RNA–Protein interactions for RNA: YER139C

RTR1, Transcript of CTD phosphatase, yeastyeast

Gene RTR1, Length 681 nt, Biotype protein coding.

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RNA Protein Prediction (catRAPID) Interaction (RIP-Chip)
Gene Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score Detected Interaction
RTR1YER139C YGL118CP53132 145 aa1.23□□□□□ -2.21
RTR1YER139C CAX4P53223 239 aa1.23□□□□□ -2.21
RTR1YER139C YGR168CP53293 376 aa1.23□□□□□ -2.21
RTR1YER139C PDR16P53860 351 aaKnown RBP1.23□□□□□ -2.21
RTR1YER139C ECM19Q06011 112 aa1.23□□□□□ -2.21
RTR1YER139C SPH1Q06160 661 aa1.23□□□□□ -2.21
RTR1YER139C MRX9Q07349 420 aaKnown RBP1.23□□□□□ -2.21
RTR1YER139C PGC1Q08959 321 aa1.23□□□□□ -2.21
RTR1YER139C YDR262WQ12331 272 aa1.23□□□□□ -2.21
RTR1YER139C RPC40P07703 335 aaKnown RBP1.22□□□□□ -2.21
RTR1YER139C RNR2P09938 399 aaKnown RBP1.22□□□□□ -2.21
RTR1YER139C CUP2P15315 225 aa1.22□□□□□ -2.21
RTR1YER139C RPB9P27999 122 aa1.22□□□□□ -2.21
RTR1YER139C ACB1P31787 87 aa1.22□□□□□ -2.21
RTR1YER139C RRG9P40156 214 aa1.22□□□□□ -2.21
RTR1YER139C NAS2P40555 220 aa1.22□□□□□ -2.21
RTR1YER139C MIC19P43594 170 aa1.22□□□□□ -2.21
RTR1YER139C MPP10P47083 593 aaKnown RBP1.22□□□□□ -2.21
RTR1YER139C SMD1Q02260 146 aaPredicted RBP1.22□□□□□ -2.21
RTR1YER139C RVB1Q03940 463 aaKnown RBP1.22□□□□□ -2.21
RTR1YER139C GMC1Q04399 608 aa1.22□□□□□ -2.21
RTR1YER139C DTD1Q07648 150 aaKnown RBP1.22□□□□□ -2.21
RTR1YER139C MIM1Q08176 113 aa1.22□□□□□ -2.21
RTR1YER139C RDL2Q08742 149 aaKnown RBP1.22□□□□□ -2.21
RTR1YER139C DFM1Q12743 341 aaKnown RBP1.22□□□□□ -2.21
RTR1YER139C YKL187CP34231 750 aa1.21□□□□□ -2.22
RTR1YER139C UIP5P36137 443 aa1.21□□□□□ -2.22
RTR1YER139C RCK1P38622 512 aa1.21□□□□□ -2.22
RTR1YER139C CTM1P38818 585 aa1.21□□□□□ -2.22
RTR1YER139C LIN1P38852 340 aaPredicted RBP1.21□□□□□ -2.22
RTR1YER139C PET8P38921 284 aa1.21□□□□□ -2.22
RTR1YER139C GPI8P49018 411 aa1.21□□□□□ -2.22
RTR1YER139C SDS23P53172 527 aa1.21□□□□□ -2.22
RTR1YER139C RTC5Q12108 567 aaKnown RBP1.21□□□□□ -2.22
RTR1YER139C MDY2Q12285 212 aa1.21□□□□□ -2.22
RTR1YER139C PFK27Q12471 397 aaPredicted RBP1.21□□□□□ -2.22
RTR1YER139C PRM4Q12498 284 aa1.21□□□□□ -2.22
RTR1YER139C YIL002W-AQ3E7Z5 69 aa1.21□□□□□ -2.22
RTR1YER139C CBP2P03874 630 aaPredicted RBP1.2□□□□□ -2.22
RTR1YER139C RPS23AP0CX29 145 aaKnown RBP1.2□□□□□ -2.22
RTR1YER139C RPS23BP0CX30 145 aa1.2□□□□□ -2.22
RTR1YER139C GAL3P13045 520 aa1.2□□□□□ -2.22
RTR1YER139C HPR1P17629 752 aaKnown RBP1.2□□□□□ -2.22
RTR1YER139C DAL80P26343 269 aa1.2□□□□□ -2.22
RTR1YER139C INO2P26798 304 aa1.2□□□□□ -2.22
RTR1YER139C YPS1P32329 569 aa1.2□□□□□ -2.22
RTR1YER139C PPQ1P32945 549 aa1.2□□□□□ -2.22
RTR1YER139C ASP1P38986 381 aaPredicted RBP1.2□□□□□ -2.22
RTR1YER139C END3P39013 349 aa1.2□□□□□ -2.22
RTR1YER139C PES4P39684 611 aa1.2□□□□□ -2.22
RTR1YER139C SCC4P40090 624 aa1.2□□□□□ -2.22
RTR1YER139C PCL7P40186 285 aa1.2□□□□□ -2.22
RTR1YER139C SLM1P40485 686 aa1.2□□□□□ -2.22
RTR1YER139C SHE4P51534 789 aa1.2□□□□□ -2.22
RTR1YER139C YNR066CP53752 436 aa1.2□□□□□ -2.22
RTR1YER139C IRC4Q03036 179 aa1.2□□□□□ -2.22
RTR1YER139C SAM4Q08985 325 aaKnown RBP1.2□□□□□ -2.22
RTR1YER139C REX3Q12090 404 aa1.2□□□□□ -2.22
RTR1YER139C YPL245WQ12179 454 aaKnown RBP1.2□□□□□ -2.22
RTR1YER139C TFC7Q12415 435 aa1.2□□□□□ -2.22
RTR1YER139C PRP46Q12417 451 aaPredicted RBP1.2□□□□□ -2.22
RTR1YER139C GAL7P08431 366 aa1.19□□□□□ -2.22
RTR1YER139C TPM1P17536 199 aaKnown RBP1.19□□□□□ -2.22
RTR1YER139C ZRT1P32804 376 aa1.19□□□□□ -2.22
RTR1YER139C SUR1P33300 382 aa1.19□□□□□ -2.22
RTR1YER139C BUD2P33314 1104 aa1.19□□□□□ -2.22
RTR1YER139C MRPL40P36534 297 aa1.19□□□□□ -2.22
RTR1YER139C EDC2P40023 145 aaPredicted RBP1.19□□□□□ -2.22
RTR1YER139C OSW5P40219 148 aa1.19□□□□□ -2.22
RTR1YER139C AIM20P40451 204 aa1.19□□□□□ -2.22
RTR1YER139C ARP5P53946 755 aa1.19□□□□□ -2.22
RTR1YER139C YPL080CQ02826 108 aa1.19□□□□□ -2.22
RTR1YER139C SNX41Q04053 625 aa1.19□□□□□ -2.22
RTR1YER139C UBX2Q04228 584 aa1.19□□□□□ -2.22
RTR1YER139C YLR297WQ05899 129 aa1.19□□□□□ -2.22
RTR1YER139C DIB1Q06819 143 aaPredicted RBP1.19□□□□□ -2.22
RTR1YER139C YLR012CQ07927 99 aa1.19□□□□□ -2.22
RTR1YER139C YOR292CQ08743 309 aa1.19□□□□□ -2.22
RTR1YER139C IES3Q12345 250 aa1.19□□□□□ -2.22
RTR1YER139C DAL5P15365 543 aa1.18□□□□□ -2.22
RTR1YER139C ICL1P28240 557 aaPredicted RBP1.18□□□□□ -2.22
RTR1YER139C CSE1P33307 960 aa1.18□□□□□ -2.22
RTR1YER139C EBP2P36049 427 aaKnown RBP1.18□□□□□ -2.22
RTR1YER139C SDH4P37298 181 aa1.18□□□□□ -2.22
RTR1YER139C ECM14P38836 430 aa1.18□□□□□ -2.22
RTR1YER139C FET3P38993 636 aa1.18□□□□□ -2.22
RTR1YER139C SOP4P39543 234 aaPredicted RBP1.18□□□□□ -2.22
RTR1YER139C RTT105P40063 208 aa1.18□□□□□ -2.22
RTR1YER139C MEP1P40260 492 aa1.18□□□□□ -2.22
RTR1YER139C UTP25P40498 721 aaKnown RBP1.18□□□□□ -2.22
RTR1YER139C BUD13P46947 266 aaPredicted RBP1.18□□□□□ -2.22
RTR1YER139C CAB5Q03941 241 aa1.18□□□□□ -2.22
RTR1YER139C CSI1Q04368 295 aa1.18□□□□□ -2.22
RTR1YER139C MGR3Q04472 501 aa1.18□□□□□ -2.22
RTR1YER139C STE23Q06010 1027 aa1.18□□□□□ -2.22
RTR1YER139C PBP4Q07362 185 aaKnown RBP1.18□□□□□ -2.22
RTR1YER139C YPL264CQ08980 353 aa1.18□□□□□ -2.22
RTR1YER139C YPL278CQ08990 100 aa1.18□□□□□ -2.22
RTR1YER139C VIK1Q12045 647 aa1.18□□□□□ -2.22
RTR1YER139C YPR063CQ12160 140 aa1.18□□□□□ -2.22
Retrieved 100 of 5,963 RNA–protein pairs in 19.7 ms