RNA–Protein interactions for RNA: YKR001C

VPS1, Transcript of Dynamin-like GTPase required for vacuolar sorting, yeast

Gene VPS1, Length 2,115 nt, Biotype protein coding.

RNA		Protein				Prediction (catRAPID)		Interaction (RIP-Chip)
Gene	Ensembl Transcript ID	Gene	UniProt Accession	Length	Protein Status	Prediction Score	Prediction z-Score	Detected Interaction
VPS1	YKR001C	YHL008C	P38750	627 aa		5.09	□□□□□ -1.59
VPS1	YKR001C	RPF1	P38805	295 aa	Known RBP	5.09	□□□□□ -1.59
VPS1	YKR001C	ATG7	P38862	630 aa		5.09	□□□□□ -1.59
VPS1	YKR001C	PHM8	P40025	321 aa		5.09	□□□□□ -1.59
VPS1	YKR001C	SEC24	P40482	926 aa	Known RBP	5.09	□□□□□ -1.59
VPS1	YKR001C	HOC1	P47124	396 aa		5.09	□□□□□ -1.59
VPS1	YKR001C	YJR096W	P47137	282 aa		5.09	□□□□□ -1.59
VPS1	YKR001C	AAD10	P47182	288 aa		5.09	□□□□□ -1.59
VPS1	YKR001C	GND2	P53319	492 aa		5.09	□□□□□ -1.59
VPS1	YKR001C	BOR1	P53838	576 aa		5.09	□□□□□ -1.59
VPS1	YKR001C	SED5	Q01590	340 aa		5.09	□□□□□ -1.59
VPS1	YKR001C	YPL077C	Q02831	240 aa		5.09	□□□□□ -1.59
VPS1	YKR001C	DPP1	Q05521	289 aa		5.09	□□□□□ -1.59
VPS1	YKR001C	PAM18	Q07914	168 aa		5.09	□□□□□ -1.59
VPS1	YKR001C	LPX1	Q12405	387 aa	Known RBP	5.09	□□□□□ -1.59
VPS1	YKR001C	YIR021W-A	Q3E739	70 aa		5.09	□□□□□ -1.59
VPS1	YKR001C	POF1	P25576	258 aa		5.09	□□□□□ -1.59
VPS1	YKR001C	UGP1	P32861	499 aa	Known RBP	5.09	□□□□□ -1.59
VPS1	YKR001C	YPT53	P36019	220 aa		5.09	□□□□□ -1.59
VPS1	YKR001C	IST2	P38250	946 aa		5.09	□□□□□ -1.59
VPS1	YKR001C	ATG12	P38316	186 aa		5.09	□□□□□ -1.59
VPS1	YKR001C	GPI16	P38875	610 aa		5.09	□□□□□ -1.59
VPS1	YKR001C	COX15	P40086	486 aa		5.09	□□□□□ -1.59
VPS1	YKR001C	SMX2	P40204	77 aa	Known RBP	5.09	□□□□□ -1.59
VPS1	YKR001C	SFH5	P47008	294 aa		5.09	□□□□□ -1.59
VPS1	YKR001C	YDR132C	Q03900	495 aa		5.09	□□□□□ -1.59
VPS1	YKR001C	ATG39	Q06159	398 aa		5.09	□□□□□ -1.59
VPS1	YKR001C	YTM1	Q12024	460 aa	Predicted RBP	5.09	□□□□□ -1.59
VPS1	YKR001C	YPR027C	Q12079	277 aa		5.09	□□□□□ -1.59
VPS1	YKR001C	QCR7	P00128	127 aa		5.08	□□□□□ -1.6
VPS1	YKR001C	NAM2	P11325	894 aa		5.08	□□□□□ -1.6
VPS1	YKR001C	ATR1	P13090	542 aa		5.08	□□□□□ -1.6
VPS1	YKR001C	FRE1	P32791	686 aa		5.08	□□□□□ -1.6
VPS1	YKR001C	UTH1	P36135	365 aa		5.08	□□□□□ -1.6
VPS1	YKR001C	SOL2	P37262	315 aa		5.08	□□□□□ -1.6
VPS1	YKR001C	CKB2	P38930	258 aa		5.08	□□□□□ -1.6
VPS1	YKR001C	COG3	P40094	801 aa		5.08	□□□□□ -1.6
VPS1	YKR001C	FLC3	P53121	802 aa		5.08	□□□□□ -1.6
VPS1	YKR001C	NRD1	P53617	575 aa	Known RBP RIP-Chip data	5.08	□□□□□ -1.6	not detected
VPS1	YKR001C	IDP3	P53982	420 aa	Known RBP	5.08	□□□□□ -1.6
VPS1	YKR001C	ARG5,6	Q01217	863 aa		5.08	□□□□□ -1.6
VPS1	YKR001C	CAC2	Q04199	468 aa		5.08	□□□□□ -1.6
VPS1	YKR001C	MRX9	Q07349	420 aa	Known RBP	5.08	□□□□□ -1.6
VPS1	YKR001C	BTS1	Q12051	335 aa		5.08	□□□□□ -1.6
VPS1	YKR001C	NMD4	Q12129	218 aa		5.08	□□□□□ -1.6
VPS1	YKR001C	WSC3	Q12215	556 aa		5.08	□□□□□ -1.6
VPS1	YKR001C	YLR046C	Q12253	270 aa		5.08	□□□□□ -1.6
VPS1	YKR001C	WTM1	Q12363	437 aa	Known RBP	5.08	□□□□□ -1.6
VPS1	YKR001C	AI1	P03875	834 aa		5.08	□□□□□ -1.6
VPS1	YKR001C	HTS1	P07263	546 aa	Known RBP	5.08	□□□□□ -1.6
VPS1	YKR001C	RPS28B	P0C0X0	67 aa	Known RBP	5.08	□□□□□ -1.6
VPS1	YKR001C	SAG1	P20840	650 aa		5.08	□□□□□ -1.6
VPS1	YKR001C	PET18	P25362	215 aa		5.08	□□□□□ -1.6
VPS1	YKR001C	DSS4	P32601	143 aa		5.08	□□□□□ -1.6
VPS1	YKR001C	YPK3	P38070	525 aa		5.08	□□□□□ -1.6
VPS1	YKR001C	SLM4	P38247	162 aa		5.08	□□□□□ -1.6
VPS1	YKR001C	YBR137W	P38276	179 aa		5.08	□□□□□ -1.6
VPS1	YKR001C	RCK1	P38622	512 aa		5.08	□□□□□ -1.6
VPS1	YKR001C	AVT2	P39981	480 aa		5.08	□□□□□ -1.6
VPS1	YKR001C	SPT20	P50875	604 aa		5.08	□□□□□ -1.6
VPS1	YKR001C	PEX31	P53203	462 aa		5.08	□□□□□ -1.6
VPS1	YKR001C	HHO1	P53551	258 aa		5.08	□□□□□ -1.6
VPS1	YKR001C	ATG33	Q06485	197 aa		5.08	□□□□□ -1.6
VPS1	YKR001C	IWR1	Q07532	353 aa	Predicted RBP	5.08	□□□□□ -1.6
VPS1	YKR001C	TPO4	Q12256	659 aa		5.08	□□□□□ -1.6
VPS1	YKR001C	TRM13	Q12383	476 aa		5.08	□□□□□ -1.6
VPS1	YKR001C	SLO1	Q3E784	85 aa		5.08	□□□□□ -1.6
VPS1	YKR001C	RPS28A	Q3E7X9	67 aa	Predicted RBP	5.08	□□□□□ -1.6
VPS1	YKR001C	AI5_ALPHA	Q9ZZX1	630 aa		5.08	□□□□□ -1.6
VPS1	YKR001C	YPT1	P01123	206 aa	Known RBP	5.07	□□□□□ -1.6
VPS1	YKR001C	YKL162C	P36052	402 aa		5.07	□□□□□ -1.6
VPS1	YKR001C	PLB1	P39105	664 aa		5.07	□□□□□ -1.6
VPS1	YKR001C	PFK26	P40433	827 aa	Known RBP	5.07	□□□□□ -1.6
VPS1	YKR001C	ECM27	P47144	725 aa		5.07	□□□□□ -1.6
VPS1	YKR001C	CDC55	Q00362	526 aa		5.07	□□□□□ -1.6
VPS1	YKR001C	THI72	Q08579	599 aa		5.07	□□□□□ -1.6
VPS1	YKR001C	FSF1	Q12029	327 aa	Known RBP	5.07	□□□□□ -1.6
VPS1	YKR001C	FCY22	Q12119	530 aa		5.07	□□□□□ -1.6
VPS1	YKR001C	RKI1	Q12189	258 aa		5.07	□□□□□ -1.6
VPS1	YKR001C	TY1A-BR	Q12217	440 aa		5.07	□□□□□ -1.6
VPS1	YKR001C	TPT1	Q12272	230 aa	Known RBP	5.07	□□□□□ -1.6
VPS1	YKR001C	TFB5	Q3E7C1	72 aa	Predicted RBP	5.07	□□□□□ -1.6
VPS1	YKR001C	DDP1	Q99321	188 aa	Known RBP	5.07	□□□□□ -1.6
VPS1	YKR001C	BCY1	P07278	416 aa	Known RBP	5.06	□□□□□ -1.6
VPS1	YKR001C	CUP2	P15315	225 aa		5.06	□□□□□ -1.6
VPS1	YKR001C	STE18	P18852	110 aa		5.06	□□□□□ -1.6
VPS1	YKR001C	NRP1	P32770	719 aa	Known RBP RIP-Chip data	5.06	□□□□□ -1.6	not detected
VPS1	YKR001C	AVT5	P38176	459 aa		5.06	□□□□□ -1.6
VPS1	YKR001C	YBR013C	P38215	129 aa		5.06	□□□□□ -1.6
VPS1	YKR001C	YAR028W	P39548	234 aa		5.06	□□□□□ -1.6
VPS1	YKR001C	SMB1	P40018	196 aa	Known RBP	5.06	□□□□□ -1.6
VPS1	YKR001C	TIR3	P40552	269 aa		5.06	□□□□□ -1.6
VPS1	YKR001C	YJR011C	P47086	261 aa	Predicted RBP	5.06	□□□□□ -1.6
VPS1	YKR001C	VPS73	P53142	486 aa	Known RBP	5.06	□□□□□ -1.6
VPS1	YKR001C	TDA7	P53882	636 aa	Predicted RBP	5.06	□□□□□ -1.6
VPS1	YKR001C	ASI2	P53895	289 aa		5.06	□□□□□ -1.6
VPS1	YKR001C	STD1	Q02794	444 aa		5.06	□□□□□ -1.6
VPS1	YKR001C	YPL108W	Q02872	168 aa	Predicted RBP	5.06	□□□□□ -1.6
VPS1	YKR001C	DIG2	Q03373	323 aa	Known RBP	5.06	□□□□□ -1.6
VPS1	YKR001C	PUN1	Q06991	263 aa		5.06	□□□□□ -1.6

Retrieved 100 of 5,963 RNA–protein pairs in 38.5 ms