RNA–Protein interactions for RNA: ENST00000566078.1

CTCF-203, Transcript of CCCTC-binding factor, humanhuman

TSL 2

Gene CTCF, Length 1,627 nt, Biotype retained intron, Subcellular localisation Cytosol, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CTCF-203ENST00000566078 GHRP10912 638 aa33.11■■■□□ 2.89
CTCF-203ENST00000566078 GRM5P41594 1212 aa33.11■■■□□ 2.89
CTCF-203ENST00000566078 ATN1P54259 1190 aaPredicted RBP33.11■■■□□ 2.89
CTCF-203ENST00000566078 NFX1Q12986 1120 aaKnown RBP33.11■■■□□ 2.89
CTCF-203ENST00000566078 EPC2Q52LR7 807 aa33.11■■■□□ 2.89
CTCF-203ENST00000566078 ZNF516Q92618 1163 aa33.11■■■□□ 2.89
CTCF-203ENST00000566078 GANQ9H2C0 597 aa33.11■■■□□ 2.89
CTCF-203ENST00000566078 MROH7Q68CQ1 1323 aa33.11■■■□□ 2.89
CTCF-203ENST00000566078 KRT9P35527 623 aa33.1■■■□□ 2.89
CTCF-203ENST00000566078 OSBPL7Q9BZF2 842 aa33.1■■■□□ 2.89
CTCF-203ENST00000566078 GPR182O15218 404 aa33.1■■■□□ 2.89
CTCF-203ENST00000566078 IL18RAPO95256 599 aa33.1■■■□□ 2.89
CTCF-203ENST00000566078 PAK2Q13177 524 aa33.1■■■□□ 2.89
CTCF-203ENST00000566078 DPY19L2P1Q6NXN4 242 aa33.1■■■□□ 2.89
CTCF-203ENST00000566078 SV2AQ7L0J3 742 aa33.1■■■□□ 2.89
CTCF-203ENST00000566078 WDR49Q8IV35 697 aa33.1■■■□□ 2.89
CTCF-203ENST00000566078 CAGE1Q8TC20 777 aa33.1■■■□□ 2.89
CTCF-203ENST00000566078 DIS3LQ8TF46 1054 aaKnown RBP33.1■■■□□ 2.89
CTCF-203ENST00000566078 CCDC94Q9BW85 323 aaPredicted RBP33.1■■■□□ 2.89
CTCF-203ENST00000566078 AGO3Q9H9G7 860 aaKnown RBP33.1■■■□□ 2.89
CTCF-203ENST00000566078 SIX2Q9NPC8 291 aa33.1■■■□□ 2.89
CTCF-203ENST00000566078 CEP72Q9P209 647 aa33.1■■■□□ 2.89
CTCF-203ENST00000566078 PQBP1O60828 265 aaKnown RBP33.09■■■□□ 2.89
CTCF-203ENST00000566078 CD4P01730 458 aa33.09■■■□□ 2.89
CTCF-203ENST00000566078 POU5F1Q01860 360 aaKnown RBP33.09■■■□□ 2.89
CTCF-203ENST00000566078 LPIN1Q14693 890 aa33.09■■■□□ 2.89
CTCF-203ENST00000566078 UBXN11Q5T124 520 aa33.09■■■□□ 2.89
CTCF-203ENST00000566078 CACNA2D4Q7Z3S7 1137 aa33.09■■■□□ 2.89
CTCF-203ENST00000566078 EHBP1Q8NDI1 1231 aa33.09■■■□□ 2.89
CTCF-203ENST00000566078 ACAP3Q96P50 834 aa33.09■■■□□ 2.89
CTCF-203ENST00000566078 ERVK-5Q9HDB9 667 aa33.09■■■□□ 2.89
CTCF-203ENST00000566078 KIAA0100Q14667 2235 aaKnown RBP33.08■■■□□ 2.89
CTCF-203ENST00000566078 CD52P31358 61 aa33.08■■■□□ 2.89
CTCF-203ENST00000566078 ZBED6P86452 979 aa33.08■■■□□ 2.89
CTCF-203ENST00000566078 KLHDC7AQ5VTJ3 777 aa33.08■■■□□ 2.89
CTCF-203ENST00000566078 TWF2Q6IBS0 349 aaKnown RBP33.08■■■□□ 2.89
CTCF-203ENST00000566078 SLC39A5Q6ZMH5 540 aa33.08■■■□□ 2.89
CTCF-203ENST00000566078 C15orf39Q6ZRI6 1047 aa33.08■■■□□ 2.89
CTCF-203ENST00000566078 PANX2Q96RD6 677 aa33.08■■■□□ 2.89
CTCF-203ENST00000566078 ABHD10Q9NUJ1 306 aa33.08■■■□□ 2.89
CTCF-203ENST00000566078 TLR3O15455 904 aaKnown RBP33.07■■■□□ 2.88
CTCF-203ENST00000566078 MEFVO15553 781 aaPredicted RBP33.07■■■□□ 2.88
CTCF-203ENST00000566078 POLR2FP61218 127 aaKnown RBP33.07■■■□□ 2.88
CTCF-203ENST00000566078 TDRD10Q5VZ19 366 aaKnown RBP33.07■■■□□ 2.88
CTCF-203ENST00000566078 TRAF7Q6Q0C0 670 aa33.07■■■□□ 2.88
CTCF-203ENST00000566078 ANKLE1Q8NAG6 615 aa33.07■■■□□ 2.88
CTCF-203ENST00000566078 FBXL13Q8NEE6 735 aa33.07■■■□□ 2.88
CTCF-203ENST00000566078 ZNF397Q8NF99 534 aaPredicted RBP33.07■■■□□ 2.88
CTCF-203ENST00000566078 OR5B17Q8NGF7 314 aa33.07■■■□□ 2.88
CTCF-203ENST00000566078 LMO3Q8TAP4 145 aa33.07■■■□□ 2.88
CTCF-203ENST00000566078 EDEM3Q9BZQ6 932 aa33.07■■■□□ 2.88
CTCF-203ENST00000566078 NXF3Q9H4D5 531 aaKnown RBP33.07■■■□□ 2.88
CTCF-203ENST00000566078 NLRC4Q9NPP4 1024 aa33.07■■■□□ 2.88
CTCF-203ENST00000566078 SNTG2Q9NY99 539 aa33.07■■■□□ 2.88
CTCF-203ENST00000566078 PADI3Q9ULW8 664 aa33.07■■■□□ 2.88
CTCF-203ENST00000566078 COQ4Q9Y3A0 265 aa33.07■■■□□ 2.88
CTCF-203ENST00000566078 LACTBL1A8MY62 500 aa33.06■■■□□ 2.88
CTCF-203ENST00000566078 C4BPAP04003 597 aaKnown RBP33.06■■■□□ 2.88
CTCF-203ENST00000566078 COL6A1P12109 1028 aa33.06■■■□□ 2.88
CTCF-203ENST00000566078 CCZ1BP86790 482 aa33.06■■■□□ 2.88
CTCF-203ENST00000566078 CCZ1P86791 482 aaPredicted RBP33.06■■■□□ 2.88
CTCF-203ENST00000566078 BIRC3Q13489 604 aa33.06■■■□□ 2.88
CTCF-203ENST00000566078 ZACNQ401N2 412 aa33.06■■■□□ 2.88
CTCF-203ENST00000566078 TAS1R2Q8TE23 839 aa33.06■■■□□ 2.88
CTCF-203ENST00000566078 SQORQ9Y6N5 450 aa33.06■■■□□ 2.88
CTCF-203ENST00000566078 SCN5AQ14524 2016 aa33.06■■■□□ 2.88
CTCF-203ENST00000566078 AP3M2P53677 418 aa33.06■■■□□ 2.88
CTCF-203ENST00000566078 SLC10A6Q3KNW5 377 aa33.06■■■□□ 2.88
CTCF-203ENST00000566078 EFCAB13Q8IY85 973 aa33.06■■■□□ 2.88
CTCF-203ENST00000566078 SEMA4DQ92854 862 aa33.06■■■□□ 2.88
CTCF-203ENST00000566078 CHST12Q9NRB3 414 aa33.06■■■□□ 2.88
CTCF-203ENST00000566078 HES2Q9Y543 173 aa33.06■■■□□ 2.88
CTCF-203ENST00000566078 FHOD1Q9Y613 1164 aa33.06■■■□□ 2.88
CTCF-203ENST00000566078 UCHL3P15374 230 aa33.05■■■□□ 2.88
CTCF-203ENST00000566078 BFSP2Q13515 415 aa33.05■■■□□ 2.88
CTCF-203ENST00000566078 USP38Q8NB14 1042 aa33.05■■■□□ 2.88
CTCF-203ENST00000566078 CCDC112Q8NEF3 446 aa33.05■■■□□ 2.88
CTCF-203ENST00000566078 BAP1Q92560 729 aa33.05■■■□□ 2.88
CTCF-203ENST00000566078 DNAJC7Q99615 494 aa33.05■■■□□ 2.88
CTCF-203ENST00000566078 APOL6Q9BWW8 343 aa33.05■■■□□ 2.88
CTCF-203ENST00000566078 MTMR12Q9C0I1 747 aa33.05■■■□□ 2.88
CTCF-203ENST00000566078 NRDCO43847 1150 aa33.04■■■□□ 2.88
CTCF-203ENST00000566078 LRRN2O75325 713 aa33.04■■■□□ 2.88
CTCF-203ENST00000566078 LRRC8DQ7L1W4 858 aa33.04■■■□□ 2.88
CTCF-203ENST00000566078 OR8K1Q8NGG5 319 aa33.04■■■□□ 2.88
CTCF-203ENST00000566078 ASB7Q9H672 318 aa33.04■■■□□ 2.88
CTCF-203ENST00000566078 RAB20Q9NX57 234 aa33.04■■■□□ 2.88
CTCF-203ENST00000566078 APEX2Q9UBZ4 518 aa33.04■■■□□ 2.88
CTCF-203ENST00000566078 TMEM191BP0C7N4 346 aa33.03■■■□□ 2.88
CTCF-203ENST00000566078 SELPP16109 830 aa33.03■■■□□ 2.88
CTCF-203ENST00000566078 PIK3CAP42336 1068 aa33.03■■■□□ 2.88
CTCF-203ENST00000566078 YARSP54577 528 aaKnown RBP33.03■■■□□ 2.88
CTCF-203ENST00000566078 TFAMQ00059 246 aaKnown RBP33.03■■■□□ 2.88
CTCF-203ENST00000566078 DUOXA2Q1HG44 320 aa33.03■■■□□ 2.88
CTCF-203ENST00000566078 GJB7Q6PEY0 223 aa33.03■■■□□ 2.88
CTCF-203ENST00000566078 RRAGAQ7L523 313 aa33.03■■■□□ 2.88
CTCF-203ENST00000566078 ANKRD33Q7Z3H0 272 aa33.03■■■□□ 2.88
CTCF-203ENST00000566078 BAG1Q99933 345 aaPredicted RBP33.03■■■□□ 2.88
CTCF-203ENST00000566078 TMEM106CQ9BVX2 250 aa33.03■■■□□ 2.88
CTCF-203ENST00000566078 FBXL5Q9UKA1 691 aa33.03■■■□□ 2.88
Retrieved 100 of 20,778 RNA–protein pairs in 35.1 ms