RNA–Protein interactions for RNA: YKR036C

CAF4, Transcript of WD40 repeat-containing protein associated with the CCR4-NOT complex, yeastyeast

Gene CAF4, Length 1,932 nt, Biotype protein coding.

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RNA Protein Prediction (catRAPID) Interaction (RIP-Chip)
Gene Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score Detected Interaction
CAF4YKR036C ATG27P46989 271 aa4.34□□□□□ -1.71
CAF4YKR036C EMC4P53073 190 aa4.34□□□□□ -1.71
CAF4YKR036C YGR017WP53210 297 aa4.34□□□□□ -1.71
CAF4YKR036C YGR250CP53316 781 aaKnown RBP4.34□□□□□ -1.71
CAF4YKR036C SUN4P53616 420 aa4.34□□□□□ -1.71
CAF4YKR036C YNL140CP53910 189 aa4.34□□□□□ -1.71
CAF4YKR036C YML096WQ04489 525 aa4.34□□□□□ -1.71
CAF4YKR036C ATG10Q07879 167 aa4.34□□□□□ -1.71
CAF4YKR036C MSW1P04803 379 aa4.34□□□□□ -1.71
CAF4YKR036C HAP4P14064 554 aa4.34□□□□□ -1.71
CAF4YKR036C AGP1P25376 633 aa4.34□□□□□ -1.71
CAF4YKR036C YCR100CP25606 316 aa4.34□□□□□ -1.71
CAF4YKR036C DCG1P32460 244 aa4.34□□□□□ -1.71
CAF4YKR036C PMU1P36069 295 aa4.34□□□□□ -1.71
CAF4YKR036C WSS1P38838 269 aa4.34□□□□□ -1.71
CAF4YKR036C YEL068CP39977 110 aa4.34□□□□□ -1.71
CAF4YKR036C BAT2P47176 376 aaKnown RBP4.34□□□□□ -1.71
CAF4YKR036C ASK10P48361 1146 aa4.34□□□□□ -1.71
CAF4YKR036C SNO2P53823 222 aa4.34□□□□□ -1.71
CAF4YKR036C NRG1Q03125 231 aa4.34□□□□□ -1.71
CAF4YKR036C YMR178WQ03219 274 aaKnown RBP4.34□□□□□ -1.71
CAF4YKR036C RPC11Q04307 110 aaPredicted RBP4.34□□□□□ -1.71
CAF4YKR036C YPR114WQ06107 315 aa4.34□□□□□ -1.71
CAF4YKR036C SYM1Q06563 197 aa4.34□□□□□ -1.71
CAF4YKR036C IZH2Q12442 317 aa4.34□□□□□ -1.71
CAF4YKR036C TDH3P00359 332 aaKnown RBP RIP-Chip data4.33□□□□□ -1.72not detected
CAF4YKR036C CHO1P08456 276 aa4.33□□□□□ -1.72
CAF4YKR036C RPL1AP0CX43 217 aaKnown RBP4.33□□□□□ -1.72
CAF4YKR036C RPL1BP0CX44 217 aaKnown RBP4.33□□□□□ -1.72
CAF4YKR036C NHP6AP11632 93 aaKnown RBP4.33□□□□□ -1.72
CAF4YKR036C SCH9P11792 824 aaKnown RBP4.33□□□□□ -1.72
CAF4YKR036C ERG4P25340 473 aa4.33□□□□□ -1.72
CAF4YKR036C MGM101P32787 269 aaKnown RBP4.33□□□□□ -1.72
CAF4YKR036C PRY2P36110 329 aa4.33□□□□□ -1.72
CAF4YKR036C PAC1P39946 494 aaKnown RBP4.33□□□□□ -1.72
CAF4YKR036C YEL073CP39974 107 aa4.33□□□□□ -1.72
CAF4YKR036C CDC40P40968 455 aaPredicted RBP4.33□□□□□ -1.72
CAF4YKR036C TRM9P49957 279 aa4.33□□□□□ -1.72
CAF4YKR036C YGL204CP53089 101 aa4.33□□□□□ -1.72
CAF4YKR036C RPL34AP87262 121 aaPredicted RBP4.33□□□□□ -1.72
CAF4YKR036C CGI121Q03705 181 aaKnown RBP4.33□□□□□ -1.72
CAF4YKR036C YDR444WQ04093 687 aa4.33□□□□□ -1.72
CAF4YKR036C HNT1Q04344 158 aaKnown RBP4.33□□□□□ -1.72
CAF4YKR036C CTS2Q06350 511 aa4.33□□□□□ -1.72
CAF4YKR036C YPR147CQ06522 304 aaKnown RBP4.33□□□□□ -1.72
CAF4YKR036C SWM1Q12379 170 aa4.33□□□□□ -1.72
CAF4YKR036C PAR32Q12515 295 aaKnown RBP4.33□□□□□ -1.72
CAF4YKR036C YAR066WP0CX18 203 aa4.33□□□□□ -1.72
CAF4YKR036C YHR214WP0CX19 203 aa4.33□□□□□ -1.72
CAF4YKR036C DPM1P14020 267 aaKnown RBP4.33□□□□□ -1.72
CAF4YKR036C TRX3P25372 127 aa4.33□□□□□ -1.72
CAF4YKR036C NFS1P25374 497 aa4.33□□□□□ -1.72
CAF4YKR036C IDH2P28241 369 aaKnown RBP4.33□□□□□ -1.72
CAF4YKR036C FMT1P32785 401 aa4.33□□□□□ -1.72
CAF4YKR036C YKL102CP34249 101 aa4.33□□□□□ -1.72
CAF4YKR036C YBR220CP38318 560 aa4.33□□□□□ -1.72
CAF4YKR036C HSE1P38753 452 aa4.33□□□□□ -1.72
CAF4YKR036C FLO5P38894 1075 aa4.33□□□□□ -1.72
CAF4YKR036C YEA6P39953 335 aa4.33□□□□□ -1.72
CAF4YKR036C SMB1P40018 196 aaKnown RBP4.33□□□□□ -1.72
CAF4YKR036C NEO1P40527 1151 aa4.33□□□□□ -1.72
CAF4YKR036C MET28P40573 187 aa4.33□□□□□ -1.72
CAF4YKR036C YML018CQ03730 393 aa4.33□□□□□ -1.72
CAF4YKR036C HED1Q03937 162 aa4.33□□□□□ -1.72
CAF4YKR036C ROY1Q04847 553 aa4.33□□□□□ -1.72
CAF4YKR036C RSF1Q05043 376 aa4.33□□□□□ -1.72
CAF4YKR036C ATG39Q06159 398 aa4.33□□□□□ -1.72
CAF4YKR036C MCH1Q07376 486 aa4.33□□□□□ -1.72
CAF4YKR036C YLR030WQ07967 263 aa4.33□□□□□ -1.72
CAF4YKR036C YOL073CQ08232 322 aa4.33□□□□□ -1.72
CAF4YKR036C YOR015WQ12169 119 aa4.33□□□□□ -1.72
CAF4YKR036C ODC2Q99297 307 aa4.33□□□□□ -1.72
CAF4YKR036C SAL1D6W196 494 aa4.32□□□□□ -1.72
CAF4YKR036C MBF1O14467 151 aaKnown RBP4.32□□□□□ -1.72
CAF4YKR036C IMG1P25626 169 aa4.32□□□□□ -1.72
CAF4YKR036C ARO2P28777 376 aaKnown RBP4.32□□□□□ -1.72
CAF4YKR036C UPS2P35200 230 aa4.32□□□□□ -1.72
CAF4YKR036C AME1P38313 324 aa4.32□□□□□ -1.72
CAF4YKR036C SDS24P38314 527 aa4.32□□□□□ -1.72
CAF4YKR036C TAE1P38340 232 aa4.32□□□□□ -1.72
CAF4YKR036C INM1P38710 295 aa4.32□□□□□ -1.72
CAF4YKR036C RPF1P38805 295 aaKnown RBP4.32□□□□□ -1.72
CAF4YKR036C YEA4P40004 342 aa4.32□□□□□ -1.72
CAF4YKR036C RPL34BP40525 121 aaKnown RBP4.32□□□□□ -1.72
CAF4YKR036C CIN2P46670 268 aa4.32□□□□□ -1.72
CAF4YKR036C IKS1P47042 667 aa4.32□□□□□ -1.72
CAF4YKR036C MTM1P53320 366 aa4.32□□□□□ -1.72
CAF4YKR036C NRM1P53718 249 aa4.32□□□□□ -1.72
CAF4YKR036C YNL260CP53846 198 aa4.32□□□□□ -1.72
CAF4YKR036C YNL143CP53908 130 aa4.32□□□□□ -1.72
CAF4YKR036C CCE1Q03702 353 aa4.32□□□□□ -1.72
CAF4YKR036C POL2P21951 2222 aaKnown RBP4.32□□□□□ -1.72
CAF4YKR036C CYC7P00045 113 aa4.31□□□□□ -1.72
CAF4YKR036C MES1P00958 751 aaKnown RBP4.31□□□□□ -1.72
CAF4YKR036C YKR104WP0CE69 306 aa4.31□□□□□ -1.72
CAF4YKR036C FUN19P28003 413 aaPredicted RBP4.31□□□□□ -1.72
CAF4YKR036C YPT53P36019 220 aa4.31□□□□□ -1.72
CAF4YKR036C SLM6P38343 150 aa4.31□□□□□ -1.72
CAF4YKR036C YHL044WP38727 235 aa4.31□□□□□ -1.72
CAF4YKR036C PEX7P39108 375 aa4.31□□□□□ -1.72
Retrieved 100 of 5,963 RNA–protein pairs in 18.4 ms