RNA–Protein interactions for RNA: YDL212W

SHR3, Transcript of Endoplasmic reticulum packaging chaperone, yeastyeast

Gene SHR3, Length 633 nt, Biotype protein coding, Subcellular localisation Mitochondria .

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RNA Protein Prediction (catRAPID) Interaction (RIP-Chip)
Gene Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score Detected Interaction
SHR3YDL212W CSI1Q04368 295 aa2.6□□□□□ -1.99
SHR3YDL212W SEC13Q04491 297 aaKnown RBP2.6□□□□□ -1.99
SHR3YDL212W CUR1Q06469 252 aa2.6□□□□□ -1.99
SHR3YDL212W MDY2Q12285 212 aa2.6□□□□□ -1.99
SHR3YDL212W PAA1Q12447 191 aaKnown RBP2.6□□□□□ -1.99
SHR3YDL212W MET2P08465 486 aa2.59□□□□□ -1.99
SHR3YDL212W ACB1P31787 87 aa2.59□□□□□ -1.99
SHR3YDL212W UTR5P32630 166 aa2.59□□□□□ -1.99
SHR3YDL212W SOP4P39543 234 aaPredicted RBP2.59□□□□□ -1.99
SHR3YDL212W UTP25P40498 721 aaKnown RBP2.59□□□□□ -1.99
SHR3YDL212W UFD1P53044 361 aa2.59□□□□□ -1.99
SHR3YDL212W YOR292CQ08743 309 aa2.59□□□□□ -1.99
SHR3YDL212W GCD2P12754 651 aaPredicted RBP2.58□□□□□ -2
SHR3YDL212W ERD1P16151 362 aa2.58□□□□□ -2
SHR3YDL212W KRE1P17260 313 aa2.58□□□□□ -2
SHR3YDL212W FET3P38993 636 aa2.58□□□□□ -2
SHR3YDL212W MNN9P39107 395 aaKnown RBP2.58□□□□□ -2
SHR3YDL212W EDC2P40023 145 aaPredicted RBP2.58□□□□□ -2
SHR3YDL212W ECO1P43605 281 aa2.58□□□□□ -2
SHR3YDL212W MIX17Q03667 156 aa2.58□□□□□ -2
SHR3YDL212W YMR111CQ04461 462 aaPredicted RBP2.58□□□□□ -2
SHR3YDL212W IES3Q12345 250 aa2.58□□□□□ -2
SHR3YDL212W YAL063C-AQ3E791 96 aa2.58□□□□□ -2
SHR3YDL212W CDC40P40968 455 aaPredicted RBP2.57□□□□□ -2
SHR3YDL212W LOC1P43586 204 aaPredicted RBP2.57□□□□□ -2
SHR3YDL212W OKP1P53298 406 aa2.57□□□□□ -2
SHR3YDL212W YPL080CQ02826 108 aa2.57□□□□□ -2
SHR3YDL212W CLP1Q08685 445 aaPredicted RBP2.57□□□□□ -2
SHR3YDL212W CAR2P07991 424 aaKnown RBP2.56□□□□□ -2
SHR3YDL212W YCR025CP25352 136 aa2.56□□□□□ -2
SHR3YDL212W IRC4Q03036 179 aa2.56□□□□□ -2
SHR3YDL212W VAC14Q06708 880 aa2.56□□□□□ -2
SHR3YDL212W RLP24Q07915 199 aaKnown RBP2.56□□□□□ -2
SHR3YDL212W RRF1P38771 230 aa2.55□□□□□ -2
SHR3YDL212W SCC4P40090 624 aa2.55□□□□□ -2
SHR3YDL212W BUD13P46947 266 aaPredicted RBP2.55□□□□□ -2
SHR3YDL212W SNX41Q04053 625 aa2.55□□□□□ -2
SHR3YDL212W YDR114CQ04597 100 aa2.55□□□□□ -2
SHR3YDL212W RRG8Q06109 277 aa2.55□□□□□ -2
SHR3YDL212W SAM4Q08985 325 aaKnown RBP2.55□□□□□ -2
SHR3YDL212W YPR1Q12458 312 aa2.55□□□□□ -2
SHR3YDL212W CSE1P33307 960 aa2.54□□□□□ -2
SHR3YDL212W YHR035WP38769 630 aa2.54□□□□□ -2
SHR3YDL212W VOA1P53262 265 aa2.54□□□□□ -2
SHR3YDL212W BIO4P53630 237 aa2.54□□□□□ -2
SHR3YDL212W FEX1Q08913 375 aa2.54□□□□□ -2
SHR3YDL212W FEX2Q08991 375 aa2.54□□□□□ -2
SHR3YDL212W VIK1Q12045 647 aa2.54□□□□□ -2
SHR3YDL212W DCP1Q12517 231 aaPredicted RBP2.54□□□□□ -2
SHR3YDL212W DBP3P20447 523 aaKnown RBP2.53□□□□□ -2
SHR3YDL212W VPH2P32341 215 aa2.53□□□□□ -2
SHR3YDL212W ZRT1P32804 376 aa2.53□□□□□ -2
SHR3YDL212W AIM29P36154 155 aa2.53□□□□□ -2
SHR3YDL212W YPC1P38298 316 aa2.53□□□□□ -2
SHR3YDL212W GCD14P46959 383 aaPredicted RBP2.53□□□□□ -2
SHR3YDL212W LOH1P47055 219 aa2.53□□□□□ -2
SHR3YDL212W OSH6Q02201 448 aa2.53□□□□□ -2
SHR3YDL212W ECM18Q04623 453 aa2.53□□□□□ -2
SHR3YDL212W PBP4Q07362 185 aaKnown RBP2.53□□□□□ -2
SHR3YDL212W APC9Q12107 265 aa2.53□□□□□ -2
SHR3YDL212W MRX4Q12467 430 aa2.53□□□□□ -2
SHR3YDL212W LAG2Q92325 660 aa2.53□□□□□ -2
SHR3YDL212W SAR1P20606 190 aaKnown RBP2.52□□□□□ -2.01
SHR3YDL212W RPL5P26321 297 aaKnown RBP2.52□□□□□ -2.01
SHR3YDL212W MCH2P36032 473 aa2.52□□□□□ -2.01
SHR3YDL212W MRPL40P36534 297 aa2.52□□□□□ -2.01
SHR3YDL212W SPO19Q03029 223 aa2.52□□□□□ -2.01
SHR3YDL212W YLR446WQ06204 433 aa2.52□□□□□ -2.01
SHR3YDL212W PFK27Q12471 397 aaPredicted RBP2.52□□□□□ -2.01
SHR3YDL212W YAK1P14680 807 aa2.51□□□□□ -2.01
SHR3YDL212W YHL044WP38727 235 aa2.51□□□□□ -2.01
SHR3YDL212W PCL7P40186 285 aa2.51□□□□□ -2.01
SHR3YDL212W YIL012WP40551 113 aa2.51□□□□□ -2.01
SHR3YDL212W PNC1P53184 216 aaKnown RBP2.51□□□□□ -2.01
SHR3YDL212W YGR266WP53326 701 aa2.51□□□□□ -2.01
SHR3YDL212W ARP5P53946 755 aa2.51□□□□□ -2.01
SHR3YDL212W ERV25P54837 211 aaKnown RBP2.51□□□□□ -2.01
SHR3YDL212W YPL278CQ08990 100 aa2.51□□□□□ -2.01
SHR3YDL212W UTP23Q12339 254 aaKnown RBP2.51□□□□□ -2.01
SHR3YDL212W RAD7P06779 565 aa2.5□□□□□ -2.01
SHR3YDL212W YOL163WP0CF20 169 aa2.5□□□□□ -2.01
SHR3YDL212W RPC25P35718 212 aa2.5□□□□□ -2.01
SHR3YDL212W YKR032WP36127 104 aa2.5□□□□□ -2.01
SHR3YDL212W MED6P38782 295 aa2.5□□□□□ -2.01
SHR3YDL212W COX16P47081 118 aa2.5□□□□□ -2.01
SHR3YDL212W UBC13P52490 153 aa2.5□□□□□ -2.01
SHR3YDL212W SIA1Q12212 622 aa2.5□□□□□ -2.01
SHR3YDL212W RPL31AP0C2H8 113 aaKnown RBP2.49□□□□□ -2.01
SHR3YDL212W UGA1P17649 471 aa2.49□□□□□ -2.01
SHR3YDL212W GPI12P23797 304 aa2.49□□□□□ -2.01
SHR3YDL212W DAL80P26343 269 aa2.49□□□□□ -2.01
SHR3YDL212W CDC13P32797 924 aaKnown RBP2.49□□□□□ -2.01
SHR3YDL212W TPO5P36029 618 aa2.49□□□□□ -2.01
SHR3YDL212W YBL081WP38180 368 aaKnown RBP2.49□□□□□ -2.01
SHR3YDL212W SYS1P41544 203 aa2.49□□□□□ -2.01
SHR3YDL212W GDS1P41913 522 aa2.49□□□□□ -2.01
SHR3YDL212W YGL185CP53100 379 aa2.49□□□□□ -2.01
SHR3YDL212W RGM1Q00453 211 aa2.49□□□□□ -2.01
SHR3YDL212W RSA4P25382 515 aaKnown RBP2.48□□□□□ -2.01
SHR3YDL212W RPL16BP26785 198 aaKnown RBP2.48□□□□□ -2.01
Retrieved 100 of 5,963 RNA–protein pairs in 187.5 ms