RNA–Protein interactions for RNA: YJL140W

RPB4, Transcript of RNA polymerase II subunit B32, yeast

Gene RPB4, Length 666 nt, Biotype protein coding.

RNA		Protein				Prediction (catRAPID)		Interaction (RIP-Chip)
Gene	Ensembl Transcript ID	Gene	UniProt Accession	Length	Protein Status	Prediction Score	Prediction z-Score	Detected Interaction
RPB4	YJL140W	GPG1	P53130	126 aa		4.6	□□□□□ -1.67
RPB4	YJL140W	NQM1	P53228	333 aa	Predicted RBP	4.6	□□□□□ -1.67
RPB4	YJL140W	COS1	P53822	381 aa		4.6	□□□□□ -1.67
RPB4	YJL140W	RRP17	Q04031	235 aa	Predicted RBP	4.6	□□□□□ -1.67
RPB4	YJL140W	YMR087W	Q04299	284 aa		4.6	□□□□□ -1.67
RPB4	YJL140W	YLR446W	Q06204	433 aa		4.6	□□□□□ -1.67
RPB4	YJL140W	CRT10	Q08226	957 aa		4.6	□□□□□ -1.67
RPB4	YJL140W	YDL211C	Q12121	372 aa		4.6	□□□□□ -1.67
RPB4	YJL140W	SPC3	Q12133	184 aa		4.6	□□□□□ -1.67
RPB4	YJL140W	YOL162W	P0CF19	215 aa		4.59	□□□□□ -1.67
RPB4	YJL140W	KGD1	P20967	1014 aa	Known RBP	4.59	□□□□□ -1.67
RPB4	YJL140W	VPS51	P36116	164 aa		4.59	□□□□□ -1.67
RPB4	YJL140W	GPX2	P38143	162 aa		4.59	□□□□□ -1.67
RPB4	YJL140W	GRE3	P38715	327 aa	Known RBP RIP-Chip data	4.59	□□□□□ -1.67	not detected
RPB4	YJL140W	ANS1	P38832	159 aa		4.59	□□□□□ -1.67
RPB4	YJL140W	YEL068C	P39977	110 aa		4.59	□□□□□ -1.67
RPB4	YJL140W	JLP2	P40206	208 aa		4.59	□□□□□ -1.67
RPB4	YJL140W	CIN1	P40987	1014 aa		4.59	□□□□□ -1.67
RPB4	YJL140W	BAT2	P47176	376 aa	Known RBP	4.59	□□□□□ -1.67
RPB4	YJL140W	AAD10	P47182	288 aa		4.59	□□□□□ -1.67
RPB4	YJL140W	BPL1	P48445	690 aa	Predicted RBP	4.59	□□□□□ -1.67
RPB4	YJL140W	DBP6	P53734	629 aa	Known RBP	4.59	□□□□□ -1.67
RPB4	YJL140W	ERB1	Q04660	807 aa	Known RBP	4.59	□□□□□ -1.67
RPB4	YJL140W	GAL83	Q04739	417 aa		4.59	□□□□□ -1.67
RPB4	YJL140W	RNH1	Q04740	348 aa		4.59	□□□□□ -1.67
RPB4	YJL140W	YOR097C	Q12274	175 aa	Predicted RBP	4.59	□□□□□ -1.67
RPB4	YJL140W	ERD1	P16151	362 aa		4.58	□□□□□ -1.68
RPB4	YJL140W	GPI12	P23797	304 aa		4.58	□□□□□ -1.68
RPB4	YJL140W	STP22	P25604	385 aa		4.58	□□□□□ -1.68
RPB4	YJL140W	ASF2	P32448	525 aa	Predicted RBP	4.58	□□□□□ -1.68
RPB4	YJL140W	HIR2	P32480	875 aa		4.58	□□□□□ -1.68
RPB4	YJL140W	YOR062C	P36025	268 aa		4.58	□□□□□ -1.68
RPB4	YJL140W	SNU114	P36048	1008 aa	Known RBP	4.58	□□□□□ -1.68
RPB4	YJL140W	YHR035W	P38769	630 aa		4.58	□□□□□ -1.68
RPB4	YJL140W	PEX18	P38855	283 aa		4.58	□□□□□ -1.68
RPB4	YJL140W	ALP1	P38971	573 aa		4.58	□□□□□ -1.68
RPB4	YJL140W	YJL193W	P39542	402 aa		4.58	□□□□□ -1.68
RPB4	YJL140W	AIM10	P39965	576 aa	Known RBP	4.58	□□□□□ -1.68
RPB4	YJL140W	AIM20	P40451	204 aa		4.58	□□□□□ -1.68
RPB4	YJL140W	IRC7	P43623	340 aa		4.58	□□□□□ -1.68
RPB4	YJL140W	ALB1	P47019	175 aa	Predicted RBP	4.58	□□□□□ -1.68
RPB4	YJL140W	APS3	P47064	194 aa		4.58	□□□□□ -1.68
RPB4	YJL140W	ATP23	P53722	227 aa		4.58	□□□□□ -1.68
RPB4	YJL140W	ASI1	P54074	624 aa		4.58	□□□□□ -1.68
RPB4	YJL140W	CGI121	Q03705	181 aa	Known RBP	4.58	□□□□□ -1.68
RPB4	YJL140W	OST6	Q03723	332 aa		4.58	□□□□□ -1.68
RPB4	YJL140W	FIN1	Q03898	291 aa		4.58	□□□□□ -1.68
RPB4	YJL140W	PLM2	Q04383	521 aa		4.58	□□□□□ -1.68
RPB4	YJL140W	SMA2	Q04658	369 aa		4.58	□□□□□ -1.68
RPB4	YJL140W	YPR091C	Q06833	770 aa		4.58	□□□□□ -1.68
RPB4	YJL140W	NGL1	Q08213	363 aa	Known RBP	4.58	□□□□□ -1.68
RPB4	YJL140W	UIP4	Q08926	304 aa		4.58	□□□□□ -1.68
RPB4	YJL140W	RKM1	Q08961	583 aa	Predicted RBP	4.58	□□□□□ -1.68
RPB4	YJL140W	NOP56	Q12460	504 aa	Known RBP RIP-Chip data	4.58	□□□□□ -1.68	not detected
RPB4	YJL140W	YFR010W-A	P0C5N0	62 aa		4.57	□□□□□ -1.68
RPB4	YJL140W	BAR1	P12630	587 aa		4.57	□□□□□ -1.68
RPB4	YJL140W	ERG8	P24521	451 aa		4.57	□□□□□ -1.68
RPB4	YJL140W	MDL1	P33310	695 aa		4.57	□□□□□ -1.68
RPB4	YJL140W	RIB7	P33312	244 aa		4.57	□□□□□ -1.68
RPB4	YJL140W	RPS20	P38701	121 aa	Known RBP	4.57	□□□□□ -1.68
RPB4	YJL140W	MDM31	P38880	579 aa		4.57	□□□□□ -1.68
RPB4	YJL140W	PCL6	P40038	420 aa		4.57	□□□□□ -1.68
RPB4	YJL140W	PKP1	P40530	394 aa		4.57	□□□□□ -1.68
RPB4	YJL140W	SMK1	P41808	388 aa		4.57	□□□□□ -1.68
RPB4	YJL140W	PAM16	P42949	149 aa		4.57	□□□□□ -1.68
RPB4	YJL140W	YDL183C	P48569	320 aa		4.57	□□□□□ -1.68
RPB4	YJL140W	PEF1	P53238	335 aa		4.57	□□□□□ -1.68
RPB4	YJL140W	RBG2	P53295	368 aa	Known RBP	4.57	□□□□□ -1.68
RPB4	YJL140W	MKC7	P53379	596 aa		4.57	□□□□□ -1.68
RPB4	YJL140W	YKR005C	Q02203	525 aa		4.57	□□□□□ -1.68
RPB4	YJL140W	YLR173W	Q06247	608 aa		4.57	□□□□□ -1.68
RPB4	YJL140W	YLR352W	Q06479	807 aa		4.57	□□□□□ -1.68
RPB4	YJL140W	YOR365C	Q08844	703 aa		4.57	□□□□□ -1.68
RPB4	YJL140W	RCN2	Q12044	265 aa		4.57	□□□□□ -1.68
RPB4	YJL140W	MED2	Q12124	431 aa		4.57	□□□□□ -1.68
RPB4	YJL140W	DCP1	Q12517	231 aa	Predicted RBP	4.57	□□□□□ -1.68
RPB4	YJL140W	YDL007C-A	Q2V2Q0	85 aa		4.57	□□□□□ -1.68
RPB4	YJL140W	KIN28	P06242	306 aa		4.56	□□□□□ -1.68
RPB4	YJL140W	NFT1	P0CE68	1218 aa		4.56	□□□□□ -1.68
RPB4	YJL140W	RPL20A	P0CX23	172 aa	Known RBP	4.56	□□□□□ -1.68
RPB4	YJL140W	RPL20B	P0CX24	172 aa	Predicted RBP	4.56	□□□□□ -1.68
RPB4	YJL140W	SEC12	P11655	471 aa		4.56	□□□□□ -1.68
RPB4	YJL140W	ERD2	P18414	219 aa		4.56	□□□□□ -1.68
RPB4	YJL140W	GIT1	P25346	518 aa		4.56	□□□□□ -1.68
RPB4	YJL140W	PUP2	P32379	260 aa		4.56	□□□□□ -1.68
RPB4	YJL140W	ZRT3	P34240	503 aa		4.56	□□□□□ -1.68
RPB4	YJL140W	SHE1	P38200	338 aa		4.56	□□□□□ -1.68
RPB4	YJL140W	YHK8	P38776	514 aa		4.56	□□□□□ -1.68
RPB4	YJL140W	NVJ1	P38881	321 aa		4.56	□□□□□ -1.68
RPB4	YJL140W	CHL4	P38907	458 aa		4.56	□□□□□ -1.68
RPB4	YJL140W	DDI1	P40087	428 aa		4.56	□□□□□ -1.68
RPB4	YJL140W	YNL208W	P40159	199 aa	Known RBP	4.56	□□□□□ -1.68
RPB4	YJL140W	YJL218W	P40892	196 aa	Known RBP	4.56	□□□□□ -1.68
RPB4	YJL140W	LSG1	P53145	640 aa	Known RBP	4.56	□□□□□ -1.68
RPB4	YJL140W	MPA43	P53583	542 aa	Predicted RBP	4.56	□□□□□ -1.68
RPB4	YJL140W	PGA1	P53896	198 aa		4.56	□□□□□ -1.68
RPB4	YJL140W	YLR460C	P54007	376 aa		4.56	□□□□□ -1.68
RPB4	YJL140W	CIK1	Q01649	594 aa		4.56	□□□□□ -1.68
RPB4	YJL140W	MIX14	Q04341	121 aa		4.56	□□□□□ -1.68
RPB4	YJL140W	YPR172W	Q06608	200 aa		4.56	□□□□□ -1.68

Retrieved 100 of 5,963 RNA–protein pairs in 66.1 ms