RNA–Protein interactions for RNA: YFL040W

YFL040W, Transcript of Putative transporter, yeast

Gene YFL040W, Length 1,623 nt, Biotype protein coding.

RNA		Protein				Prediction (catRAPID)		Interaction (RIP-Chip)
Gene	Ensembl Transcript ID	Gene	UniProt Accession	Length	Protein Status	Prediction Score	Prediction z-Score	Detected Interaction
YFL040W	YFL040W	WTM1	Q12363	437 aa	Known RBP	3.32	□□□□□ -1.88
YFL040W	YFL040W	IZH2	Q12442	317 aa		3.32	□□□□□ -1.88
YFL040W	YFL040W	UTP10	P42945	1769 aa	Known RBP	3.31	□□□□□ -1.88
YFL040W	YFL040W	PRB1	P09232	635 aa		3.31	□□□□□ -1.88
YFL040W	YFL040W	RPC37	P36121	282 aa		3.31	□□□□□ -1.88
YFL040W	YFL040W	PEX22	P39718	180 aa		3.31	□□□□□ -1.88
YFL040W	YFL040W	MOB2	P43563	287 aa		3.31	□□□□□ -1.88
YFL040W	YFL040W	BIR1	P47134	954 aa		3.31	□□□□□ -1.88
YFL040W	YFL040W	VAC7	P53950	1165 aa		3.31	□□□□□ -1.88
YFL040W	YFL040W	YPL077C	Q02831	240 aa		3.31	□□□□□ -1.88
YFL040W	YFL040W	CWC21	Q03375	135 aa	Known RBP	3.31	□□□□□ -1.88
YFL040W	YFL040W	VPS60	Q03390	229 aa		3.31	□□□□□ -1.88
YFL040W	YFL040W	YMR010W	Q03687	405 aa		3.31	□□□□□ -1.88
YFL040W	YFL040W	YDL144C	Q07589	356 aa		3.31	□□□□□ -1.88
YFL040W	YFL040W	POM33	Q12164	279 aa		3.31	□□□□□ -1.88
YFL040W	YFL040W	JID1	Q12350	301 aa		3.31	□□□□□ -1.88
YFL040W	YFL040W	ATG31	Q12421	196 aa		3.31	□□□□□ -1.88
YFL040W	YFL040W	NAG1	Q8TGN9	163 aa		3.31	□□□□□ -1.88
YFL040W	YFL040W	ARG80	P07249	177 aa		3.3	□□□□□ -1.88
YFL040W	YFL040W	RRT12	P25381	491 aa		3.3	□□□□□ -1.88
YFL040W	YFL040W	DEP1	P31385	405 aa		3.3	□□□□□ -1.88
YFL040W	YFL040W	MCH2	P36032	473 aa		3.3	□□□□□ -1.88
YFL040W	YFL040W	MED8	P38304	223 aa		3.3	□□□□□ -1.88
YFL040W	YFL040W	DED81	P38707	554 aa	Known RBP	3.3	□□□□□ -1.88
YFL040W	YFL040W	BIG1	P38813	335 aa		3.3	□□□□□ -1.88
YFL040W	YFL040W	SOP4	P39543	234 aa	Predicted RBP	3.3	□□□□□ -1.88
YFL040W	YFL040W	AIM23	P47015	356 aa		3.3	□□□□□ -1.88
YFL040W	YFL040W	UBC13	P52490	153 aa		3.3	□□□□□ -1.88
YFL040W	YFL040W	TPC1	P53257	314 aa		3.3	□□□□□ -1.88
YFL040W	YFL040W	CLD1	P53264	445 aa		3.3	□□□□□ -1.88
YFL040W	YFL040W	VBA1	Q04301	562 aa		3.3	□□□□□ -1.88
YFL040W	YFL040W	PLP2	Q12017	286 aa		3.3	□□□□□ -1.88
YFL040W	YFL040W	UTP23	Q12339	254 aa	Known RBP	3.3	□□□□□ -1.88
YFL040W	YFL040W	YBL111C	Q3E7Y5	667 aa		3.3	□□□□□ -1.88
YFL040W	YFL040W	RAD3	P06839	778 aa		3.3	□□□□□ -1.88
YFL040W	YFL040W	MET16	P18408	261 aa	Predicted RBP	3.3	□□□□□ -1.88
YFL040W	YFL040W	RPL16B	P26785	198 aa	Known RBP	3.3	□□□□□ -1.88
YFL040W	YFL040W	NTG1	P31378	399 aa		3.3	□□□□□ -1.88
YFL040W	YFL040W	YKL063C	P35725	167 aa		3.3	□□□□□ -1.88
YFL040W	YFL040W	BAT1	P38891	393 aa	Known RBP	3.3	□□□□□ -1.88
YFL040W	YFL040W	CHL4	P38907	458 aa		3.3	□□□□□ -1.88
YFL040W	YFL040W	PET8	P38921	284 aa		3.3	□□□□□ -1.88
YFL040W	YFL040W	YNL208W	P40159	199 aa	Known RBP	3.3	□□□□□ -1.88
YFL040W	YFL040W	YFR057W	P43625	151 aa		3.3	□□□□□ -1.88
YFL040W	YFL040W	VHT1	P53241	593 aa		3.3	□□□□□ -1.88
YFL040W	YFL040W	FSH2	Q05015	223 aa		3.3	□□□□□ -1.88
YFL040W	YFL040W	TAZ1	Q06510	381 aa		3.3	□□□□□ -1.88
YFL040W	YFL040W	YOR376W	Q08900	122 aa		3.3	□□□□□ -1.88
YFL040W	YFL040W	SFM1	Q12314	213 aa		3.3	□□□□□ -1.88
YFL040W	YFL040W	IZH4	Q99393	312 aa		3.3	□□□□□ -1.88
YFL040W	YFL040W	CTA1	P15202	515 aa		3.29	□□□□□ -1.88
YFL040W	YFL040W	NUP2	P32499	720 aa		3.29	□□□□□ -1.88
YFL040W	YFL040W	RCK1	P38622	512 aa		3.29	□□□□□ -1.88
YFL040W	YFL040W	LSM12	P38828	187 aa	Known RBP	3.29	□□□□□ -1.88
YFL040W	YFL040W	AIM10	P39965	576 aa	Known RBP	3.29	□□□□□ -1.88
YFL040W	YFL040W	RTR1	P40084	226 aa	Predicted RBP	3.29	□□□□□ -1.88
YFL040W	YFL040W	YER186C	P40101	306 aa		3.29	□□□□□ -1.88
YFL040W	YFL040W	CDH1	P53197	566 aa		3.29	□□□□□ -1.88
YFL040W	YFL040W	YNL040W	P53960	456 aa	Predicted RBP	3.29	□□□□□ -1.88
YFL040W	YFL040W	PRP38	Q00723	242 aa	Predicted RBP	3.29	□□□□□ -1.88
YFL040W	YFL040W	OST6	Q03723	332 aa		3.29	□□□□□ -1.88
YFL040W	YFL040W	FAR10	Q06001	478 aa		3.29	□□□□□ -1.88
YFL040W	YFL040W	GAS2	Q06135	555 aa		3.29	□□□□□ -1.88
YFL040W	YFL040W	MHR1	Q06630	226 aa		3.29	□□□□□ -1.88
YFL040W	YFL040W	MRX9	Q07349	420 aa	Known RBP	3.29	□□□□□ -1.88
YFL040W	YFL040W	ERD1	P16151	362 aa		3.28	□□□□□ -1.88
YFL040W	YFL040W	MRPL6	P32904	214 aa		3.28	□□□□□ -1.88
YFL040W	YFL040W	KTI12	P34253	313 aa	Known RBP	3.28	□□□□□ -1.88
YFL040W	YFL040W	YER085C	P40058	173 aa		3.28	□□□□□ -1.88
YFL040W	YFL040W	FMC1	P40491	155 aa		3.28	□□□□□ -1.88
YFL040W	YFL040W	GCN20	P43535	752 aa	Known RBP	3.28	□□□□□ -1.88
YFL040W	YFL040W	SWC4	P53201	476 aa		3.28	□□□□□ -1.88
YFL040W	YFL040W	CPD1	P53314	239 aa		3.28	□□□□□ -1.88
YFL040W	YFL040W	SKI8	Q02793	397 aa	Predicted RBP	3.28	□□□□□ -1.88
YFL040W	YFL040W	HMS1	Q12398	434 aa		3.28	□□□□□ -1.88
YFL040W	YFL040W	PRM4	Q12498	284 aa		3.28	□□□□□ -1.88
YFL040W	YFL040W	ILV1	P00927	576 aa	Known RBP	3.27	□□□□□ -1.89
YFL040W	YFL040W	VPS1	P21576	704 aa	Known RBP	3.27	□□□□□ -1.89
YFL040W	YFL040W	GIT1	P25346	518 aa		3.27	□□□□□ -1.89
YFL040W	YFL040W	DOA4	P32571	926 aa		3.27	□□□□□ -1.89
YFL040W	YFL040W	SUA5	P32579	426 aa		3.27	□□□□□ -1.89
YFL040W	YFL040W	YKT6	P36015	200 aa	Known RBP	3.27	□□□□□ -1.89
YFL040W	YFL040W	PRS4	P38063	326 aa	Predicted RBP	3.27	□□□□□ -1.89
YFL040W	YFL040W	YBR062C	P38239	180 aa		3.27	□□□□□ -1.89
YFL040W	YFL040W	TDA11	P38854	504 aa		3.27	□□□□□ -1.89
YFL040W	YFL040W	UTP18	P40362	594 aa	Predicted RBP	3.27	□□□□□ -1.89
YFL040W	YFL040W	KTR6	P54070	446 aa		3.27	□□□□□ -1.89
YFL040W	YFL040W	YLR152C	P54072	576 aa		3.27	□□□□□ -1.89
YFL040W	YFL040W	ADH6	Q04894	360 aa	Known RBP	3.27	□□□□□ -1.89
YFL040W	YFL040W	SDO1	Q07953	250 aa	Known RBP	3.27	□□□□□ -1.89
YFL040W	YFL040W	LYS2	P07702	1392 aa		3.27	□□□□□ -1.89
YFL040W	YFL040W	TFS1	P14306	219 aa		3.26	□□□□□ -1.89
YFL040W	YFL040W	POF1	P25576	258 aa		3.26	□□□□□ -1.89
YFL040W	YFL040W	YCR016W	P25617	290 aa	Known RBP	3.26	□□□□□ -1.89
YFL040W	YFL040W	PRR1	P28708	518 aa		3.26	□□□□□ -1.89
YFL040W	YFL040W	SPT4	P32914	102 aa	Predicted RBP	3.26	□□□□□ -1.89
YFL040W	YFL040W	CBF5	P33322	483 aa	Known RBP RIP-Chip data	3.26	□□□□□ -1.89	not detected
YFL040W	YFL040W	PFS1	P38872	237 aa		3.26	□□□□□ -1.89
YFL040W	YFL040W	MIG3	P39943	394 aa		3.26	□□□□□ -1.89
YFL040W	YFL040W	OXA1	P39952	402 aa		3.26	□□□□□ -1.89

Retrieved 100 of 5,963 RNA–protein pairs in 20.5 ms