RNA–Protein interactions for RNA: snR39B

snR39B, Transcript of C/D box small nucleolar RNA (snoRNA), yeastyeast

Gene snR39B, Length 96 nt, Biotype snoRNA.

Download Table  
RNA Protein Prediction (catRAPID) Interaction (RIP-Chip)
Gene Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score Detected Interaction
snR39BsnR39B RPL1BP0CX44 217 aaKnown RBP-0.37□□□□□ -2.47
snR39BsnR39B NSP1P14907 823 aaKnown RBP-0.37□□□□□ -2.47
snR39BsnR39B BMH1P29311 267 aaKnown RBP-0.37□□□□□ -2.47
snR39BsnR39B MRPL3P36516 390 aa-0.37□□□□□ -2.47
snR39BsnR39B AVT2P39981 480 aa-0.37□□□□□ -2.47
snR39BsnR39B ICE2P40499 491 aa-0.37□□□□□ -2.47
snR39BsnR39B PRM10P42946 383 aa-0.37□□□□□ -2.47
snR39BsnR39B SNX4P47057 423 aa-0.37□□□□□ -2.47
snR39BsnR39B SWT21P53873 357 aaPredicted RBP-0.37□□□□□ -2.47
snR39BsnR39B YPL039WQ03080 316 aa-0.37□□□□□ -2.47
snR39BsnR39B YLR012CQ07927 99 aa-0.37□□□□□ -2.47
snR39BsnR39B GPM3Q12326 303 aa-0.37□□□□□ -2.47
snR39BsnR39B GPA2P10823 449 aa-0.38□□□□□ -2.47
snR39BsnR39B RPC53P25441 422 aa-0.38□□□□□ -2.47
snR39BsnR39B IMP1P28627 190 aa-0.38□□□□□ -2.47
snR39BsnR39B SIF2P38262 535 aa-0.38□□□□□ -2.47
snR39BsnR39B SOP4P39543 234 aaPredicted RBP-0.38□□□□□ -2.47
snR39BsnR39B SNL1P40548 159 aa-0.38□□□□□ -2.47
snR39BsnR39B YFL040WP43562 540 aa-0.38□□□□□ -2.47
snR39BsnR39B PEX12Q04370 399 aa-0.38□□□□□ -2.47
snR39BsnR39B ECM18Q04623 453 aa-0.38□□□□□ -2.47
snR39BsnR39B RRG1Q12167 365 aaPredicted RBP-0.38□□□□□ -2.47
snR39BsnR39B AQY2P0CD90 149 aa-0.39□□□□□ -2.47
snR39BsnR39B DDI2P0CH63 225 aa-0.39□□□□□ -2.47
snR39BsnR39B DDI3P0CH64 225 aa-0.39□□□□□ -2.47
snR39BsnR39B PDX1P16451 410 aa-0.39□□□□□ -2.47
snR39BsnR39B CCA1P21269 546 aa-0.39□□□□□ -2.47
snR39BsnR39B IFM1P25038 676 aa-0.39□□□□□ -2.47
snR39BsnR39B PEX4P29340 183 aa-0.39□□□□□ -2.47
snR39BsnR39B GDH2P33327 1092 aaKnown RBP-0.39□□□□□ -2.47
snR39BsnR39B DRE2P36152 348 aa-0.39□□□□□ -2.47
snR39BsnR39B CAJ1P39101 391 aa-0.39□□□□□ -2.47
snR39BsnR39B KRE29P40026 464 aa-0.39□□□□□ -2.47
snR39BsnR39B YHC3P47040 408 aa-0.39□□□□□ -2.47
snR39BsnR39B ERV29P53337 310 aa-0.39□□□□□ -2.47
snR39BsnR39B MRS2Q01926 470 aa-0.39□□□□□ -2.47
snR39BsnR39B YLR446WQ06204 433 aa-0.39□□□□□ -2.47
snR39BsnR39B YPL119C-AQ3E751 87 aa-0.39□□□□□ -2.47
snR39BsnR39B SAS5Q99314 248 aa-0.39□□□□□ -2.47
snR39BsnR39B CDC31P06704 161 aaKnown RBP-0.4□□□□□ -2.47
snR39BsnR39B RAD3P06839 778 aa-0.4□□□□□ -2.47
snR39BsnR39B VMA2P16140 517 aaKnown RBP-0.4□□□□□ -2.47
snR39BsnR39B PPH21P23594 369 aa-0.4□□□□□ -2.47
snR39BsnR39B MEI5P32489 222 aa-0.4□□□□□ -2.47
snR39BsnR39B DOG1P38774 246 aa-0.4□□□□□ -2.47
snR39BsnR39B YHR122WP38829 231 aa-0.4□□□□□ -2.47
snR39BsnR39B VAB2P40003 282 aa-0.4□□□□□ -2.47
snR39BsnR39B YJR079WP47126 109 aa-0.4□□□□□ -2.47
snR39BsnR39B MPA43P53583 542 aaPredicted RBP-0.4□□□□□ -2.47
snR39BsnR39B CYT2Q00873 224 aa-0.4□□□□□ -2.47
snR39BsnR39B RMT2Q03305 412 aa-0.4□□□□□ -2.47
snR39BsnR39B LAG2Q92325 660 aa-0.4□□□□□ -2.47
snR39BsnR39B MAS1P10507 462 aa-0.41□□□□□ -2.48
snR39BsnR39B ERD1P16151 362 aa-0.41□□□□□ -2.48
snR39BsnR39B YHR022CP38763 256 aa-0.41□□□□□ -2.48
snR39BsnR39B YHI9P38765 294 aa-0.41□□□□□ -2.48
snR39BsnR39B YEL067CP39978 195 aa-0.41□□□□□ -2.48
snR39BsnR39B SHQ1P40486 507 aaPredicted RBP-0.41□□□□□ -2.48
snR39BsnR39B AVT7P40501 490 aa-0.41□□□□□ -2.48
snR39BsnR39B EFM4P40516 257 aa-0.41□□□□□ -2.48
snR39BsnR39B SMD3P43321 101 aaKnown RBP-0.41□□□□□ -2.48
snR39BsnR39B TAD2P47058 250 aa-0.41□□□□□ -2.48
snR39BsnR39B MRPS8Q03799 155 aa-0.41□□□□□ -2.48
snR39BsnR39B PEX10Q05568 337 aa-0.41□□□□□ -2.48
snR39BsnR39B MEU1Q07938 337 aaKnown RBP RIP-Chip data-0.41□□□□□ -2.48not detected
snR39BsnR39B FKS1P38631 1876 aaKnown RBP-0.41□□□□□ -2.48
snR39BsnR39B RBK1P25332 333 aa-0.42□□□□□ -2.48
snR39BsnR39B MDL1P33310 695 aa-0.42□□□□□ -2.48
snR39BsnR39B YMR134WP40207 237 aa-0.42□□□□□ -2.48
snR39BsnR39B PXR1P53335 271 aaPredicted RBP-0.42□□□□□ -2.48
snR39BsnR39B RSM10Q03201 203 aa-0.42□□□□□ -2.48
snR39BsnR39B TSR2Q06672 205 aaKnown RBP-0.42□□□□□ -2.48
snR39BsnR39B SPE3Q12074 293 aaKnown RBP-0.42□□□□□ -2.48
snR39BsnR39B FUR1P18562 216 aaKnown RBP-0.43□□□□□ -2.48
snR39BsnR39B CIN8P27895 1000 aa-0.43□□□□□ -2.48
snR39BsnR39B PHO89P38361 574 aa-0.43□□□□□ -2.48
snR39BsnR39B MDM34P53083 459 aa-0.43□□□□□ -2.48
snR39BsnR39B ASI3P53983 676 aa-0.43□□□□□ -2.48
snR39BsnR39B UBC7Q02159 165 aa-0.43□□□□□ -2.48
snR39BsnR39B YFH1Q07540 174 aa-0.43□□□□□ -2.48
snR39BsnR39B GEP5Q12393 293 aa-0.43□□□□□ -2.48
snR39BsnR39B HSP82P02829 709 aaKnown RBP-0.44□□□□□ -2.48
snR39BsnR39B COS2P0CX12 379 aa-0.44□□□□□ -2.48
snR39BsnR39B COS3P0CX13 379 aa-0.44□□□□□ -2.48
snR39BsnR39B THR4P16120 514 aaKnown RBP-0.44□□□□□ -2.48
snR39BsnR39B DPB2P24482 689 aaPredicted RBP-0.44□□□□□ -2.48
snR39BsnR39B ERG2P32352 222 aa-0.44□□□□□ -2.48
snR39BsnR39B COT1P32798 439 aa-0.44□□□□□ -2.48
snR39BsnR39B IMP3P32899 183 aaPredicted RBP-0.44□□□□□ -2.48
snR39BsnR39B PXA2P34230 853 aa-0.44□□□□□ -2.48
snR39BsnR39B MCH2P36032 473 aa-0.44□□□□□ -2.48
snR39BsnR39B POP8P38208 133 aa-0.44□□□□□ -2.48
snR39BsnR39B PHO88P38264 188 aaPredicted RBP-0.44□□□□□ -2.48
snR39BsnR39B YPC1P38298 316 aa-0.44□□□□□ -2.48
snR39BsnR39B ARN2P38724 620 aa-0.44□□□□□ -2.48
snR39BsnR39B BUD27P43573 796 aaKnown RBP RIP-Chip data-0.44□□□□□ -2.48not detected
snR39BsnR39B YGR016WP53209 190 aa-0.44□□□□□ -2.48
snR39BsnR39B DBP6P53734 629 aaKnown RBP-0.44□□□□□ -2.48
snR39BsnR39B SUB1P54000 292 aaKnown RBP-0.44□□□□□ -2.48
snR39BsnR39B UTP6Q02354 440 aaKnown RBP-0.44□□□□□ -2.48
Retrieved 100 of 5,963 RNA–protein pairs in 115.8 ms