc8E9PWG2 1437 aa13.38□□□□□ -0.27
Rnf40-201ENSMUST00000033088 Dapk1Q80YE7 1442 aa13.38□□□□□ -0.27
Rnf40-201ENSMUST00000033088 Tmf1B9EKI3 1091 aa13.38□□□□□ -0.27
Rnf40-201ENSMUST00000033088 Ccdc30Q8BVF4 654 aa13.38□□□□□ -0.27
Rnf40-201ENSMUST00000033088 Tomm22Q9CPQ3 142 aa13.38□□□□□ -0.27
Rnf40-201ENSMUST00000033088 Adgrl2Q8JZZ7 1487 aa13.37□□□□□ -0.27
Rnf40-201ENSMUST00000033088 CgnP59242 1191 aa13.37□□□□□ -0.27
Rnf40-201ENSMUST00000033088 Ssh1Q76I79 1042 aa13.37□□□□□ -0.27
Rnf40-201ENSMUST00000033088 Pdcd11Q6NS46 1862 aaKnown RBP13.37□□□□□ -0.27
Rnf40-201ENSMUST00000033088 AlkP97793 1621 aa13.37□□□□□ -0.27
Rnf40-201ENSMUST00000033088 Cep170Q6A065 1588 aa13.37□□□□□ -0.27
Rnf40-201ENSMUST00000033088 NgefQ8CHT1 710 aa13.36□□□□□ -0.27
Rnf40-201ENSMUST00000033088 Setbp1Q9Z180 1582 aa13.36□□□□□ -0.27
Rnf40-201ENSMUST00000033088 Gtf2a1Q99PM3 378 aa13.36□□□□□ -0.27
Rnf40-201ENSMUST00000033088 Znf608Q56A10 1511 aa13.36□□□□□ -0.27
Rnf40-201ENSMUST00000033088 Stag3O70576 1240 aa13.36□□□□□ -0.27
Rnf40-201ENSMUST00000033088 Clstn2Q9ER65 966 aa13.36□□□□□ -0.27
Rnf40-201ENSMUST00000033088 Lrrc9Q8CDN9 1456 aa13.35□□□□□ -0.27
Rnf40-201ENSMUST00000033088 Nup155Q99P88 1391 aaKnown RBP13.35□□□□□ -0.27
Rnf40-201ENSMUST00000033088 Lamc1P02468 1607 aaKnown RBP13.35□□□□□ -0.27
Rnf40-201ENSMUST00000033088 Ddrgk1Q80WW9 315 aa13.35□□□□□ -0.27
Rnf40-201ENSMUST00000033088 Fam13bQ8K2H3 851 aa13.35□□□□□ -0.27
Rnf40-201ENSMUST00000033088 Chrna2Q91X60 512 aa13.35□□□□□ -0.27
Rnf40-201ENSMUST00000033088 Arid3cA6PWV5 409 aa13.34□□□□□ -0.27
Rnf40-201ENSMUST00000033088 KnstrnQ9D9Z1 312 aaKnown RBP13.34□□□□□ -0.27
Rnf40-201ENSMUST00000033088 Neurl4Q5NCX5 1563 aa13.34□□□□□ -0.27
Rnf40-201ENSMUST00000033088 Srcin1Q9QWI6 1250 aa13.34□□□□□ -0.27
Rnf40-201ENSMUST00000033088 Mast1Q9R1L5 1570 aa13.34□□□□□ -0.27
Rnf40-201ENSMUST00000033088 Abcc3B2RX12 1523 aa13.34□□□□□ -0.27
Rnf40-201ENSMUST00000033088 CrebrfQ8CDG5 640 aaKnown RBP13.33□□□□□ -0.27
Rnf40-201ENSMUST00000033088 Stard8Q8K031 1019 aa13.33□□□□□ -0.27
Rnf40-201ENSMUST00000033088 Polr3gQ6NXY9 223 aa13.33□□□□□ -0.28
Rnf40-201ENSMUST00000033088 Rrp9Q91WM3 475 aaKnown RBP13.33□□□□□ -0.28
Rnf40-201ENSMUST00000033088 Rock1P70335 1354 aa13.33□□□□□ -0.28
Rnf40-201ENSMUST00000033088 Prdm16A2A935 1275 aa13.33□□□□□ -0.28
Rnf40-201ENSMUST00000033088 Hecw1Q8K4P8 1604 aa13.32□□□□□ -0.28
Rnf40-201ENSMUST00000033088 Kif16bB1AVY7 1312 aa13.32□□□□□ -0.28
Rnf40-201ENSMUST00000033088 Ccdc60Q8C4J0 545 aa13.32□□□□□ -0.28
Rnf40-201ENSMUST00000033088 Cers3Q1A3B0 383 aa13.31□□□□□ -0.28
Rnf40-201ENSMUST00000033088 Rock2P70336 1388 aa13.31□□□□□ -0.28
Rnf40-201ENSMUST00000033088 Babam1Q3UI43 333 aa13.31□□□□□ -0.28
Rnf40-201ENSMUST00000033088 Fan1Q69ZT1 1020 aa13.31□□□□□ -0.28
Rnf40-201ENSMUST00000033088 Ttll5Q8CHB8 1328 aa13.31□□□□□ -0.28
Rnf40-201ENSMUST00000033088 Naip5Q9R016 1403 aa13.31□□□□□ -0.28
Retrieved 100 of 22,080 RNA–protein pairs in 72.2 ms