RNA–Protein interactions for RNA: YDR243C

PRP28, Transcript of RNA helicase in the DEAD-box family, yeast

Gene PRP28, Length 1,767 nt, Biotype protein coding.

RNA		Protein				Prediction (catRAPID)		Interaction (RIP-Chip)
Gene	Ensembl Transcript ID	Gene	UniProt Accession	Length	Protein Status	Prediction Score	Prediction z-Score	Detected Interaction
PRP28	YDR243C	ALP1	P38971	573 aa		4.16	□□□□□ -1.74
PRP28	YDR243C	PHO90	P39535	881 aa		4.16	□□□□□ -1.74
PRP28	YDR243C	BDH1	P39714	382 aa		4.16	□□□□□ -1.74
PRP28	YDR243C	SWM2	P40342	146 aa		4.16	□□□□□ -1.74
PRP28	YDR243C	YIL089W	P40500	205 aa		4.16	□□□□□ -1.74
PRP28	YDR243C	SNM1	P40993	198 aa		4.16	□□□□□ -1.74
PRP28	YDR243C	ALY2	P47029	1046 aa		4.16	□□□□□ -1.74
PRP28	YDR243C	SAM37	P50110	327 aa		4.16	□□□□□ -1.74
PRP28	YDR243C	AVT4	P50944	713 aa		4.16	□□□□□ -1.74
PRP28	YDR243C	MEP3	P53390	489 aa		4.16	□□□□□ -1.74
PRP28	YDR243C	MSC2	Q03455	724 aa		4.16	□□□□□ -1.74
PRP28	YDR243C	GMC1	Q04399	608 aa		4.16	□□□□□ -1.74
PRP28	YDR243C	ATG39	Q06159	398 aa		4.16	□□□□□ -1.74
PRP28	YDR243C	GRE1	Q08969	168 aa		4.16	□□□□□ -1.74
PRP28	YDR243C	YDR018C	Q12185	396 aa		4.16	□□□□□ -1.74
PRP28	YDR243C	ATG5	Q12380	294 aa		4.16	□□□□□ -1.74
PRP28	YDR243C	YOL159C-A	Q3E769	90 aa		4.16	□□□□□ -1.74
PRP28	YDR243C	YLR361C-A	Q3E795	98 aa		4.16	□□□□□ -1.74
PRP28	YDR243C	RHO2	P06781	192 aa		4.15	□□□□□ -1.74
PRP28	YDR243C	SGA1	P08019	549 aa		4.15	□□□□□ -1.74
PRP28	YDR243C	SRM1	P21827	482 aa		4.15	□□□□□ -1.74
PRP28	YDR243C	MAG1	P22134	296 aa	Known RBP	4.15	□□□□□ -1.74
PRP28	YDR243C	TAH1	P25638	111 aa	Predicted RBP	4.15	□□□□□ -1.74
PRP28	YDR243C	ARO2	P28777	376 aa	Known RBP	4.15	□□□□□ -1.74
PRP28	YDR243C	STE14	P32584	239 aa		4.15	□□□□□ -1.74
PRP28	YDR243C	CKB2	P38930	258 aa		4.15	□□□□□ -1.74
PRP28	YDR243C	YER085C	P40058	173 aa		4.15	□□□□□ -1.74
PRP28	YDR243C	SMK1	P41808	388 aa		4.15	□□□□□ -1.74
PRP28	YDR243C	DPB11	P47027	764 aa	Predicted RBP	4.15	□□□□□ -1.74
PRP28	YDR243C	AIF1	P52923	378 aa		4.15	□□□□□ -1.74
PRP28	YDR243C	APM1	Q00776	475 aa	Predicted RBP	4.15	□□□□□ -1.74
PRP28	YDR243C	SPR6	Q01684	191 aa		4.15	□□□□□ -1.74
PRP28	YDR243C	PPN1	Q04119	674 aa		4.15	□□□□□ -1.74
PRP28	YDR243C	RRP45	Q05636	305 aa	Known RBP	4.15	□□□□□ -1.74
PRP28	YDR243C	CDD1	Q06549	142 aa		4.15	□□□□□ -1.74
PRP28	YDR243C	GPM2	Q12008	311 aa		4.15	□□□□□ -1.74
PRP28	YDR243C	PST2	Q12335	198 aa	Known RBP	4.15	□□□□□ -1.74
PRP28	YDR243C	RRI1	Q12468	440 aa		4.15	□□□□□ -1.74
PRP28	YDR243C	SLO1	Q3E784	85 aa		4.15	□□□□□ -1.74
PRP28	YDR243C	YIL134C-A	Q45U18	67 aa		4.15	□□□□□ -1.74
PRP28	YDR243C	SUS1	Q6WNK7	96 aa		4.15	□□□□□ -1.74
PRP28	YDR243C	COX2	P00410	251 aa		4.14	□□□□□ -1.75
PRP28	YDR243C	HTS1	P07263	546 aa	Known RBP	4.14	□□□□□ -1.75
PRP28	YDR243C	ERS1	P17261	260 aa		4.14	□□□□□ -1.75
PRP28	YDR243C	YCR102C	P25608	368 aa		4.14	□□□□□ -1.75
PRP28	YDR243C	ADE1	P27616	306 aa		4.14	□□□□□ -1.75
PRP28	YDR243C	AEP1	P32493	518 aa		4.14	□□□□□ -1.75
PRP28	YDR243C	YEF1	P32622	495 aa		4.14	□□□□□ -1.75
PRP28	YDR243C	UPS2	P35200	230 aa		4.14	□□□□□ -1.75
PRP28	YDR243C	MCH2	P36032	473 aa		4.14	□□□□□ -1.75
PRP28	YDR243C	DBP8	P38719	431 aa		4.14	□□□□□ -1.75
PRP28	YDR243C	SFB3	P38810	929 aa		4.14	□□□□□ -1.75
PRP28	YDR243C	PNT1	P38969	423 aa		4.14	□□□□□ -1.75
PRP28	YDR243C	HEM14	P40012	539 aa		4.14	□□□□□ -1.75
PRP28	YDR243C	YER121W	P40076	114 aa		4.14	□□□□□ -1.75
PRP28	YDR243C	VMA21	P41806	77 aa		4.14	□□□□□ -1.75
PRP28	YDR243C	BAP3	P41815	604 aa		4.14	□□□□□ -1.75
PRP28	YDR243C	OTU1	P43558	301 aa		4.14	□□□□□ -1.75
PRP28	YDR243C	TOS3	P43637	560 aa		4.14	□□□□□ -1.75
PRP28	YDR243C	TAD2	P47058	250 aa		4.14	□□□□□ -1.75
PRP28	YDR243C	FAA4	P47912	694 aa	Known RBP	4.14	□□□□□ -1.75
PRP28	YDR243C	TIM21	P53220	239 aa		4.14	□□□□□ -1.75
PRP28	YDR243C	NCE103	P53615	221 aa		4.14	□□□□□ -1.75
PRP28	YDR243C	CUS2	P53830	285 aa	Predicted RBP	4.14	□□□□□ -1.75
PRP28	YDR243C	ACT1	P60010	375 aa	Known RBP	4.14	□□□□□ -1.75
PRP28	YDR243C	YVH1	Q02256	364 aa	Known RBP	4.14	□□□□□ -1.75
PRP28	YDR243C	VPS28	Q02767	242 aa		4.14	□□□□□ -1.75
PRP28	YDR243C	DOT1	Q04089	582 aa	Known RBP	4.14	□□□□□ -1.75
PRP28	YDR243C	TMN2	Q04562	672 aa		4.14	□□□□□ -1.75
PRP28	YDR243C	YOL159C	Q08300	171 aa		4.14	□□□□□ -1.75
PRP28	YDR243C	RRG7	Q08774	242 aa	Predicted RBP	4.14	□□□□□ -1.75
PRP28	YDR243C	AHA1	Q12449	350 aa	Known RBP	4.14	□□□□□ -1.75
PRP28	YDR243C	PAR32	Q12515	295 aa	Known RBP	4.14	□□□□□ -1.75
PRP28	YDR243C	YNR034W-A	Q3E841	98 aa		4.14	□□□□□ -1.75
PRP28	YDR243C	YRF1-1	P0CX20	1796 aa		4.14	□□□□□ -1.75
PRP28	YDR243C	YRF1-5	P0CX21	1796 aa		4.14	□□□□□ -1.75
PRP28	YDR243C	YRF1-8	P0CX22	1796 aa		4.14	□□□□□ -1.75
PRP28	YDR243C	ALG7	P07286	448 aa		4.14	□□□□□ -1.75
PRP28	YDR243C	SST2	P11972	698 aa	Known RBP	4.14	□□□□□ -1.75
PRP28	YDR243C	CDC34	P14682	295 aa		4.14	□□□□□ -1.75
PRP28	YDR243C	PDA1	P16387	420 aa	Known RBP	4.14	□□□□□ -1.75
PRP28	YDR243C	STE4	P18851	423 aa		4.14	□□□□□ -1.75
PRP28	YDR243C	SCL1	P21243	252 aa	Known RBP	4.14	□□□□□ -1.75
PRP28	YDR243C	EPT1	P22140	391 aa		4.14	□□□□□ -1.75
PRP28	YDR243C	ELO2	P25358	347 aa		4.14	□□□□□ -1.75
PRP28	YDR243C	STP22	P25604	385 aa		4.14	□□□□□ -1.75
PRP28	YDR243C	SFP1	P32432	683 aa		4.14	□□□□□ -1.75
PRP28	YDR243C	MRPL6	P32904	214 aa		4.14	□□□□□ -1.75
PRP28	YDR243C	UBS1	P38290	277 aa		4.14	□□□□□ -1.75
PRP28	YDR243C	SHU2	P38957	223 aa		4.14	□□□□□ -1.75
PRP28	YDR243C	PRP39	P39682	629 aa	Known RBP	4.14	□□□□□ -1.75
PRP28	YDR243C	GDI1	P39958	451 aa	Known RBP	4.14	□□□□□ -1.75
PRP28	YDR243C	GET2	P40056	285 aa		4.14	□□□□□ -1.75
PRP28	YDR243C	YER188W	P40103	239 aa		4.14	□□□□□ -1.75
PRP28	YDR243C	YJL218W	P40892	196 aa	Known RBP	4.14	□□□□□ -1.75
PRP28	YDR243C	QRI7	P43122	407 aa		4.14	□□□□□ -1.75
PRP28	YDR243C	GPI14	P47088	403 aa	Known RBP	4.14	□□□□□ -1.75
PRP28	YDR243C	YJR120W	P47157	116 aa		4.14	□□□□□ -1.75
PRP28	YDR243C	PHO23	P50947	330 aa		4.14	□□□□□ -1.75
PRP28	YDR243C	ROG1	P53118	685 aa		4.14	□□□□□ -1.75

Retrieved 100 of 5,963 RNA–protein pairs in 28.1 ms