RNA–Protein interactions for RNA: YDR240C

SNU56, Transcript of Component of U1 snRNP required for mRNA splicing via spliceosome, yeastyeast

Gene SNU56, Length 1,479 nt, Biotype protein coding.

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RNA Protein Prediction (catRAPID) Interaction (RIP-Chip)
Gene Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score Detected Interaction
SNU56YDR240C NSP1P14907 823 aaKnown RBP0.78□□□□□ -2.28
SNU56YDR240C MRPL17P36528 281 aa0.78□□□□□ -2.28
SNU56YDR240C YAE1P47118 141 aaPredicted RBP0.78□□□□□ -2.28
SNU56YDR240C AIM36Q03798 255 aa0.78□□□□□ -2.28
SNU56YDR240C PAM18Q07914 168 aa0.78□□□□□ -2.28
SNU56YDR240C GPM2Q12008 311 aa0.78□□□□□ -2.28
SNU56YDR240C ATG40Q99325 256 aa0.78□□□□□ -2.28
SNU56YDR240C CUE1P38428 203 aa0.77□□□□□ -2.29
SNU56YDR240C EDC3P39998 551 aaKnown RBP0.77□□□□□ -2.29
SNU56YDR240C YOL107WQ12239 342 aa0.77□□□□□ -2.29
SNU56YDR240C TUS1Q06412 1307 aa0.77□□□□□ -2.29
SNU56YDR240C SPT3P06844 337 aa0.76□□□□□ -2.29
SNU56YDR240C MRPL25P23369 157 aa0.76□□□□□ -2.29
SNU56YDR240C SRY1P36007 326 aa0.76□□□□□ -2.29
SNU56YDR240C SIP3P38717 1229 aa0.76□□□□□ -2.29
SNU56YDR240C SOK1P40317 901 aa0.76□□□□□ -2.29
SNU56YDR240C FLX1P40464 311 aa0.76□□□□□ -2.29
SNU56YDR240C NSA1P53136 463 aaPredicted RBP0.76□□□□□ -2.29
SNU56YDR240C PRM8P53174 237 aa0.76□□□□□ -2.29
SNU56YDR240C OPY1P38271 328 aa0.75□□□□□ -2.29
SNU56YDR240C GVP36P40531 326 aaKnown RBP0.75□□□□□ -2.29
SNU56YDR240C BNA6P43619 295 aa0.75□□□□□ -2.29
SNU56YDR240C TRM9P49957 279 aa0.75□□□□□ -2.29
SNU56YDR240C NUP84P52891 726 aa0.75□□□□□ -2.29
SNU56YDR240C ARO8P53090 500 aaKnown RBP0.75□□□□□ -2.29
SNU56YDR240C RCE1Q03530 315 aa0.75□□□□□ -2.29
SNU56YDR240C ATG31Q12421 196 aa0.75□□□□□ -2.29
SNU56YDR240C TIM9O74700 87 aa0.73□□□□□ -2.29
SNU56YDR240C RPO26P20435 155 aa0.73□□□□□ -2.29
SNU56YDR240C CDC10P25342 322 aaKnown RBP0.73□□□□□ -2.29
SNU56YDR240C RIB7P33312 244 aa0.73□□□□□ -2.29
SNU56YDR240C YBR285WP38354 144 aa0.73□□□□□ -2.29
SNU56YDR240C YHL042WP38729 150 aa0.73□□□□□ -2.29
SNU56YDR240C YFL065CP43539 102 aa0.73□□□□□ -2.29
SNU56YDR240C CWC27Q02770 301 aa0.73□□□□□ -2.29
SNU56YDR240C YLR173WQ06247 608 aa0.73□□□□□ -2.29
SNU56YDR240C YLR236CA0A023PZG4 107 aa0.73□□□□□ -2.29
SNU56YDR240C RPT5P33297 434 aaKnown RBP0.73□□□□□ -2.29
SNU56YDR240C NTF2P33331 125 aaKnown RBP0.73□□□□□ -2.29
SNU56YDR240C SKG1P36169 355 aa0.73□□□□□ -2.29
SNU56YDR240C SRL4Q03085 281 aa0.73□□□□□ -2.29
SNU56YDR240C SEC11P15367 167 aa0.72□□□□□ -2.29
SNU56YDR240C EAF6P47128 113 aa0.72□□□□□ -2.29
SNU56YDR240C CUE4Q04201 117 aaPredicted RBP0.72□□□□□ -2.29
SNU56YDR240C CDC123Q05791 360 aa0.72□□□□□ -2.29
SNU56YDR240C YHR007C-AQ07074 71 aa0.72□□□□□ -2.29
SNU56YDR240C MED4Q12343 284 aa0.72□□□□□ -2.29
SNU56YDR240C RRP36Q12481 300 aaPredicted RBP0.72□□□□□ -2.29
SNU56YDR240C YIL177CP40434 1758 aa0.71□□□□□ -2.3
SNU56YDR240C YJL225CP40889 1758 aa0.71□□□□□ -2.3
SNU56YDR240C DRS2P39524 1355 aa0.71□□□□□ -2.3
SNU56YDR240C SEC17P32602 292 aa0.71□□□□□ -2.3
SNU56YDR240C YNL247WP53852 767 aaKnown RBP0.71□□□□□ -2.3
SNU56YDR240C MCP1Q12106 302 aa0.71□□□□□ -2.3
SNU56YDR240C SIR2P06700 562 aa0.7□□□□□ -2.3
SNU56YDR240C URA6P15700 204 aa0.7□□□□□ -2.3
SNU56YDR240C PRE6P40303 254 aaKnown RBP0.7□□□□□ -2.3
SNU56YDR240C FAR7P43592 221 aa0.7□□□□□ -2.3
SNU56YDR240C YNL134CP53912 376 aaKnown RBP0.7□□□□□ -2.3
SNU56YDR240C TDA8Q6B2U8 126 aa0.7□□□□□ -2.3
SNU56YDR240C PRP8P33334 2413 aaKnown RBP0.7□□□□□ -2.3
SNU56YDR240C YHR212W-AP0CX91 67 aa0.69□□□□□ -2.3
SNU56YDR240C TCA17P32613 152 aa0.69□□□□□ -2.3
SNU56YDR240C YER034WP40022 185 aaKnown RBP0.69□□□□□ -2.3
SNU56YDR240C FMC1P40491 155 aa0.69□□□□□ -2.3
SNU56YDR240C LIA1P47120 325 aaKnown RBP0.69□□□□□ -2.3
SNU56YDR240C RRT8Q08219 342 aa0.69□□□□□ -2.3
SNU56YDR240C DBF2P22204 572 aa0.68□□□□□ -2.3
SNU56YDR240C YUH1P35127 236 aa0.68□□□□□ -2.3
SNU56YDR240C RPC17P47076 161 aa0.68□□□□□ -2.3
SNU56YDR240C FYV6P53913 173 aa0.68□□□□□ -2.3
SNU56YDR240C YLR283WQ05867 314 aa0.68□□□□□ -2.3
SNU56YDR240C RAD28Q12021 506 aa0.68□□□□□ -2.3
SNU56YDR240C URA5P13298 226 aaKnown RBP0.67□□□□□ -2.3
SNU56YDR240C APS1P35181 156 aa0.67□□□□□ -2.3
SNU56YDR240C LDB7P38210 180 aa0.67□□□□□ -2.3
SNU56YDR240C VMA22P38784 181 aa0.67□□□□□ -2.3
SNU56YDR240C BRR6P53062 197 aa0.67□□□□□ -2.3
SNU56YDR240C SSO1P32867 290 aa0.67□□□□□ -2.3
SNU56YDR240C UTP30P36144 274 aaKnown RBP0.67□□□□□ -2.3
SNU56YDR240C COX15P40086 486 aa0.67□□□□□ -2.3
SNU56YDR240C MIC26P50087 233 aa0.67□□□□□ -2.3
SNU56YDR240C CDC28P00546 298 aaKnown RBP0.66□□□□□ -2.3
SNU56YDR240C HYR1P40581 163 aaKnown RBP0.66□□□□□ -2.3
SNU56YDR240C YDR249CQ03787 373 aa0.66□□□□□ -2.3
SNU56YDR240C LCL2Q08045 131 aa0.66□□□□□ -2.3
SNU56YDR240C MDM35O60200 86 aa0.65□□□□□ -2.31
SNU56YDR240C BET1P22804 142 aa0.65□□□□□ -2.31
SNU56YDR240C BXI1P48558 297 aa0.65□□□□□ -2.31
SNU56YDR240C YOL160WQ08321 113 aa0.65□□□□□ -2.31
SNU56YDR240C KSS1P14681 368 aa0.64□□□□□ -2.31
SNU56YDR240C IDH1P28834 360 aaKnown RBP RIP-Chip data0.64□□□□□ -2.31not detected
SNU56YDR240C ECM4P36156 370 aa0.63□□□□□ -2.31
SNU56YDR240C YFH7P43591 353 aa0.63□□□□□ -2.31
SNU56YDR240C YDR274CP87283 123 aa0.63□□□□□ -2.31
SNU56YDR240C PET117Q02771 107 aa0.63□□□□□ -2.31
SNU56YDR240C YMR252CQ04814 134 aa0.63□□□□□ -2.31
SNU56YDR240C CDC36P06100 191 aaPredicted RBP0.62□□□□□ -2.31
SNU56YDR240C AST2P39945 430 aaKnown RBP0.62□□□□□ -2.31
SNU56YDR240C RMD6P39975 231 aa0.62□□□□□ -2.31
Retrieved 100 of 5,963 RNA–protein pairs in 65.5 ms