RNA–Protein interactions for RNA: YKR098C

UBP11, Transcript of Ubiquitin-specific protease, yeastyeast

Gene UBP11, Length 2,154 nt, Biotype protein coding.

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RNA Protein Prediction (catRAPID) Interaction (RIP-Chip)
Gene Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score Detected Interaction
UBP11YKR098C YOL160WQ08321 113 aa1.54□□□□□ -2.16
UBP11YKR098C CLP1Q08685 445 aaPredicted RBP1.54□□□□□ -2.16
UBP11YKR098C PSF1Q12488 208 aa1.54□□□□□ -2.16
UBP11YKR098C REP2P03872 296 aa1.54□□□□□ -2.16
UBP11YKR098C RPL25P04456 142 aaKnown RBP1.54□□□□□ -2.16
UBP11YKR098C MRS1P07266 363 aa1.54□□□□□ -2.16
UBP11YKR098C SCM4P32564 187 aa1.54□□□□□ -2.16
UBP11YKR098C PTM1P32857 523 aa1.54□□□□□ -2.16
UBP11YKR098C EGD2P38879 174 aaKnown RBP1.54□□□□□ -2.16
UBP11YKR098C RMD6P39975 231 aa1.54□□□□□ -2.16
UBP11YKR098C YJR146WP47174 117 aa1.54□□□□□ -2.16
UBP11YKR098C AKR2Q12013 749 aa1.54□□□□□ -2.16
UBP11YKR098C RAD51P25454 400 aa1.53□□□□□ -2.16
UBP11YKR098C ATG22P25568 528 aa1.53□□□□□ -2.16
UBP11YKR098C SEC17P32602 292 aa1.53□□□□□ -2.16
UBP11YKR098C POP4P38336 279 aa1.53□□□□□ -2.16
UBP11YKR098C COG5P53951 403 aa1.53□□□□□ -2.16
UBP11YKR098C ARO80Q04052 950 aa1.53□□□□□ -2.16
UBP11YKR098C TRM12Q04235 462 aa1.53□□□□□ -2.16
UBP11YKR098C GIM5Q04493 163 aa1.53□□□□□ -2.16
UBP11YKR098C MDM32Q12171 622 aa1.53□□□□□ -2.16
UBP11YKR098C YPR096CO13587 100 aa1.52□□□□□ -2.17
UBP11YKR098C YLR156WP0CE96 114 aa1.52□□□□□ -2.17
UBP11YKR098C YLR159WP0CE97 114 aa1.52□□□□□ -2.17
UBP11YKR098C YLR161WP0CE98 114 aa1.52□□□□□ -2.17
UBP11YKR098C RPL35AP0CX84 120 aaKnown RBP1.52□□□□□ -2.17
UBP11YKR098C RPL35BP0CX85 120 aaKnown RBP1.52□□□□□ -2.17
UBP11YKR098C SCO1P23833 295 aa1.52□□□□□ -2.17
UBP11YKR098C RME1P32338 300 aaKnown RBP1.52□□□□□ -2.17
UBP11YKR098C VMA11P32842 164 aa1.52□□□□□ -2.17
UBP11YKR098C UTP30P36144 274 aaKnown RBP1.52□□□□□ -2.17
UBP11YKR098C CDC8P00572 216 aa1.52□□□□□ -2.17
UBP11YKR098C KSS1P14681 368 aa1.52□□□□□ -2.17
UBP11YKR098C MAG1P22134 296 aaKnown RBP1.52□□□□□ -2.17
UBP11YKR098C CAF4P36130 643 aa1.52□□□□□ -2.17
UBP11YKR098C YHL026CP38740 315 aa1.52□□□□□ -2.17
UBP11YKR098C POG1P40473 351 aa1.52□□□□□ -2.17
UBP11YKR098C MRPL49P40858 161 aaPredicted RBP1.52□□□□□ -2.17
UBP11YKR098C SNX4P47057 423 aa1.52□□□□□ -2.17
UBP11YKR098C SNO1Q03144 224 aa1.52□□□□□ -2.17
UBP11YKR098C YDR249CQ03787 373 aa1.52□□□□□ -2.17
UBP11YKR098C NOC4Q06512 552 aaPredicted RBP1.52□□□□□ -2.17
UBP11YKR098C ARR2Q06597 130 aa1.52□□□□□ -2.17
UBP11YKR098C RDS3Q06835 107 aaPredicted RBP1.52□□□□□ -2.17
UBP11YKR098C HRT1Q08273 121 aa1.52□□□□□ -2.17
UBP11YKR098C VPS68Q12016 184 aa1.52□□□□□ -2.17
UBP11YKR098C YPL162CQ12042 273 aa1.52□□□□□ -2.17
UBP11YKR098C MCP1Q12106 302 aa1.52□□□□□ -2.17
UBP11YKR098C YFR032C-BQ8TGU2 87 aa1.52□□□□□ -2.17
UBP11YKR098C PUT1P09368 476 aa1.51□□□□□ -2.17
UBP11YKR098C ECM4P36156 370 aa1.51□□□□□ -2.17
UBP11YKR098C SHG1P38337 142 aa1.51□□□□□ -2.17
UBP11YKR098C HMF1P40037 129 aaKnown RBP1.51□□□□□ -2.17
UBP11YKR098C DSK2P48510 373 aa1.51□□□□□ -2.17
UBP11YKR098C RTC4P53850 401 aa1.51□□□□□ -2.17
UBP11YKR098C NRK1P53915 240 aa1.51□□□□□ -2.17
UBP11YKR098C SLM2P53955 656 aa1.51□□□□□ -2.17
UBP11YKR098C IKI3Q06706 1349 aaKnown RBP1.51□□□□□ -2.17
UBP11YKR098C YIL177CP40434 1758 aa1.51□□□□□ -2.17
UBP11YKR098C YJL225CP40889 1758 aa1.51□□□□□ -2.17
UBP11YKR098C SNF6P18888 332 aa1.51□□□□□ -2.17
UBP11YKR098C CNB1P25296 175 aa1.51□□□□□ -2.17
UBP11YKR098C AST2P39945 430 aaKnown RBP1.51□□□□□ -2.17
UBP11YKR098C PRM10P42946 383 aa1.51□□□□□ -2.17
UBP11YKR098C MNN5P46982 586 aa1.51□□□□□ -2.17
UBP11YKR098C UBC12P52491 188 aa1.51□□□□□ -2.17
UBP11YKR098C COS6P53344 381 aa1.51□□□□□ -2.17
UBP11YKR098C YIP3P53633 176 aa1.51□□□□□ -2.17
UBP11YKR098C YNL184CP53876 108 aa1.51□□□□□ -2.17
UBP11YKR098C SMD2Q06217 110 aaKnown RBP1.51□□□□□ -2.17
UBP11YKR098C SUE1Q06524 206 aa1.51□□□□□ -2.17
UBP11YKR098C YET3Q07451 203 aa1.51□□□□□ -2.17
UBP11YKR098C CMC2Q3E7A4 109 aa1.51□□□□□ -2.17
UBP11YKR098C IGO2Q9P305 131 aa1.51□□□□□ -2.17
UBP11YKR098C MSW1P04803 379 aa1.5□□□□□ -2.17
UBP11YKR098C SIR2P06700 562 aa1.5□□□□□ -2.17
UBP11YKR098C FBA1P14540 359 aaKnown RBP1.5□□□□□ -2.17
UBP11YKR098C SKG1P36169 355 aa1.5□□□□□ -2.17
UBP11YKR098C MED6P38782 295 aa1.5□□□□□ -2.17
UBP11YKR098C PDS1P40316 373 aaPredicted RBP1.5□□□□□ -2.17
UBP11YKR098C SPG3Q04398 127 aaPredicted RBP1.5□□□□□ -2.17
UBP11YKR098C GRX8Q05926 109 aa1.5□□□□□ -2.17
UBP11YKR098C YOL024WQ08172 172 aa1.5□□□□□ -2.17
UBP11YKR098C GCY1P14065 312 aaKnown RBP RIP-Chip data1.49□□□□□ -2.17not detected
UBP11YKR098C RPB3P16370 318 aaKnown RBP1.49□□□□□ -2.17
UBP11YKR098C TAH1P25638 111 aaPredicted RBP1.49□□□□□ -2.17
UBP11YKR098C CLB6P32943 380 aa1.49□□□□□ -2.17
UBP11YKR098C YKR041WP36134 250 aa1.49□□□□□ -2.17
UBP11YKR098C AIF1P52923 378 aa1.49□□□□□ -2.17
UBP11YKR098C SWP1Q02795 286 aa1.49□□□□□ -2.17
UBP11YKR098C FUS2Q05670 677 aa1.49□□□□□ -2.17
UBP11YKR098C MHT1Q12525 324 aa1.49□□□□□ -2.17
UBP11YKR098C URA5P13298 226 aaKnown RBP1.49□□□□□ -2.17
UBP11YKR098C BET1P22804 142 aa1.49□□□□□ -2.17
UBP11YKR098C TRR1P29509 319 aaKnown RBP1.49□□□□□ -2.17
UBP11YKR098C ARC19P33204 171 aaKnown RBP1.49□□□□□ -2.17
UBP11YKR098C ARP3P47117 449 aaKnown RBP1.49□□□□□ -2.17
UBP11YKR098C MIX17Q03667 156 aa1.49□□□□□ -2.17
UBP11YKR098C NEJ1Q06148 342 aa1.49□□□□□ -2.17
UBP11YKR098C TSC3Q3E790 80 aa1.49□□□□□ -2.17
Retrieved 100 of 5,963 RNA–protein pairs in 26.8 ms