RNA–Protein interactions for RNA: YLR268W

SEC22, Transcript of R-SNARE protein, yeastyeast

Gene SEC22, Length 645 nt, Biotype protein coding, Subcellular localisation Cytosol, Endoplasmic reticulum .

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RNA Protein Prediction (catRAPID) Interaction (RIP-Chip)
Gene Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score Detected Interaction
SEC22YLR268W YOR062CP36025 268 aa1.3□□□□□ -2.2
SEC22YLR268W YKL075CP36083 450 aa1.3□□□□□ -2.2
SEC22YLR268W LDB7P38210 180 aa1.3□□□□□ -2.2
SEC22YLR268W YHR125WP38831 101 aa1.3□□□□□ -2.2
SEC22YLR268W SNX4P47057 423 aa1.3□□□□□ -2.2
SEC22YLR268W HAM1P47119 197 aaKnown RBP1.3□□□□□ -2.2
SEC22YLR268W NUP84P52891 726 aa1.3□□□□□ -2.2
SEC22YLR268W YGR026WP53217 278 aa1.3□□□□□ -2.2
SEC22YLR268W YNL046WP53956 172 aa1.3□□□□□ -2.2
SEC22YLR268W INM2Q05533 292 aa1.3□□□□□ -2.2
SEC22YLR268W YLR283WQ05867 314 aa1.3□□□□□ -2.2
SEC22YLR268W YPR172WQ06608 200 aa1.3□□□□□ -2.2
SEC22YLR268W YLR030WQ07967 263 aa1.3□□□□□ -2.2
SEC22YLR268W MHT1Q12525 324 aa1.3□□□□□ -2.2
SEC22YLR268W COX5AP00424 153 aa1.29□□□□□ -2.2
SEC22YLR268W ADH3P07246 375 aaKnown RBP1.29□□□□□ -2.2
SEC22YLR268W ERD2P18414 219 aa1.29□□□□□ -2.2
SEC22YLR268W CUE1P38428 203 aa1.29□□□□□ -2.2
SEC22YLR268W GRE3P38715 327 aaKnown RBP RIP-Chip data1.29□□□□□ -2.2not detected
SEC22YLR268W FIS1P40515 155 aa1.29□□□□□ -2.2
SEC22YLR268W SMD3P43321 101 aaKnown RBP1.29□□□□□ -2.2
SEC22YLR268W ILM1P47155 203 aa1.29□□□□□ -2.2
SEC22YLR268W DAN1P47178 298 aa1.29□□□□□ -2.2
SEC22YLR268W GTR2P53290 341 aa1.29□□□□□ -2.2
SEC22YLR268W YPL257WQ08974 193 aa1.29□□□□□ -2.2
SEC22YLR268W AKR2Q12013 749 aa1.29□□□□□ -2.2
SEC22YLR268W HTL1Q9URQ5 78 aa1.29□□□□□ -2.2
SEC22YLR268W DSF1P0CX08 502 aa1.28□□□□□ -2.2
SEC22YLR268W YNR073CP0CX09 502 aa1.28□□□□□ -2.2
SEC22YLR268W MATALPHA1P0CY06 175 aa1.28□□□□□ -2.2
SEC22YLR268W HMLALPHA1P0CY07 175 aa1.28□□□□□ -2.2
SEC22YLR268W RPO26P20435 155 aa1.28□□□□□ -2.2
SEC22YLR268W RPS5P26783 225 aaKnown RBP1.28□□□□□ -2.2
SEC22YLR268W YPT52P36018 234 aaKnown RBP1.28□□□□□ -2.2
SEC22YLR268W NRG2P38082 220 aa1.28□□□□□ -2.2
SEC22YLR268W YAR068WP39564 161 aa1.28□□□□□ -2.2
SEC22YLR268W YJR056CP47115 236 aa1.28□□□□□ -2.2
SEC22YLR268W PRM15Q03262 622 aa1.28□□□□□ -2.2
SEC22YLR268W FKS1P38631 1876 aaKnown RBP1.28□□□□□ -2.2
SEC22YLR268W SIR4P11978 1358 aa1.27□□□□□ -2.21
SEC22YLR268W SNA3P14359 133 aa1.27□□□□□ -2.21
SEC22YLR268W DOA4P32571 926 aa1.27□□□□□ -2.21
SEC22YLR268W VMA11P32842 164 aa1.27□□□□□ -2.21
SEC22YLR268W VPS21P36017 210 aaKnown RBP1.27□□□□□ -2.21
SEC22YLR268W YER085CP40058 173 aa1.27□□□□□ -2.21
SEC22YLR268W COX15P40086 486 aa1.27□□□□□ -2.21
SEC22YLR268W YJL027CP47063 138 aaPredicted RBP1.27□□□□□ -2.21
SEC22YLR268W MCM22P47167 239 aa1.27□□□□□ -2.21
SEC22YLR268W NOP13P53883 403 aaKnown RBP RIP-Chip data1.27□□□□□ -2.21not detected
SEC22YLR268W DAD3P69850 94 aa1.27□□□□□ -2.21
SEC22YLR268W ATG39Q06159 398 aa1.27□□□□□ -2.21
SEC22YLR268W MSA1Q08471 629 aa1.27□□□□□ -2.21
SEC22YLR268W NIP7Q08962 181 aaKnown RBP1.27□□□□□ -2.21
SEC22YLR268W YOR020W-AQ3E824 90 aa1.27□□□□□ -2.21
SEC22YLR268W RPL9AP05738 191 aaKnown RBP1.26□□□□□ -2.21
SEC22YLR268W BCY1P07278 416 aaKnown RBP1.26□□□□□ -2.21
SEC22YLR268W CDC10P25342 322 aaKnown RBP1.26□□□□□ -2.21
SEC22YLR268W RIB1P38066 345 aa1.26□□□□□ -2.21
SEC22YLR268W DOG1P38774 246 aa1.26□□□□□ -2.21
SEC22YLR268W RPF1P38805 295 aaKnown RBP1.26□□□□□ -2.21
SEC22YLR268W CTR2P38865 189 aa1.26□□□□□ -2.21
SEC22YLR268W CAT5P41735 233 aa1.26□□□□□ -2.21
SEC22YLR268W RPA43P46669 326 aa1.26□□□□□ -2.21
SEC22YLR268W RPC17P47076 161 aa1.26□□□□□ -2.21
SEC22YLR268W YJR149WP47177 404 aa1.26□□□□□ -2.21
SEC22YLR268W TRM9P49957 279 aa1.26□□□□□ -2.21
SEC22YLR268W RPL9BP51401 191 aaKnown RBP1.26□□□□□ -2.21
SEC22YLR268W NSA1P53136 463 aaPredicted RBP1.26□□□□□ -2.21
SEC22YLR268W DCR2Q05924 578 aa1.26□□□□□ -2.21
SEC22YLR268W SSQ1Q05931 657 aaPredicted RBP1.26□□□□□ -2.21
SEC22YLR268W YHR086W-AQ3E746 53 aa1.26□□□□□ -2.21
SEC22YLR268W YPL229WQ99395 206 aa1.26□□□□□ -2.21
SEC22YLR268W RHO1P06780 209 aaKnown RBP1.25□□□□□ -2.21
SEC22YLR268W SPT3P06844 337 aa1.25□□□□□ -2.21
SEC22YLR268W GRX2P17695 143 aaKnown RBP1.25□□□□□ -2.21
SEC22YLR268W RPL24BP24000 155 aaKnown RBP1.25□□□□□ -2.21
SEC22YLR268W PEX4P29340 183 aa1.25□□□□□ -2.21
SEC22YLR268W VMA6P32366 345 aaKnown RBP1.25□□□□□ -2.21
SEC22YLR268W NTF2P33331 125 aaKnown RBP1.25□□□□□ -2.21
SEC22YLR268W BMH2P34730 273 aaKnown RBP1.25□□□□□ -2.21
SEC22YLR268W FCY21P40039 528 aa1.25□□□□□ -2.21
SEC22YLR268W RTR1P40084 226 aaPredicted RBP1.25□□□□□ -2.21
SEC22YLR268W PEX17P40155 199 aa1.25□□□□□ -2.21
SEC22YLR268W PRE6P40303 254 aaKnown RBP1.25□□□□□ -2.21
SEC22YLR268W CIS3P47001 227 aa1.25□□□□□ -2.21
SEC22YLR268W ABF2Q02486 183 aa1.25□□□□□ -2.21
SEC22YLR268W YML096WQ04489 525 aa1.25□□□□□ -2.21
SEC22YLR268W MSW1P04803 379 aa1.24□□□□□ -2.21
SEC22YLR268W FCY2P17064 533 aa1.24□□□□□ -2.21
SEC22YLR268W PPA2P28239 310 aa1.24□□□□□ -2.21
SEC22YLR268W MDH3P32419 343 aaKnown RBP RIP-Chip data1.24□□□□□ -2.21not detected
SEC22YLR268W SSO1P32867 290 aa1.24□□□□□ -2.21
SEC22YLR268W ECM33P38248 429 aaKnown RBP1.24□□□□□ -2.21
SEC22YLR268W TCD1P38756 429 aa1.24□□□□□ -2.21
SEC22YLR268W RSM25P40496 264 aa1.24□□□□□ -2.21
SEC22YLR268W TOS8P53147 276 aa1.24□□□□□ -2.21
SEC22YLR268W ERV29P53337 310 aa1.24□□□□□ -2.21
SEC22YLR268W YML108WQ03759 105 aa1.24□□□□□ -2.21
SEC22YLR268W TPO4Q12256 659 aa1.24□□□□□ -2.21
SEC22YLR268W ATO3Q12359 275 aa1.24□□□□□ -2.21
Retrieved 100 of 5,963 RNA–protein pairs in 44.7 ms