RNA–Protein interactions for RNA: YDR460W

TFB3, Transcript of Subunit of TFIIH and nucleotide excision repair factor 3 complexes, yeast

Gene TFB3, Length 966 nt, Biotype protein coding.

RNA		Protein				Prediction (catRAPID)		Interaction (RIP-Chip)
Gene	Ensembl Transcript ID	Gene	UniProt Accession	Length	Protein Status	Prediction Score	Prediction z-Score	Detected Interaction
TFB3	YDR460W	RPL35B	P0CX85	120 aa	Known RBP	4.1	□□□□□ -1.75
TFB3	YDR460W	ASP3-1	P0CZ17	362 aa		4.1	□□□□□ -1.75
TFB3	YDR460W	ART10	P18634	518 aa	Known RBP	4.1	□□□□□ -1.75
TFB3	YDR460W	IDH2	P28241	369 aa	Known RBP	4.1	□□□□□ -1.75
TFB3	YDR460W	SDH3	P33421	198 aa		4.1	□□□□□ -1.75
TFB3	YDR460W	PAU16	P35994	123 aa		4.1	□□□□□ -1.75
TFB3	YDR460W	CBP4	P37267	147 aa		4.1	□□□□□ -1.75
TFB3	YDR460W	PAU24	P38155	120 aa		4.1	□□□□□ -1.75
TFB3	YDR460W	MRP21	P38175	177 aa		4.1	□□□□□ -1.75
TFB3	YDR460W	TVP23	P38962	199 aa		4.1	□□□□□ -1.75
TFB3	YDR460W	TIF34	P40217	347 aa	Known RBP	4.1	□□□□□ -1.75
TFB3	YDR460W	LRO1	P40345	661 aa		4.1	□□□□□ -1.75
TFB3	YDR460W	SEC24	P40482	926 aa	Known RBP	4.1	□□□□□ -1.75
TFB3	YDR460W	RPA43	P46669	326 aa		4.1	□□□□□ -1.75
TFB3	YDR460W	HIT1	P46973	164 aa		4.1	□□□□□ -1.75
TFB3	YDR460W	YJR120W	P47157	116 aa		4.1	□□□□□ -1.75
TFB3	YDR460W	MTM1	P53320	366 aa		4.1	□□□□□ -1.75
TFB3	YDR460W	YNL092W	P53934	400 aa		4.1	□□□□□ -1.75
TFB3	YDR460W	EFM6	P53970	246 aa		4.1	□□□□□ -1.75
TFB3	YDR460W	OAZ1	Q02803	292 aa		4.1	□□□□□ -1.75
TFB3	YDR460W	YHM2	Q04013	314 aa		4.1	□□□□□ -1.75
TFB3	YDR460W	YMR321C	Q04898	105 aa		4.1	□□□□□ -1.75
TFB3	YDR460W	GRX8	Q05926	109 aa		4.1	□□□□□ -1.75
TFB3	YDR460W	TAZ1	Q06510	381 aa		4.1	□□□□□ -1.75
TFB3	YDR460W	IZH3	Q07959	543 aa		4.1	□□□□□ -1.75
TFB3	YDR460W	YOR378W	Q08902	515 aa		4.1	□□□□□ -1.75
TFB3	YDR460W	MCP1	Q12106	302 aa		4.1	□□□□□ -1.75
TFB3	YDR460W	UBX3	Q12229	455 aa		4.1	□□□□□ -1.75
TFB3	YDR460W	IZH2	Q12442	317 aa		4.1	□□□□□ -1.75
TFB3	YDR460W	YLR361C-A	Q3E795	98 aa		4.1	□□□□□ -1.75
TFB3	YDR460W	YBR121C-A	P0C5L4	52 aa		4.09	□□□□□ -1.75
TFB3	YDR460W	ERG4	P25340	473 aa		4.09	□□□□□ -1.75
TFB3	YDR460W	RER1	P25560	188 aa		4.09	□□□□□ -1.75
TFB3	YDR460W	LRE1	P25579	583 aa	Known RBP	4.09	□□□□□ -1.75
TFB3	YDR460W	YIH1	P25637	258 aa		4.09	□□□□□ -1.75
TFB3	YDR460W	ATS1	P31386	333 aa		4.09	□□□□□ -1.75
TFB3	YDR460W	PAU2	P32612	120 aa		4.09	□□□□□ -1.75
TFB3	YDR460W	ALK2	P32789	676 aa	Predicted RBP	4.09	□□□□□ -1.75
TFB3	YDR460W	PEX2	P32800	271 aa		4.09	□□□□□ -1.75
TFB3	YDR460W	NTF2	P33331	125 aa	Known RBP	4.09	□□□□□ -1.75
TFB3	YDR460W	AGP2	P38090	596 aa		4.09	□□□□□ -1.75
TFB3	YDR460W	LSM2	P38203	95 aa	Known RBP	4.09	□□□□□ -1.75
TFB3	YDR460W	YBR053C	P38235	358 aa		4.09	□□□□□ -1.75
TFB3	YDR460W	YBR071W	P38243	211 aa		4.09	□□□□□ -1.75
TFB3	YDR460W	PHO88	P38264	188 aa	Predicted RBP	4.09	□□□□□ -1.75
TFB3	YDR460W	FYV4	P38783	130 aa	Predicted RBP	4.09	□□□□□ -1.75
TFB3	YDR460W	YER085C	P40058	173 aa		4.09	□□□□□ -1.75
TFB3	YDR460W	DLS1	P40366	167 aa		4.09	□□□□□ -1.75
TFB3	YDR460W	YIL152W	P40455	235 aa		4.09	□□□□□ -1.75
TFB3	YDR460W	SMK1	P41808	388 aa		4.09	□□□□□ -1.75
TFB3	YDR460W	SMD3	P43321	101 aa	Known RBP	4.09	□□□□□ -1.75
TFB3	YDR460W	OTU1	P43558	301 aa		4.09	□□□□□ -1.75
TFB3	YDR460W	YFL012W	P43580	148 aa		4.09	□□□□□ -1.75
TFB3	YDR460W	TTI2	P47168	421 aa		4.09	□□□□□ -1.75
TFB3	YDR460W	TAM41	P53230	385 aa		4.09	□□□□□ -1.75
TFB3	YDR460W	TGL2	P54857	326 aa		4.09	□□□□□ -1.75
TFB3	YDR460W	GOT1	Q03554	138 aa		4.09	□□□□□ -1.75
TFB3	YDR460W	UPS3	Q04006	179 aa		4.09	□□□□□ -1.75
TFB3	YDR460W	YDR415C	Q04033	374 aa	Predicted RBP	4.09	□□□□□ -1.75
TFB3	YDR460W	TRI1	Q05024	226 aa		4.09	□□□□□ -1.75
TFB3	YDR460W	NAT5	Q08689	176 aa		4.09	□□□□□ -1.75
TFB3	YDR460W	PRR2	Q12310	699 aa		4.09	□□□□□ -1.75
TFB3	YDR460W	YDR262W	Q12331	272 aa		4.09	□□□□□ -1.75
TFB3	YDR460W	MES1	P00958	751 aa	Known RBP	4.08	□□□□□ -1.76
TFB3	YDR460W	YPT1	P01123	206 aa	Known RBP	4.08	□□□□□ -1.76
TFB3	YDR460W	RPL7A	P05737	244 aa	Known RBP	4.08	□□□□□ -1.76
TFB3	YDR460W	RPS21A	P0C0V8	87 aa	Known RBP	4.08	□□□□□ -1.76
TFB3	YDR460W	CBS1	P14066	229 aa		4.08	□□□□□ -1.76
TFB3	YDR460W	IRA2	P19158	3079 aa		4.08	□□□□□ -1.76
TFB3	YDR460W	NUP1	P20676	1076 aa		4.08	□□□□□ -1.76
TFB3	YDR460W	PCL1	P24867	279 aa		4.08	□□□□□ -1.76
TFB3	YDR460W	TRR1	P29509	319 aa	Known RBP	4.08	□□□□□ -1.76
TFB3	YDR460W	MF(ALPHA)2	P32435	120 aa		4.08	□□□□□ -1.76
TFB3	YDR460W	HXT4	P32467	576 aa		4.08	□□□□□ -1.76
TFB3	YDR460W	MTH1	P35198	433 aa		4.08	□□□□□ -1.76
TFB3	YDR460W	YKL071W	P36086	256 aa		4.08	□□□□□ -1.76
TFB3	YDR460W	TCD2	P36101	447 aa	Known RBP	4.08	□□□□□ -1.76
TFB3	YDR460W	SHE1	P38200	338 aa		4.08	□□□□□ -1.76
TFB3	YDR460W	URA8	P38627	578 aa	Predicted RBP	4.08	□□□□□ -1.76
TFB3	YDR460W	RPL14B	P38754	138 aa	Known RBP	4.08	□□□□□ -1.76
TFB3	YDR460W	GPP2	P40106	250 aa	Known RBP	4.08	□□□□□ -1.76
TFB3	YDR460W	SCD6	P45978	349 aa	Known RBP RIP-Chip data	4.08	□□□□□ -1.76	not detected
TFB3	YDR460W	UBX6	P47049	396 aa		4.08	□□□□□ -1.76
TFB3	YDR460W	VPS73	P53142	486 aa	Known RBP	4.08	□□□□□ -1.76
TFB3	YDR460W	COX18	P53239	316 aa		4.08	□□□□□ -1.76
TFB3	YDR460W	YGR066C	P53242	292 aa		4.08	□□□□□ -1.76
TFB3	YDR460W	YGR079W	P53249	370 aa		4.08	□□□□□ -1.76
TFB3	YDR460W	ATG4	P53867	494 aa		4.08	□□□□□ -1.76
TFB3	YDR460W	YNL140C	P53910	189 aa		4.08	□□□□□ -1.76
TFB3	YDR460W	YMR210W	Q03649	449 aa		4.08	□□□□□ -1.76
TFB3	YDR460W	YOL024W	Q08172	172 aa		4.08	□□□□□ -1.76
TFB3	YDR460W	PAR32	Q12515	295 aa	Known RBP	4.08	□□□□□ -1.76
TFB3	YDR460W	YPL247C	Q12523	523 aa		4.08	□□□□□ -1.76
TFB3	YDR460W	YLR146W-A	Q2V2P1	62 aa		4.08	□□□□□ -1.76
TFB3	YDR460W	YCR075W-A	Q3E830	75 aa		4.08	□□□□□ -1.76
TFB3	YDR460W	CHO1	P08456	276 aa		4.07	□□□□□ -1.76
TFB3	YDR460W	RPS28B	P0C0X0	67 aa	Known RBP	4.07	□□□□□ -1.76
TFB3	YDR460W	SAG1	P20840	650 aa		4.07	□□□□□ -1.76
TFB3	YDR460W	TKL1	P23254	680 aa	Known RBP	4.07	□□□□□ -1.76
TFB3	YDR460W	IMG2	P25642	146 aa	Predicted RBP	4.07	□□□□□ -1.76

Retrieved 100 of 5,963 RNA–protein pairs in 24.7 ms