RNA–Protein interactions for RNA: YMR046C

YMR046C, Transcript of Retrotransposon TYA Gag gene co-transcribed with TYB Pol, yeast

Gene YMR046C, Length 1,323 nt, Biotype protein coding.

RNA		Protein				Prediction (catRAPID)		Interaction (RIP-Chip)
Gene	Ensembl Transcript ID	Gene	UniProt Accession	Length	Protein Status	Prediction Score	Prediction z-Score	Detected Interaction
YMR046C	YMR046C	NKP2	Q06162	153 aa		2.63	□□□□□ -1.99
YMR046C	YMR046C	YLR177W	Q06251	628 aa		2.63	□□□□□ -1.99
YMR046C	YMR046C	SLF1	Q12034	447 aa	Known RBP	2.63	□□□□□ -1.99
YMR046C	YMR046C	YPR1	Q12458	312 aa		2.63	□□□□□ -1.99
YMR046C	YMR046C	FOL3	Q12676	427 aa	Predicted RBP	2.63	□□□□□ -1.99
YMR046C	YMR046C	PUT4	P15380	627 aa		2.62	□□□□□ -1.99
YMR046C	YMR046C	UGA1	P17649	471 aa		2.62	□□□□□ -1.99
YMR046C	YMR046C	ICL1	P28240	557 aa	Predicted RBP	2.62	□□□□□ -1.99
YMR046C	YMR046C	SOL2	P37262	315 aa		2.62	□□□□□ -1.99
YMR046C	YMR046C	SHE1	P38200	338 aa		2.62	□□□□□ -1.99
YMR046C	YMR046C	SMF2	P38778	549 aa		2.62	□□□□□ -1.99
YMR046C	YMR046C	SHC1	P39000	512 aa		2.62	□□□□□ -1.99
YMR046C	YMR046C	YFL040W	P43562	540 aa		2.62	□□□□□ -1.99
YMR046C	YMR046C	YGR015C	P53208	328 aa		2.62	□□□□□ -1.99
YMR046C	YMR046C	APC4	Q04601	652 aa		2.62	□□□□□ -1.99
YMR046C	YMR046C	RPN8	Q08723	338 aa	Known RBP	2.62	□□□□□ -1.99
YMR046C	YMR046C	SAL1	D6W196	494 aa		2.61	□□□□□ -1.99
YMR046C	YMR046C	REP1	P03871	373 aa		2.61	□□□□□ -1.99
YMR046C	YMR046C	GAL7	P08431	366 aa		2.61	□□□□□ -1.99
YMR046C	YMR046C	RPL5	P26321	297 aa	Known RBP	2.61	□□□□□ -1.99
YMR046C	YMR046C	MEI5	P32489	222 aa		2.61	□□□□□ -1.99
YMR046C	YMR046C	RPC25	P35718	212 aa		2.61	□□□□□ -1.99
YMR046C	YMR046C	FHL1	P39521	936 aa		2.61	□□□□□ -1.99
YMR046C	YMR046C	RTT105	P40063	208 aa		2.61	□□□□□ -1.99
YMR046C	YMR046C	YFH7	P43591	353 aa		2.61	□□□□□ -1.99
YMR046C	YMR046C	GCD14	P46959	383 aa	Predicted RBP	2.61	□□□□□ -1.99
YMR046C	YMR046C	PMT4	P46971	762 aa		2.61	□□□□□ -1.99
YMR046C	YMR046C	YJR054W	P47114	497 aa		2.61	□□□□□ -1.99
YMR046C	YMR046C	YGL262W	P53054	175 aa		2.61	□□□□□ -1.99
YMR046C	YMR046C	PNC1	P53184	216 aa	Known RBP	2.61	□□□□□ -1.99
YMR046C	YMR046C	CDH1	P53197	566 aa		2.61	□□□□□ -1.99
YMR046C	YMR046C	OKP1	P53298	406 aa		2.61	□□□□□ -1.99
YMR046C	YMR046C	YDR115W	Q04598	105 aa		2.61	□□□□□ -1.99
YMR046C	YMR046C	ERV41	Q04651	352 aa		2.61	□□□□□ -1.99
YMR046C	YMR046C	YLR413W	Q06689	675 aa		2.61	□□□□□ -1.99
YMR046C	YMR046C	YLR012C	Q07927	99 aa		2.61	□□□□□ -1.99
YMR046C	YMR046C	RDL2	Q08742	149 aa	Known RBP	2.61	□□□□□ -1.99
YMR046C	YMR046C	SAM4	Q08985	325 aa	Known RBP	2.61	□□□□□ -1.99
YMR046C	YMR046C	TAF10	Q12030	206 aa		2.61	□□□□□ -1.99
YMR046C	YMR046C	ADH1	P00330	348 aa	Known RBP	2.6	□□□□□ -1.99
YMR046C	YMR046C	RPS14A	P06367	137 aa	Known RBP	2.6	□□□□□ -1.99
YMR046C	YMR046C	CTA1	P15202	515 aa		2.6	□□□□□ -1.99
YMR046C	YMR046C	OM45	P16547	393 aa		2.6	□□□□□ -1.99
YMR046C	YMR046C	URA10	P30402	227 aa		2.6	□□□□□ -1.99
YMR046C	YMR046C	RAD23	P32628	398 aa	Known RBP	2.6	□□□□□ -1.99
YMR046C	YMR046C	DTR1	P38125	572 aa		2.6	□□□□□ -1.99
YMR046C	YMR046C	SHE3	P38272	425 aa	Known RBP	2.6	□□□□□ -1.99
YMR046C	YMR046C	YHR035W	P38769	630 aa		2.6	□□□□□ -1.99
YMR046C	YMR046C	CHL4	P38907	458 aa		2.6	□□□□□ -1.99
YMR046C	YMR046C	VPS45	P38932	577 aa		2.6	□□□□□ -1.99
YMR046C	YMR046C	RPS14B	P39516	138 aa	Known RBP	2.6	□□□□□ -1.99
YMR046C	YMR046C	COX16	P47081	118 aa		2.6	□□□□□ -1.99
YMR046C	YMR046C	YGR018C	P53211	109 aa		2.6	□□□□□ -1.99
YMR046C	YMR046C	RNH201	P53942	307 aa		2.6	□□□□□ -1.99
YMR046C	YMR046C	KTR6	P54070	446 aa		2.6	□□□□□ -1.99
YMR046C	YMR046C	IRC4	Q03036	179 aa		2.6	□□□□□ -1.99
YMR046C	YMR046C	SCS7	Q03529	384 aa		2.6	□□□□□ -1.99
YMR046C	YMR046C	VTI1	Q04338	217 aa		2.6	□□□□□ -1.99
YMR046C	YMR046C	INM2	Q05533	292 aa		2.6	□□□□□ -1.99
YMR046C	YMR046C	FAR10	Q06001	478 aa		2.6	□□□□□ -1.99
YMR046C	YMR046C	BCP1	Q06338	283 aa		2.6	□□□□□ -1.99
YMR046C	YMR046C	LDB17	Q12342	491 aa		2.6	□□□□□ -1.99
YMR046C	YMR046C	PRM4	Q12498	284 aa		2.6	□□□□□ -1.99
YMR046C	YMR046C	CBP6	P07253	162 aa	Predicted RBP	2.59	□□□□□ -2
YMR046C	YMR046C	PPQ1	P32945	549 aa		2.59	□□□□□ -2
YMR046C	YMR046C	SKI2	P35207	1287 aa	Known RBP RIP-Chip data	2.59	□□□□□ -2	not detected
YMR046C	YMR046C	MID2	P36027	376 aa		2.59	□□□□□ -2
YMR046C	YMR046C	YKL071W	P36086	256 aa		2.59	□□□□□ -2
YMR046C	YMR046C	MRPL27	P36526	146 aa	Predicted RBP	2.59	□□□□□ -2
YMR046C	YMR046C	YBR241C	P38142	488 aa		2.59	□□□□□ -2
YMR046C	YMR046C	PEX18	P38855	283 aa		2.59	□□□□□ -2
YMR046C	YMR046C	SEO1	P39709	593 aa		2.59	□□□□□ -2
YMR046C	YMR046C	PEX22	P39718	180 aa		2.59	□□□□□ -2
YMR046C	YMR046C	GTO1	P48239	356 aa		2.59	□□□□□ -2
YMR046C	YMR046C	BIO3	P50277	480 aa		2.59	□□□□□ -2
YMR046C	YMR046C	BIO4	P53630	237 aa		2.59	□□□□□ -2
YMR046C	YMR046C	TPS1	Q00764	495 aa	Known RBP	2.59	□□□□□ -2
YMR046C	YMR046C	TRM44	Q02648	567 aa	Known RBP	2.59	□□□□□ -2
YMR046C	YMR046C	VHS1	Q03785	461 aa		2.59	□□□□□ -2
YMR046C	YMR046C	MCH1	Q07376	486 aa		2.59	□□□□□ -2
YMR046C	YMR046C	DTD1	Q07648	150 aa	Known RBP	2.59	□□□□□ -2
YMR046C	YMR046C	YOR376W	Q08900	122 aa		2.59	□□□□□ -2
YMR046C	YMR046C	SIA1	Q12212	622 aa		2.59	□□□□□ -2
YMR046C	YMR046C	MRPL23	Q12487	163 aa	Predicted RBP	2.59	□□□□□ -2
YMR046C	YMR046C	RPL21B	Q12672	160 aa	Known RBP	2.59	□□□□□ -2
YMR046C	YMR046C	UTP10	P42945	1769 aa	Known RBP	2.59	□□□□□ -2
YMR046C	YMR046C	ZRT1	P32804	376 aa		2.58	□□□□□ -2
YMR046C	YMR046C	PDC2	P32896	925 aa		2.58	□□□□□ -2
YMR046C	YMR046C	RIB7	P33312	244 aa		2.58	□□□□□ -2
YMR046C	YMR046C	KTI12	P34253	313 aa	Known RBP	2.58	□□□□□ -2
YMR046C	YMR046C	SPL2	P38839	148 aa		2.58	□□□□□ -2
YMR046C	YMR046C	DSE1	P40077	573 aa		2.58	□□□□□ -2
YMR046C	YMR046C	STB1	P42845	420 aa		2.58	□□□□□ -2
YMR046C	YMR046C	YNL260C	P53846	198 aa		2.58	□□□□□ -2
YMR046C	YMR046C	RPL21A	Q02753	160 aa	Known RBP	2.58	□□□□□ -2
YMR046C	YMR046C	YPL080C	Q02826	108 aa		2.58	□□□□□ -2
YMR046C	YMR046C	YMR111C	Q04461	462 aa	Predicted RBP	2.58	□□□□□ -2
YMR046C	YMR046C	MRX9	Q07349	420 aa	Known RBP	2.58	□□□□□ -2
YMR046C	YMR046C	RRP36	Q12481	300 aa	Predicted RBP	2.58	□□□□□ -2
YMR046C	YMR046C	RAD7	P06779	565 aa		2.57	□□□□□ -2

Retrieved 100 of 5,963 RNA–protein pairs in 21.9 ms