RNA–Protein interactions for RNA: YFR010W

UBP6, Transcript of Ubiquitin-specific protease, yeast

Gene UBP6, Length 1,500 nt, Biotype protein coding.

RNA		Protein				Prediction (catRAPID)		Interaction (RIP-Chip)
Gene	Ensembl Transcript ID	Gene	UniProt Accession	Length	Protein Status	Prediction Score	Prediction z-Score	Detected Interaction
UBP6	YFR010W	UTP23	Q12339	254 aa	Known RBP	3.6	□□□□□ -1.83
UBP6	YFR010W	TRM10	Q12400	293 aa		3.6	□□□□□ -1.83
UBP6	YFR010W	YPL119C-A	Q3E751	87 aa		3.6	□□□□□ -1.83
UBP6	YFR010W	CYC3	P06182	269 aa		3.59	□□□□□ -1.84
UBP6	YFR010W	SPO11	P23179	398 aa		3.59	□□□□□ -1.84
UBP6	YFR010W	OAC1	P32332	324 aa		3.59	□□□□□ -1.84
UBP6	YFR010W	KTI12	P34253	313 aa	Known RBP	3.59	□□□□□ -1.84
UBP6	YFR010W	SFK1	P35735	353 aa		3.59	□□□□□ -1.84
UBP6	YFR010W	SRY1	P36007	326 aa		3.59	□□□□□ -1.84
UBP6	YFR010W	FRE2	P36033	711 aa		3.59	□□□□□ -1.84
UBP6	YFR010W	MRPL24	P36525	258 aa	Predicted RBP	3.59	□□□□□ -1.84
UBP6	YFR010W	SCO2	P38072	301 aa		3.59	□□□□□ -1.84
UBP6	YFR010W	LAG1	P38703	411 aa		3.59	□□□□□ -1.84
UBP6	YFR010W	YHR127W	P38833	243 aa	Known RBP	3.59	□□□□□ -1.84
UBP6	YFR010W	LYS1	P38998	373 aa	RIP-Chip data	3.59	□□□□□ -1.84	not detected
UBP6	YFR010W	MST28	P39552	234 aa		3.59	□□□□□ -1.84
UBP6	YFR010W	RFC2	P40348	353 aa		3.59	□□□□□ -1.84
UBP6	YFR010W	MEP2	P41948	499 aa		3.59	□□□□□ -1.84
UBP6	YFR010W	WWM1	P43582	211 aa	Known RBP	3.59	□□□□□ -1.84
UBP6	YFR010W	ERJ5	P43613	295 aa	Predicted RBP	3.59	□□□□□ -1.84
UBP6	YFR010W	IKS1	P47042	667 aa		3.59	□□□□□ -1.84
UBP6	YFR010W	UFD1	P53044	361 aa		3.59	□□□□□ -1.84
UBP6	YFR010W	YPS5	P53057	165 aa		3.59	□□□□□ -1.84
UBP6	YFR010W	VHT1	P53241	593 aa		3.59	□□□□□ -1.84
UBP6	YFR010W	HCH1	P53834	153 aa		3.59	□□□□□ -1.84
UBP6	YFR010W	BOR1	P53838	576 aa		3.59	□□□□□ -1.84
UBP6	YFR010W	SWS2	P53937	143 aa		3.59	□□□□□ -1.84
UBP6	YFR010W	YMR010W	Q03687	405 aa		3.59	□□□□□ -1.84
UBP6	YFR010W	TSA2	Q04120	196 aa		3.59	□□□□□ -1.84
UBP6	YFR010W	YMR320W	Q04897	101 aa		3.59	□□□□□ -1.84
UBP6	YFR010W	COQ10	Q08058	207 aa		3.59	□□□□□ -1.84
UBP6	YFR010W	ZEO1	Q08245	113 aa		3.59	□□□□□ -1.84
UBP6	YFR010W	RDL2	Q08742	149 aa	Known RBP	3.59	□□□□□ -1.84
UBP6	YFR010W	YPL257W	Q08974	193 aa		3.59	□□□□□ -1.84
UBP6	YFR010W	MDM32	Q12171	622 aa		3.59	□□□□□ -1.84
UBP6	YFR010W	TRM732	Q03496	1420 aa		3.58	□□□□□ -1.84
UBP6	YFR010W	YER145C-A	A0A023PYF4	145 aa		3.58	□□□□□ -1.84
UBP6	YFR010W	GCN3	P14741	305 aa		3.58	□□□□□ -1.84
UBP6	YFR010W	NSP1	P14907	823 aa	Known RBP	3.58	□□□□□ -1.84
UBP6	YFR010W	LSB5	P25369	354 aa		3.58	□□□□□ -1.84
UBP6	YFR010W	BUB3	P26449	341 aa		3.58	□□□□□ -1.84
UBP6	YFR010W	PEX2	P32800	271 aa		3.58	□□□□□ -1.84
UBP6	YFR010W	GPX2	P38143	162 aa		3.58	□□□□□ -1.84
UBP6	YFR010W	VMA7	P39111	118 aa		3.58	□□□□□ -1.84
UBP6	YFR010W	YIL060W	P40519	144 aa		3.58	□□□□□ -1.84
UBP6	YFR010W	YFL064C	P43540	174 aa		3.58	□□□□□ -1.84
UBP6	YFR010W	BIR1	P47134	954 aa		3.58	□□□□□ -1.84
UBP6	YFR010W	ILM1	P47155	203 aa		3.58	□□□□□ -1.84
UBP6	YFR010W	COQ5	P49017	307 aa		3.58	□□□□□ -1.84
UBP6	YFR010W	UBC12	P52491	188 aa		3.58	□□□□□ -1.84
UBP6	YFR010W	YIP1	P53039	248 aa		3.58	□□□□□ -1.84
UBP6	YFR010W	TPN1	P53099	579 aa		3.58	□□□□□ -1.84
UBP6	YFR010W	PRM8	P53174	237 aa		3.58	□□□□□ -1.84
UBP6	YFR010W	ACT1	P60010	375 aa	Known RBP	3.58	□□□□□ -1.84
UBP6	YFR010W	ELP3	Q02908	557 aa	Known RBP	3.58	□□□□□ -1.84
UBP6	YFR010W	MRX11	Q03079	207 aa		3.58	□□□□□ -1.84
UBP6	YFR010W	FMN1	Q03778	218 aa		3.58	□□□□□ -1.84
UBP6	YFR010W	YDR278C	Q05612	105 aa		3.58	□□□□□ -1.84
UBP6	YFR010W	FAR10	Q06001	478 aa		3.58	□□□□□ -1.84
UBP6	YFR010W	SEI1	Q06058	285 aa		3.58	□□□□□ -1.84
UBP6	YFR010W	YPR202W	Q08993	238 aa		3.58	□□□□□ -1.84
UBP6	YFR010W	RFM1	Q12192	310 aa		3.58	□□□□□ -1.84
UBP6	YFR010W	ATP14	Q12349	124 aa		3.58	□□□□□ -1.84
UBP6	YFR010W	PSF1	Q12488	208 aa		3.58	□□□□□ -1.84
UBP6	YFR010W	MHT1	Q12525	324 aa		3.58	□□□□□ -1.84
UBP6	YFR010W	YDL085C-A	Q3E7B7	68 aa	Known RBP	3.58	□□□□□ -1.84
UBP6	YFR010W	POM152	P39685	1337 aa		3.57	□□□□□ -1.84
UBP6	YFR010W	COX5A	P00424	153 aa		3.57	□□□□□ -1.84
UBP6	YFR010W	REP1	P03871	373 aa		3.57	□□□□□ -1.84
UBP6	YFR010W	CDC7	P06243	507 aa		3.57	□□□□□ -1.84
UBP6	YFR010W	MRP49	P32388	137 aa		3.57	□□□□□ -1.84
UBP6	YFR010W	YGP1	P38616	354 aa	Known RBP	3.57	□□□□□ -1.84
UBP6	YFR010W	EXO1	P39875	702 aa		3.57	□□□□□ -1.84
UBP6	YFR010W	HAC1	P41546	238 aa		3.57	□□□□□ -1.84
UBP6	YFR010W	EGT2	P42835	1041 aa		3.57	□□□□□ -1.84
UBP6	YFR010W	YJR015W	P47090	510 aa		3.57	□□□□□ -1.84
UBP6	YFR010W	BXI1	P48558	297 aa		3.57	□□□□□ -1.84
UBP6	YFR010W	YNL184C	P53876	108 aa		3.57	□□□□□ -1.84
UBP6	YFR010W	RHO4	Q00246	291 aa		3.57	□□□□□ -1.84
UBP6	YFR010W	APS2	Q00381	147 aa		3.57	□□□□□ -1.84
UBP6	YFR010W	YPL014W	Q02606	381 aa		3.57	□□□□□ -1.84
UBP6	YFR010W	RSC9	Q03124	581 aa		3.57	□□□□□ -1.84
UBP6	YFR010W	UTP15	Q04305	513 aa	Known RBP	3.57	□□□□□ -1.84
UBP6	YFR010W	YMR027W	Q04371	470 aa		3.57	□□□□□ -1.84
UBP6	YFR010W	YDR124W	Q04608	324 aa		3.57	□□□□□ -1.84
UBP6	YFR010W	SUE1	Q06524	206 aa		3.57	□□□□□ -1.84
UBP6	YFR010W	HRD1	Q08109	551 aa		3.57	□□□□□ -1.84
UBP6	YFR010W	HTZ1	Q12692	134 aa	Known RBP	3.57	□□□□□ -1.84
UBP6	YFR010W	DDI2	P0CH63	225 aa		3.56	□□□□□ -1.84
UBP6	YFR010W	DDI3	P0CH64	225 aa		3.56	□□□□□ -1.84
UBP6	YFR010W	COQ3	P27680	312 aa		3.56	□□□□□ -1.84
UBP6	YFR010W	HYM1	P32464	399 aa		3.56	□□□□□ -1.84
UBP6	YFR010W	YCR041W	P37265	110 aa		3.56	□□□□□ -1.84
UBP6	YFR010W	YBR220C	P38318	560 aa		3.56	□□□□□ -1.84
UBP6	YFR010W	YHK8	P38776	514 aa		3.56	□□□□□ -1.84
UBP6	YFR010W	GEP4	P38812	185 aa		3.56	□□□□□ -1.84
UBP6	YFR010W	PEX22	P39718	180 aa		3.56	□□□□□ -1.84
UBP6	YFR010W	SER33	P40510	469 aa		3.56	□□□□□ -1.84
UBP6	YFR010W	YGL039W	P53183	348 aa	Known RBP	3.56	□□□□□ -1.84
UBP6	YFR010W	GPI17	Q04080	534 aa		3.56	□□□□□ -1.84

Retrieved 100 of 5,963 RNA–protein pairs in 34.2 ms