RNA–Protein interactions for RNA: ENST00000486184.1

NUP50-216, Transcript of nucleoporin 50, humanhuman

TSL 3

Gene NUP50, Length 821 nt, Biotype processed transcript, Subcellular localisation Cytosol, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
NUP50-216ENST00000486184 DNAJB4Q9UDY4 337 aa12.33□□□□□ -0.44
NUP50-216ENST00000486184 PRG3Q9Y2Y8 225 aaPredicted RBP12.33□□□□□ -0.44
NUP50-216ENST00000486184 SOX1O00570 391 aaPredicted RBP12.32□□□□□ -0.44
NUP50-216ENST00000486184 PODXLO00592 558 aa12.32□□□□□ -0.44
NUP50-216ENST00000486184 NRP1O14786 923 aa12.32□□□□□ -0.44
NUP50-216ENST00000486184 MEFVO15553 781 aaPredicted RBP12.32□□□□□ -0.44
NUP50-216ENST00000486184 STX10O60499 249 aa12.32□□□□□ -0.44
NUP50-216ENST00000486184 PHACTR2O75167 634 aa12.32□□□□□ -0.44
NUP50-216ENST00000486184 RB1P06400 928 aa12.32□□□□□ -0.44
NUP50-216ENST00000486184 RPL9P32969 192 aaKnown RBP12.32□□□□□ -0.44
NUP50-216ENST00000486184 PBX3P40426 434 aa12.32□□□□□ -0.44
NUP50-216ENST00000486184 SLC11A1P49279 550 aa12.32□□□□□ -0.44
NUP50-216ENST00000486184 VAMP7P51809 220 aa12.32□□□□□ -0.44
NUP50-216ENST00000486184 AP3M2P53677 418 aa12.32□□□□□ -0.44
NUP50-216ENST00000486184 BFSP1Q12934 665 aa12.32□□□□□ -0.44
NUP50-216ENST00000486184 DUOXA2Q1HG44 320 aa12.32□□□□□ -0.44
NUP50-216ENST00000486184 EPC2Q52LR7 807 aa12.32□□□□□ -0.44
NUP50-216ENST00000486184 DCAF17Q5H9S7 520 aaPredicted RBP12.32□□□□□ -0.44
NUP50-216ENST00000486184 TCERG1LQ5VWI1 586 aa12.32□□□□□ -0.44
NUP50-216ENST00000486184 C11orf57Q6ZUT1 292 aaPredicted RBP12.32□□□□□ -0.44
NUP50-216ENST00000486184 FILIP1Q7Z7B0 1213 aa12.32□□□□□ -0.44
NUP50-216ENST00000486184 TMC2Q8TDI7 906 aa12.32□□□□□ -0.44
NUP50-216ENST00000486184 LRCH3Q96II8 777 aa12.32□□□□□ -0.44
NUP50-216ENST00000486184 DUSP9Q99956 384 aaKnown RBP12.32□□□□□ -0.44
NUP50-216ENST00000486184 GZF1Q9H116 711 aaPredicted RBP12.32□□□□□ -0.44
NUP50-216ENST00000486184 GOLGA2P5Q9HBQ8 144 aa12.32□□□□□ -0.44
NUP50-216ENST00000486184 DPP3Q9NY33 737 aa12.32□□□□□ -0.44
NUP50-216ENST00000486184 TUBGCP4Q9UGJ1 667 aa12.32□□□□□ -0.44
NUP50-216ENST00000486184 ARMCX3Q9UH62 379 aaPredicted RBP12.32□□□□□ -0.44
NUP50-216ENST00000486184 NUB1Q9Y5A7 615 aa12.32□□□□□ -0.44
NUP50-216ENST00000486184 NT5C1B-RDH14C9J2C7 533 aa12.31□□□□□ -0.44
NUP50-216ENST00000486184 TADA2AO75478 443 aa12.31□□□□□ -0.44
NUP50-216ENST00000486184 ARHGEF15O94989 841 aa12.31□□□□□ -0.44
NUP50-216ENST00000486184 GALTP07902 379 aa12.31□□□□□ -0.44
NUP50-216ENST00000486184 KRT19P08727 400 aa12.31□□□□□ -0.44
NUP50-216ENST00000486184 CLCNKBP51801 687 aa12.31□□□□□ -0.44
NUP50-216ENST00000486184 SOX4Q06945 474 aaPredicted RBP12.31□□□□□ -0.44
NUP50-216ENST00000486184 BIRC3Q13489 604 aa12.31□□□□□ -0.44
NUP50-216ENST00000486184 GPM6BQ13491 265 aa12.31□□□□□ -0.44
NUP50-216ENST00000486184 BMS1Q14692 1282 aaKnown RBP12.31□□□□□ -0.44
NUP50-216ENST00000486184 NAB2Q15742 525 aa12.31□□□□□ -0.44
NUP50-216ENST00000486184 SPATA1Q5VX52 437 aa12.31□□□□□ -0.44
NUP50-216ENST00000486184 LMBRD2Q68DH5 695 aaPredicted RBP12.31□□□□□ -0.44
NUP50-216ENST00000486184 FRMD5Q7Z6J6 570 aa12.31□□□□□ -0.44
NUP50-216ENST00000486184 ZC3H3Q8IXZ2 948 aaKnown RBP12.31□□□□□ -0.44
NUP50-216ENST00000486184 EFCAB13Q8IY85 973 aa12.31□□□□□ -0.44
NUP50-216ENST00000486184 SLC39A11Q8N1S5 342 aa12.31□□□□□ -0.44
NUP50-216ENST00000486184 KLHL23Q8NBE8 558 aa12.31□□□□□ -0.44
NUP50-216ENST00000486184 PARD3BQ8TEW8 1205 aa12.31□□□□□ -0.44
NUP50-216ENST00000486184 ZNF560Q96MR9 790 aa12.31□□□□□ -0.44
NUP50-216ENST00000486184 MTMR12Q9C0I1 747 aa12.31□□□□□ -0.44
NUP50-216ENST00000486184 MMRN2Q9H8L6 949 aa12.31□□□□□ -0.44
NUP50-216ENST00000486184 INTS13Q9NVM9 706 aa12.31□□□□□ -0.44
NUP50-216ENST00000486184 STK39Q9UEW8 545 aa12.31□□□□□ -0.44
NUP50-216ENST00000486184 PUF60Q9UHX1 559 aaKnown RBP12.31□□□□□ -0.44
NUP50-216ENST00000486184 ADAM28Q9UKQ2 775 aa12.31□□□□□ -0.44
NUP50-216ENST00000486184 ITGA11Q9UKX5 1188 aa12.31□□□□□ -0.44
NUP50-216ENST00000486184 SCN1AP35498 2009 aa12.3□□□□□ -0.44
NUP50-216ENST00000486184 LRRIQ3A6PVS8 624 aaPredicted RBP12.3□□□□□ -0.44
NUP50-216ENST00000486184 SMTNL1A8MU46 457 aa12.3□□□□□ -0.44
NUP50-216ENST00000486184 BECN2A8MW95 431 aa12.3□□□□□ -0.44
NUP50-216ENST00000486184 C5orf67F2Z3F1 127 aa12.3□□□□□ -0.44
NUP50-216ENST00000486184 TRAPPC3O43617 180 aa12.3□□□□□ -0.44
NUP50-216ENST00000486184 B4GALT3O60512 393 aa12.3□□□□□ -0.44
NUP50-216ENST00000486184 FGF18O76093 207 aa12.3□□□□□ -0.44
NUP50-216ENST00000486184 B3GAT3O94766 335 aa12.3□□□□□ -0.44
NUP50-216ENST00000486184 CAVIN2O95810 425 aa12.3□□□□□ -0.44
NUP50-216ENST00000486184 ITGB3P05106 788 aa12.3□□□□□ -0.44
NUP50-216ENST00000486184 LRPAP1P30533 357 aa12.3□□□□□ -0.44
NUP50-216ENST00000486184 CA8P35219 290 aa12.3□□□□□ -0.44
NUP50-216ENST00000486184 CLCN6P51797 869 aa12.3□□□□□ -0.44
NUP50-216ENST00000486184 GUCY2FP51841 1108 aa12.3□□□□□ -0.44
NUP50-216ENST00000486184 WNT7BP56706 349 aa12.3□□□□□ -0.44
NUP50-216ENST00000486184 MYL5Q02045 173 aa12.3□□□□□ -0.44
NUP50-216ENST00000486184 ENPEPQ07075 957 aa12.3□□□□□ -0.44
NUP50-216ENST00000486184 ELAVL2Q12926 359 aaKnown RBP12.3□□□□□ -0.44
NUP50-216ENST00000486184 TRPC3Q13507 836 aa12.3□□□□□ -0.44
NUP50-216ENST00000486184 ZBTB6Q15916 424 aa12.3□□□□□ -0.44
NUP50-216ENST00000486184 UPP1Q16831 310 aa12.3□□□□□ -0.44
NUP50-216ENST00000486184 GPR153Q6NV75 609 aa12.3□□□□□ -0.44
NUP50-216ENST00000486184 DCLRE1AQ6PJP8 1040 aa12.3□□□□□ -0.44
NUP50-216ENST00000486184 ENOX1Q8TC92 643 aaKnown RBP12.3□□□□□ -0.44
NUP50-216ENST00000486184 HASPINQ8TF76 798 aa12.3□□□□□ -0.44
NUP50-216ENST00000486184 RABGGTAQ92696 567 aa12.3□□□□□ -0.44
NUP50-216ENST00000486184 IGSF21Q96ID5 467 aa12.3□□□□□ -0.44
NUP50-216ENST00000486184 POP1Q99575 1024 aaKnown RBP12.3□□□□□ -0.44
NUP50-216ENST00000486184 THAP9Q9H5L6 903 aa12.3□□□□□ -0.44
NUP50-216ENST00000486184 CACNG4Q9UBN1 327 aa12.3□□□□□ -0.44
NUP50-216ENST00000486184 NFE2L3Q9Y4A8 694 aa12.3□□□□□ -0.44
NUP50-216ENST00000486184 SF3B1O75533 1304 aaKnown RBP eCLIP12.3□□□□□ -0.442e-7■■■■■ 41.4
NUP50-216ENST00000486184 ATG2AQ2TAZ0 1938 aa12.29□□□□□ -0.44
NUP50-216ENST00000486184 H3BNC9 293 aa12.29□□□□□ -0.44
NUP50-216ENST00000486184 IKBKBO14920 756 aa12.29□□□□□ -0.44
NUP50-216ENST00000486184 LPXNO60711 386 aa12.29□□□□□ -0.44
NUP50-216ENST00000486184 KIF4AO95239 1232 aa12.29□□□□□ -0.44
NUP50-216ENST00000486184 TPM2P07951 284 aa12.29□□□□□ -0.44
NUP50-216ENST00000486184 LINC00271P0C7V0 271 aa12.29□□□□□ -0.44
NUP50-216ENST00000486184 TRIM49P0CI25 452 aa12.29□□□□□ -0.44
NUP50-216ENST00000486184 TRIM49CP0CI26 452 aa12.29□□□□□ -0.44
NUP50-216ENST00000486184 POLR2BP30876 1174 aaKnown RBP12.29□□□□□ -0.44
Retrieved 100 of 20,778 RNA–protein pairs in 30.4 ms