RNA–Protein interactions for RNA: ENST00000459947.5

UBR4-208, Transcript of ubiquitin protein ligase E3 component n-recognin 4, humanhuman

TSL 2

Gene UBR4, Length 3,873 nt, Biotype retained intron, Subcellular localisation Cytoplasm, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
UBR4-208ENST00000459947 PANK2Q9BZ23 570 aa11.72□□□□□ -0.53
UBR4-208ENST00000459947 KIAA1586Q9HCI6 787 aa11.72□□□□□ -0.53
UBR4-208ENST00000459947 SSX2IPQ9Y2D8 614 aa11.72□□□□□ -0.53
UBR4-208ENST00000459947 A0A087X0B3 334 aa11.71□□□□□ -0.53
UBR4-208ENST00000459947 HNRNPDLO14979 420 aaKnown RBP11.71□□□□□ -0.53
UBR4-208ENST00000459947 NCK2O43639 380 aa11.71□□□□□ -0.53
UBR4-208ENST00000459947 PROZP22891 400 aa11.71□□□□□ -0.53
UBR4-208ENST00000459947 MATR3P43243 847 aaKnown RBP eCLIP11.71□□□□□ -0.53
UBR4-208ENST00000459947 UBE2HP62256 183 aa11.71□□□□□ -0.53
UBR4-208ENST00000459947 KRT17Q04695 432 aa11.71□□□□□ -0.53
UBR4-208ENST00000459947 RNASELQ05823 741 aaKnown RBP11.71□□□□□ -0.53
UBR4-208ENST00000459947 MCL1Q07820 350 aa11.71□□□□□ -0.53
UBR4-208ENST00000459947 SURF1Q15526 300 aa11.71□□□□□ -0.53
UBR4-208ENST00000459947 LRCH3Q96II8 777 aa11.71□□□□□ -0.53
UBR4-208ENST00000459947 CLDN3O15551 220 aa11.71□□□□□ -0.53
UBR4-208ENST00000459947 LPXNO60711 386 aa11.71□□□□□ -0.53
UBR4-208ENST00000459947 CLTAP09496 248 aa11.71□□□□□ -0.53
UBR4-208ENST00000459947 PTMSP20962 102 aa11.71□□□□□ -0.53
UBR4-208ENST00000459947 GARTP22102 1010 aa11.71□□□□□ -0.53
UBR4-208ENST00000459947 RAD51AP2Q09MP3 1159 aa11.71□□□□□ -0.53
UBR4-208ENST00000459947 KCNB1Q14721 858 aa11.71□□□□□ -0.53
UBR4-208ENST00000459947 SYCP3Q8IZU3 236 aa11.71□□□□□ -0.53
UBR4-208ENST00000459947 CPB2Q96IY4 423 aa11.71□□□□□ -0.53
UBR4-208ENST00000459947 RNF19AQ9NV58 838 aa11.71□□□□□ -0.53
UBR4-208ENST00000459947 MTMR10Q9NXD2 777 aa11.71□□□□□ -0.53
UBR4-208ENST00000459947 PARP2Q9UGN5 583 aa11.71□□□□□ -0.53
UBR4-208ENST00000459947 A0A1B0GVL5 298 aa11.71□□□□□ -0.54
UBR4-208ENST00000459947 OFD1O75665 1012 aa11.71□□□□□ -0.54
UBR4-208ENST00000459947 ZNF202O95125 648 aa11.71□□□□□ -0.54
UBR4-208ENST00000459947 GCNT3O95395 438 aa11.71□□□□□ -0.54
UBR4-208ENST00000459947 ATF7P17544 494 aaPredicted RBP11.71□□□□□ -0.54
UBR4-208ENST00000459947 PBX2P40425 430 aa11.71□□□□□ -0.54
UBR4-208ENST00000459947 NT5DC4Q86YG4 428 aa11.71□□□□□ -0.54
UBR4-208ENST00000459947 GPR65Q8IYL9 337 aa11.71□□□□□ -0.54
UBR4-208ENST00000459947 PAGE5Q96GU1 130 aa11.71□□□□□ -0.54
UBR4-208ENST00000459947 ACAP3Q96P50 834 aa11.71□□□□□ -0.54
UBR4-208ENST00000459947 COLEC11Q9BWP8 271 aa11.71□□□□□ -0.54
UBR4-208ENST00000459947 SPG21Q9NZD8 308 aa11.71□□□□□ -0.54
UBR4-208ENST00000459947 TBC1D7Q9P0N9 293 aa11.71□□□□□ -0.54
UBR4-208ENST00000459947 FNDC1Q4ZHG4 1894 aaPredicted RBP11.71□□□□□ -0.54
UBR4-208ENST00000459947 NPHP3-ACAD11A0A0J9YXS1 232 aa11.7□□□□□ -0.54
UBR4-208ENST00000459947 H3BNC9 293 aa11.7□□□□□ -0.54
UBR4-208ENST00000459947 OGTO15294 1046 aa11.7□□□□□ -0.54
UBR4-208ENST00000459947 CSDE1O75534 798 aaKnown RBP11.7□□□□□ -0.54
UBR4-208ENST00000459947 PPP1R37O75864 691 aa11.7□□□□□ -0.54
UBR4-208ENST00000459947 HS2ST1Q7LGA3 356 aa11.7□□□□□ -0.54
UBR4-208ENST00000459947 COLGALT1Q8NBJ5 622 aa11.7□□□□□ -0.54
UBR4-208ENST00000459947 SMG8Q8ND04 991 aaKnown RBP11.7□□□□□ -0.54
UBR4-208ENST00000459947 HELQQ8TDG4 1101 aa11.7□□□□□ -0.54
UBR4-208ENST00000459947 DDX27Q96GQ7 796 aaKnown RBP11.7□□□□□ -0.54
UBR4-208ENST00000459947 CDT1Q9H211 546 aa11.7□□□□□ -0.54
UBR4-208ENST00000459947 PTPRHQ9HD43 1115 aa11.7□□□□□ -0.54
UBR4-208ENST00000459947 STXBP5LQ9Y2K9 1186 aa11.7□□□□□ -0.54
UBR4-208ENST00000459947 TCHHQ07283 1943 aa11.7□□□□□ -0.54
UBR4-208ENST00000459947 PLCB3Q01970 1234 aa11.7□□□□□ -0.54
UBR4-208ENST00000459947 GPM6BQ13491 265 aa11.7□□□□□ -0.54
UBR4-208ENST00000459947 LRRC15Q8TF66 581 aa11.7□□□□□ -0.54
UBR4-208ENST00000459947 TARS2Q9BW92 718 aaKnown RBP11.7□□□□□ -0.54
UBR4-208ENST00000459947 DERAQ9Y315 318 aa11.7□□□□□ -0.54
UBR4-208ENST00000459947 MRPL42Q9Y6G3 142 aaKnown RBP11.7□□□□□ -0.54
UBR4-208ENST00000459947 STYXL1Q9Y6J8 313 aa11.7□□□□□ -0.54
UBR4-208ENST00000459947 NLRC5Q86WI3 1866 aa11.7□□□□□ -0.54
UBR4-208ENST00000459947 ARHGEF37A1IGU5 675 aa11.7□□□□□ -0.54
UBR4-208ENST00000459947 SFI1A8K8P3 1242 aa11.7□□□□□ -0.54
UBR4-208ENST00000459947 ELAVL2Q12926 359 aaKnown RBP11.7□□□□□ -0.54
UBR4-208ENST00000459947 BMT2Q1RMZ1 405 aa11.7□□□□□ -0.54
UBR4-208ENST00000459947 CLLU1OSQ5K130 101 aa11.7□□□□□ -0.54
UBR4-208ENST00000459947 KIFC3Q9BVG8 833 aa11.7□□□□□ -0.54
UBR4-208ENST00000459947 STRA6Q9BX79 667 aa11.7□□□□□ -0.54
UBR4-208ENST00000459947 B4GALT5O43286 388 aa11.69□□□□□ -0.54
UBR4-208ENST00000459947 IL18RAPO95256 599 aa11.69□□□□□ -0.54
UBR4-208ENST00000459947 ALDH7A1P49419 539 aaKnown RBP11.69□□□□□ -0.54
UBR4-208ENST00000459947 NDUFA8P51970 172 aa11.69□□□□□ -0.54
UBR4-208ENST00000459947 CREMQ03060 361 aa11.69□□□□□ -0.54
UBR4-208ENST00000459947 EPC2Q52LR7 807 aa11.69□□□□□ -0.54
UBR4-208ENST00000459947 AGMOQ6ZNB7 445 aa11.69□□□□□ -0.54
UBR4-208ENST00000459947 TSHZ2Q9NRE2 1034 aa11.69□□□□□ -0.54
UBR4-208ENST00000459947 CACNB1Q02641 598 aaPredicted RBP11.69□□□□□ -0.54
UBR4-208ENST00000459947 MYBPC2Q14324 1141 aa11.69□□□□□ -0.54
UBR4-208ENST00000459947 PDXDC1Q6P996 788 aa11.69□□□□□ -0.54
UBR4-208ENST00000459947 TAS1R3Q7RTX0 852 aa11.69□□□□□ -0.54
UBR4-208ENST00000459947 AFMP43652 599 aa11.69□□□□□ -0.54
UBR4-208ENST00000459947 PAN2Q504Q3 1202 aaKnown RBP11.69□□□□□ -0.54
UBR4-208ENST00000459947 THNSL1Q8IYQ7 743 aa11.69□□□□□ -0.54
UBR4-208ENST00000459947 ARNTL2Q8WYA1 636 aa11.69□□□□□ -0.54
UBR4-208ENST00000459947 TMEM169Q96HH4 297 aa11.69□□□□□ -0.54
UBR4-208ENST00000459947 MSTO1Q9BUK6 570 aa11.69□□□□□ -0.54
UBR4-208ENST00000459947 EIF2AQ9BY44 585 aaKnown RBP11.69□□□□□ -0.54
UBR4-208ENST00000459947 TBC1D13Q9NVG8 400 aa11.69□□□□□ -0.54
UBR4-208ENST00000459947 CEP290O15078 2479 aa11.69□□□□□ -0.54
UBR4-208ENST00000459947 FGFR1P11362 822 aa11.68□□□□□ -0.54
UBR4-208ENST00000459947 FOSL2P15408 326 aa11.68□□□□□ -0.54
UBR4-208ENST00000459947 NMT1P30419 496 aaKnown RBP11.68□□□□□ -0.54
UBR4-208ENST00000459947 PPP2R3AQ06190 1150 aa11.68□□□□□ -0.54
UBR4-208ENST00000459947 EEF1DP3Q658K8 133 aa11.68□□□□□ -0.54
UBR4-208ENST00000459947 ELMSAN1Q6PJG2 1045 aa11.68□□□□□ -0.54
UBR4-208ENST00000459947 FMR1NBQ8N0W7 255 aaPredicted RBP11.68□□□□□ -0.54
UBR4-208ENST00000459947 ZNF507Q8TCN5 953 aa11.68□□□□□ -0.54
UBR4-208ENST00000459947 GSDMAQ96QA5 445 aa11.68□□□□□ -0.54
UBR4-208ENST00000459947 FIZ1Q96SL8 496 aa11.68□□□□□ -0.54
Retrieved 100 of 20,778 RNA–protein pairs in 29.6 ms