RNA–Protein interactions for RNA: YDR235W

PRP42, Transcript of U1 snRNP protein involved in splicing, yeastyeast

Gene PRP42, Length 1,635 nt, Biotype protein coding.

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RNA Protein Prediction (catRAPID) Interaction (RIP-Chip)
Gene Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score Detected Interaction
PRP42YDR235W ICE2P40499 491 aa0.22□□□□□ -2.37
PRP42YDR235W RPL37AP49166 88 aaKnown RBP0.22□□□□□ -2.37
PRP42YDR235W BOL2P53082 120 aa0.22□□□□□ -2.37
PRP42YDR235W SPG3Q04398 127 aaPredicted RBP0.22□□□□□ -2.37
PRP42YDR235W YML096WQ04489 525 aa0.22□□□□□ -2.37
PRP42YDR235W YPL162CQ12042 273 aa0.22□□□□□ -2.37
PRP42YDR235W YLR126CQ12288 251 aa0.22□□□□□ -2.37
PRP42YDR235W MET5P47169 1442 aa0.22□□□□□ -2.37
PRP42YDR235W MSF1P08425 469 aa0.21□□□□□ -2.38
PRP42YDR235W RPL27BP0C2H7 136 aaKnown RBP0.21□□□□□ -2.38
PRP42YDR235W YPR170W-BP0C5R9 85 aa0.21□□□□□ -2.38
PRP42YDR235W TCP1P12612 559 aaKnown RBP0.21□□□□□ -2.38
PRP42YDR235W RSR1P13856 272 aa0.21□□□□□ -2.38
PRP42YDR235W OM45P16547 393 aa0.21□□□□□ -2.38
PRP42YDR235W TMA19P35691 167 aaKnown RBP0.21□□□□□ -2.38
PRP42YDR235W RIB1P38066 345 aa0.21□□□□□ -2.38
PRP42YDR235W GPI8P49018 411 aa0.21□□□□□ -2.38
PRP42YDR235W SAY1P53324 424 aa0.21□□□□□ -2.38
PRP42YDR235W MPA43P53583 542 aaPredicted RBP0.21□□□□□ -2.38
PRP42YDR235W ABF2Q02486 183 aa0.21□□□□□ -2.38
PRP42YDR235W YMD8Q03697 442 aa0.21□□□□□ -2.38
PRP42YDR235W CSM4Q08955 156 aa0.21□□□□□ -2.38
PRP42YDR235W MSH5Q12175 901 aa0.21□□□□□ -2.38
PRP42YDR235W YOL107WQ12239 342 aa0.21□□□□□ -2.38
PRP42YDR235W YOR029WQ12243 111 aa0.21□□□□□ -2.38
PRP42YDR235W YHR139C-AO13536 103 aa0.2□□□□□ -2.38
PRP42YDR235W MRPS28P21771 286 aa0.2□□□□□ -2.38
PRP42YDR235W YET1P35723 206 aa0.2□□□□□ -2.38
PRP42YDR235W GAA1P39012 614 aa0.2□□□□□ -2.38
PRP42YDR235W YER076CP40049 302 aa0.2□□□□□ -2.38
PRP42YDR235W RIO2P40160 425 aaKnown RBP0.2□□□□□ -2.38
PRP42YDR235W RSM25P40496 264 aa0.2□□□□□ -2.38
PRP42YDR235W YRB2P40517 327 aa0.2□□□□□ -2.38
PRP42YDR235W RPL37BP51402 88 aaKnown RBP0.2□□□□□ -2.38
PRP42YDR235W AIF1P52923 378 aa0.2□□□□□ -2.38
PRP42YDR235W YNR077CP53758 84 aa0.2□□□□□ -2.38
PRP42YDR235W UBC7Q02159 165 aa0.2□□□□□ -2.38
PRP42YDR235W TRM12Q04235 462 aa0.2□□□□□ -2.38
PRP42YDR235W ANT1Q06497 328 aa0.2□□□□□ -2.38
PRP42YDR235W PSF1Q12488 208 aa0.2□□□□□ -2.38
PRP42YDR235W YPL229WQ99395 206 aa0.2□□□□□ -2.38
PRP42YDR235W MSB2P32334 1306 aa0.2□□□□□ -2.38
PRP42YDR235W NSP1P14907 823 aaKnown RBP0.2□□□□□ -2.38
PRP42YDR235W ATG22P25568 528 aa0.2□□□□□ -2.38
PRP42YDR235W YKL075CP36083 450 aa0.2□□□□□ -2.38
PRP42YDR235W RTT105P40063 208 aa0.2□□□□□ -2.38
PRP42YDR235W HUA1P40325 198 aa0.2□□□□□ -2.38
PRP42YDR235W HOC1P47124 396 aa0.2□□□□□ -2.38
PRP42YDR235W MRPL50P53724 139 aa0.2□□□□□ -2.38
PRP42YDR235W YNL010WP53981 241 aaKnown RBP0.2□□□□□ -2.38
PRP42YDR235W SNZ1Q03148 297 aa0.2□□□□□ -2.38
PRP42YDR235W LPP1Q04396 274 aa0.2□□□□□ -2.38
PRP42YDR235W YNL146C-AQ3E7Z1 64 aa0.2□□□□□ -2.38
PRP42YDR235W PDR18P53756 1333 aa0.19□□□□□ -2.38
PRP42YDR235W TUS1Q06412 1307 aa0.19□□□□□ -2.38
PRP42YDR235W REP2P03872 296 aa0.19□□□□□ -2.38
PRP42YDR235W YLR156WP0CE96 114 aa0.19□□□□□ -2.38
PRP42YDR235W YLR159WP0CE97 114 aa0.19□□□□□ -2.38
PRP42YDR235W YLR161WP0CE98 114 aa0.19□□□□□ -2.38
PRP42YDR235W TFC1P32367 649 aa0.19□□□□□ -2.38
PRP42YDR235W SRB4P32569 687 aa0.19□□□□□ -2.38
PRP42YDR235W RIB7P33312 244 aa0.19□□□□□ -2.38
PRP42YDR235W KDX1P36005 433 aa0.19□□□□□ -2.38
PRP42YDR235W VPS21P36017 210 aaKnown RBP0.19□□□□□ -2.38
PRP42YDR235W TVP38P36164 337 aa0.19□□□□□ -2.38
PRP42YDR235W MRPL28P36527 147 aa0.19□□□□□ -2.38
PRP42YDR235W CUE1P38428 203 aa0.19□□□□□ -2.38
PRP42YDR235W URA8P38627 578 aaPredicted RBP0.19□□□□□ -2.38
PRP42YDR235W DOG2P38773 246 aa0.19□□□□□ -2.38
PRP42YDR235W YEL067CP39978 195 aa0.19□□□□□ -2.38
PRP42YDR235W IRC22P40006 225 aa0.19□□□□□ -2.38
PRP42YDR235W PEX17P40155 199 aa0.19□□□□□ -2.38
PRP42YDR235W ERJ5P43613 295 aaPredicted RBP0.19□□□□□ -2.38
PRP42YDR235W BNA6P43619 295 aa0.19□□□□□ -2.38
PRP42YDR235W EAF6P47128 113 aa0.19□□□□□ -2.38
PRP42YDR235W MCM22P47167 239 aa0.19□□□□□ -2.38
PRP42YDR235W TRM9P49957 279 aa0.19□□□□□ -2.38
PRP42YDR235W DOC1P53068 250 aa0.19□□□□□ -2.38
PRP42YDR235W NSA1P53136 463 aaPredicted RBP0.19□□□□□ -2.38
PRP42YDR235W NOP13P53883 403 aaKnown RBP RIP-Chip data0.19□□□□□ -2.38not detected
PRP42YDR235W GAS3Q03655 524 aa0.19□□□□□ -2.38
PRP42YDR235W YMR007WQ03675 126 aa0.19□□□□□ -2.38
PRP42YDR235W YML108WQ03759 105 aa0.19□□□□□ -2.38
PRP42YDR235W YDR248CQ03786 193 aa0.19□□□□□ -2.38
PRP42YDR235W KAP95Q06142 861 aaKnown RBP0.19□□□□□ -2.38
PRP42YDR235W PAM18Q07914 168 aa0.19□□□□□ -2.38
PRP42YDR235W YDL180WQ12301 547 aa0.19□□□□□ -2.38
PRP42YDR235W YER188C-AP0C0V2 99 aa0.18□□□□□ -2.38
PRP42YDR235W AQY2P0CD90 149 aa0.18□□□□□ -2.38
PRP42YDR235W SNC2P33328 115 aa0.18□□□□□ -2.38
PRP42YDR235W SRY1P36007 326 aa0.18□□□□□ -2.38
PRP42YDR235W SKG1P36169 355 aa0.18□□□□□ -2.38
PRP42YDR235W MRPL17P36528 281 aa0.18□□□□□ -2.38
PRP42YDR235W UMP1P38293 148 aa0.18□□□□□ -2.38
PRP42YDR235W YBR209WP38311 105 aa0.18□□□□□ -2.38
PRP42YDR235W POP4P38336 279 aa0.18□□□□□ -2.38
PRP42YDR235W PRE6P40303 254 aaKnown RBP0.18□□□□□ -2.38
PRP42YDR235W SOK1P40317 901 aa0.18□□□□□ -2.38
PRP42YDR235W YJR149WP47177 404 aa0.18□□□□□ -2.38
PRP42YDR235W KNH1P50112 268 aa0.18□□□□□ -2.38
Retrieved 100 of 5,963 RNA–protein pairs in 74.1 ms