RNA–Protein interactions for RNA: ENST00000597136.1

TRIM28-207, Transcript of tripartite motif containing 28, humanhuman

TSL 2

Gene TRIM28, Length 1,552 nt, Biotype protein coding, Subcellular localisation Cytosol, Ribosome .

RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
TRIM28-207ENST00000597136 RECQL4O94761 1208 aa16.35■□□□□ 0.21
TRIM28-207ENST00000597136 DDHD2O94830 711 aa16.35■□□□□ 0.21
TRIM28-207ENST00000597136 MCF2P10911 925 aa16.35■□□□□ 0.21
TRIM28-207ENST00000597136 CCNE1P24864 410 aa16.35■□□□□ 0.21
TRIM28-207ENST00000597136 ADSSP30520 456 aa16.35■□□□□ 0.21
TRIM28-207ENST00000597136 PBX3P40426 434 aa16.35■□□□□ 0.21
TRIM28-207ENST00000597136 TNFSF9P41273 254 aa16.35■□□□□ 0.21
TRIM28-207ENST00000597136 MCL1Q07820 350 aa16.35■□□□□ 0.21
TRIM28-207ENST00000597136 DCAF4L1Q3SXM0 396 aa16.35■□□□□ 0.21
TRIM28-207ENST00000597136 EPC2Q52LR7 807 aa16.35■□□□□ 0.21
TRIM28-207ENST00000597136 P2RX5Q93086 422 aa16.35■□□□□ 0.21
TRIM28-207ENST00000597136 CBX8Q9HC52 389 aa16.35■□□□□ 0.21
TRIM28-207ENST00000597136 DNAJB4Q9UDY4 337 aa16.35■□□□□ 0.21
TRIM28-207ENST00000597136 RWDD2AQ9UIY3 292 aa16.35■□□□□ 0.21
TRIM28-207ENST00000597136 ZMYM2Q9UBW7 1377 aa16.35■□□□□ 0.21
TRIM28-207ENST00000597136 A0A0B4J269 797 aa16.34■□□□□ 0.21
TRIM28-207ENST00000597136 BMPR1AP36894 532 aa16.34■□□□□ 0.21
TRIM28-207ENST00000597136 SCNN1GP51170 649 aa16.34■□□□□ 0.21
TRIM28-207ENST00000597136 PMS1P54277 932 aaKnown RBP16.34■□□□□ 0.21
TRIM28-207ENST00000597136 STX17P56962 302 aa16.34■□□□□ 0.21
TRIM28-207ENST00000597136 NOLC1Q14978 699 aaKnown RBP eCLIP16.34■□□□□ 0.21
TRIM28-207ENST00000597136 SPOUT1Q5T280 376 aaKnown RBP16.34■□□□□ 0.21
TRIM28-207ENST00000597136 SYCP3Q8IZU3 236 aa16.34■□□□□ 0.21
TRIM28-207ENST00000597136 FAM200AQ8TCP9 573 aa16.34■□□□□ 0.21
TRIM28-207ENST00000597136 GBP3Q9H0R5 595 aa16.34■□□□□ 0.21
TRIM28-207ENST00000597136 NRDE2Q9H7Z3 1164 aa16.34■□□□□ 0.21
TRIM28-207ENST00000597136 MTMR10Q9NXD2 777 aa16.34■□□□□ 0.21
TRIM28-207ENST00000597136 GIT1Q9Y2X7 761 aa16.34■□□□□ 0.21
TRIM28-207ENST00000597136 TMEM265A0A087WTH1 108 aa16.34■□□□□ 0.21
TRIM28-207ENST00000597136 NT5C1B-RDH14C9J2C7 533 aa16.34■□□□□ 0.21
TRIM28-207ENST00000597136 PTGESO14684 152 aa16.34■□□□□ 0.21
TRIM28-207ENST00000597136 TGFB1I1O43294 461 aa16.34■□□□□ 0.21
TRIM28-207ENST00000597136 FAM189A1O60320 539 aa16.34■□□□□ 0.21
TRIM28-207ENST00000597136 GRM5P41594 1212 aa16.34■□□□□ 0.21
TRIM28-207ENST00000597136 IQCB1Q15051 598 aa16.34■□□□□ 0.21
TRIM28-207ENST00000597136 ZCWPW2Q504Y3 356 aa16.34■□□□□ 0.21
TRIM28-207ENST00000597136 ANKRD40Q6AI12 368 aa16.34■□□□□ 0.21
TRIM28-207ENST00000597136 TTI2Q6NXR4 508 aa16.34■□□□□ 0.21
TRIM28-207ENST00000597136 DHX40Q8IX18 779 aaKnown RBP16.34■□□□□ 0.21
TRIM28-207ENST00000597136 ENOX1Q8TC92 643 aaKnown RBP16.34■□□□□ 0.21
TRIM28-207ENST00000597136 GUCD1Q96NT3 240 aa16.34■□□□□ 0.21
TRIM28-207ENST00000597136 TMEM206Q9H813 350 aa16.34■□□□□ 0.21
TRIM28-207ENST00000597136 UBN1Q9NPG3 1134 aa16.34■□□□□ 0.21
TRIM28-207ENST00000597136 STYXL1Q9Y6J8 313 aa16.34■□□□□ 0.21
TRIM28-207ENST00000597136 BICDL2A1A5D9 508 aa16.33■□□□□ 0.2
TRIM28-207ENST00000597136 TRIM49BA6NDI0 452 aa16.33■□□□□ 0.2
TRIM28-207ENST00000597136 PDXKO00764 312 aa16.33■□□□□ 0.2
TRIM28-207ENST00000597136 IKBKBO14920 756 aa16.33■□□□□ 0.2
TRIM28-207ENST00000597136 INPPL1O15357 1258 aa16.33■□□□□ 0.2
TRIM28-207ENST00000597136 CTNNB1P35222 781 aa16.33■□□□□ 0.2
TRIM28-207ENST00000597136 RNASELQ05823 741 aaKnown RBP16.33■□□□□ 0.2
TRIM28-207ENST00000597136 FOXR2Q6PJQ5 311 aa16.33■□□□□ 0.2
TRIM28-207ENST00000597136 ALKAL1Q6UXT8 129 aa16.33■□□□□ 0.2
TRIM28-207ENST00000597136 HACE1Q8IYU2 909 aa16.33■□□□□ 0.2
TRIM28-207ENST00000597136 TMEM130Q8N3G9 435 aa16.33■□□□□ 0.2
TRIM28-207ENST00000597136 AOPEPQ8N6M6 819 aa16.33■□□□□ 0.2
TRIM28-207ENST00000597136 COLGALT1Q8NBJ5 622 aa16.33■□□□□ 0.2
TRIM28-207ENST00000597136 GDPD5Q8WTR4 605 aa16.33■□□□□ 0.2
TRIM28-207ENST00000597136 ACAP3Q96P50 834 aa16.33■□□□□ 0.2
TRIM28-207ENST00000597136 CBWD1Q9BRT8 395 aa16.33■□□□□ 0.2
TRIM28-207ENST00000597136 MSTO1Q9BUK6 570 aa16.33■□□□□ 0.2
TRIM28-207ENST00000597136 RBSNQ9H1K0 784 aa16.33■□□□□ 0.2
TRIM28-207ENST00000597136 PCIF1Q9H4Z3 704 aa16.33■□□□□ 0.2
TRIM28-207ENST00000597136 CACNG4Q9UBN1 327 aa16.33■□□□□ 0.2
TRIM28-207ENST00000597136 EXOC7Q9UPT5 735 aa16.33■□□□□ 0.2
TRIM28-207ENST00000597136 LPXNO60711 386 aa16.32■□□□□ 0.2
TRIM28-207ENST00000597136 ACOT2P49753 483 aa16.32■□□□□ 0.2
TRIM28-207ENST00000597136 MYL5Q02045 173 aa16.32■□□□□ 0.2
TRIM28-207ENST00000597136 LRRC63Q05C16 580 aa16.32■□□□□ 0.2
TRIM28-207ENST00000597136 ADGRE1Q14246 886 aa16.32■□□□□ 0.2
TRIM28-207ENST00000597136 SLC10A6Q3KNW5 377 aa16.32■□□□□ 0.2
TRIM28-207ENST00000597136 GLRA4Q5JXX5 417 aa16.32■□□□□ 0.2
TRIM28-207ENST00000597136 CRELD2Q6UXH1 353 aaPredicted RBP16.32■□□□□ 0.2
TRIM28-207ENST00000597136 LUZP1Q86V48 1076 aa16.32■□□□□ 0.2
TRIM28-207ENST00000597136 LRRC43Q8N309 656 aa16.32■□□□□ 0.2
TRIM28-207ENST00000597136 RNF214Q8ND24 703 aa16.32■□□□□ 0.2
TRIM28-207ENST00000597136 FBXO22Q8NEZ5 403 aa16.32■□□□□ 0.2
TRIM28-207ENST00000597136 URGCPQ8TCY9 931 aa16.32■□□□□ 0.2
TRIM28-207ENST00000597136 MYLIPQ8WY64 445 aa16.32■□□□□ 0.2
TRIM28-207ENST00000597136 POMGNT1Q8WZA1 660 aa16.32■□□□□ 0.2
TRIM28-207ENST00000597136 RABGGTAQ92696 567 aa16.32■□□□□ 0.2
TRIM28-207ENST00000597136 CDX2Q99626 313 aaPredicted RBP16.32■□□□□ 0.2
TRIM28-207ENST00000597136 DUSP9Q99956 384 aaKnown RBP16.32■□□□□ 0.2
TRIM28-207ENST00000597136 CCDC94Q9BW85 323 aaPredicted RBP16.32■□□□□ 0.2
TRIM28-207ENST00000597136 ALG13Q9NP73 1137 aaKnown RBP16.32■□□□□ 0.2
TRIM28-207ENST00000597136 TRAF3IP3Q9Y228 551 aa16.32■□□□□ 0.2
TRIM28-207ENST00000597136 MTCL1Q9Y4B5 1905 aaKnown RBP16.32■□□□□ 0.2
TRIM28-207ENST00000597136 GOLGA8IPA6NC78 632 aa16.31■□□□□ 0.2
TRIM28-207ENST00000597136 GOLGA8JA6NMD2 632 aa16.31■□□□□ 0.2
TRIM28-207ENST00000597136 CLIC2O15247 247 aa16.31■□□□□ 0.2
TRIM28-207ENST00000597136 OGTO15294 1046 aa16.31■□□□□ 0.2
TRIM28-207ENST00000597136 ZC3H11AO75152 810 aaKnown RBP eCLIP16.31■□□□□ 0.22e-13■■■□□ 16.2
TRIM28-207ENST00000597136 CXCL8P10145 99 aa16.31■□□□□ 0.2
TRIM28-207ENST00000597136 BCAR1P56945 870 aa16.31■□□□□ 0.2
TRIM28-207ENST00000597136 SPAG1Q07617 926 aa16.31■□□□□ 0.2
TRIM28-207ENST00000597136 NCAPHQ15003 741 aa16.31■□□□□ 0.2
TRIM28-207ENST00000597136 NAB2Q15742 525 aa16.31■□□□□ 0.2
TRIM28-207ENST00000597136 SPATA1Q5VX52 437 aa16.31■□□□□ 0.2
TRIM28-207ENST00000597136 KCNT2Q6UVM3 1135 aa16.31■□□□□ 0.2
TRIM28-207ENST00000597136 HS2ST1Q7LGA3 356 aa16.31■□□□□ 0.2
Retrieved 100 of 20,778 RNA–protein pairs in 119.8 ms