RNA–Protein interactions for RNA: YAR002W

NUP60, Transcript of FG-nucleoporin component of central core of the nuclear pore complex, yeast

Gene NUP60, Length 1,620 nt, Biotype protein coding.

RNA		Protein				Prediction (catRAPID)		Interaction (RIP-Chip)
Gene	Ensembl Transcript ID	Gene	UniProt Accession	Length	Protein Status	Prediction Score	Prediction z-Score	Detected Interaction
NUP60	YAR002W	YPL068C	Q02749	293 aa		3.13	□□□□□ -1.91
NUP60	YAR002W	CTL1	Q03220	320 aa	Known RBP	3.13	□□□□□ -1.91
NUP60	YAR002W	FIN1	Q03898	291 aa		3.13	□□□□□ -1.91
NUP60	YAR002W	NAT4	Q04751	285 aa		3.13	□□□□□ -1.91
NUP60	YAR002W	ELP6	Q04868	273 aa		3.13	□□□□□ -1.91
NUP60	YAR002W	VID22	Q05934	901 aa		3.13	□□□□□ -1.91
NUP60	YAR002W	YFT2	Q06676	274 aa		3.13	□□□□□ -1.91
NUP60	YAR002W	SKI7	Q08491	747 aa	Predicted RBP	3.13	□□□□□ -1.91
NUP60	YAR002W	RKM5	Q12367	367 aa		3.13	□□□□□ -1.91
NUP60	YAR002W	YOR019W	Q99248	730 aa		3.13	□□□□□ -1.91
NUP60	YAR002W	YPR117W	Q06116	2489 aa		3.12	□□□□□ -1.91
NUP60	YAR002W	ADE5,7	P07244	802 aa	Known RBP	3.12	□□□□□ -1.91
NUP60	YAR002W	APN1	P22936	367 aa		3.12	□□□□□ -1.91
NUP60	YAR002W	PTC6	P25646	442 aa		3.12	□□□□□ -1.91
NUP60	YAR002W	YMC1	P32331	307 aa		3.12	□□□□□ -1.91
NUP60	YAR002W	SPT14	P32363	452 aa		3.12	□□□□□ -1.91
NUP60	YAR002W	SRB5	P32585	307 aa		3.12	□□□□□ -1.91
NUP60	YAR002W	SUR1	P33300	382 aa		3.12	□□□□□ -1.91
NUP60	YAR002W	MSN2	P33748	704 aa		3.12	□□□□□ -1.91
NUP60	YAR002W	ZRT3	P34240	503 aa		3.12	□□□□□ -1.91
NUP60	YAR002W	AUR1	P36107	401 aa	Predicted RBP	3.12	□□□□□ -1.91
NUP60	YAR002W	RPS20	P38701	121 aa	Known RBP	3.12	□□□□□ -1.91
NUP60	YAR002W	YHK8	P38776	514 aa		3.12	□□□□□ -1.91
NUP60	YAR002W	YHR097C	P38809	366 aa	Known RBP	3.12	□□□□□ -1.91
NUP60	YAR002W	ALP1	P38971	573 aa		3.12	□□□□□ -1.91
NUP60	YAR002W	ELO1	P39540	310 aa		3.12	□□□□□ -1.91
NUP60	YAR002W	YEL068C	P39977	110 aa		3.12	□□□□□ -1.91
NUP60	YAR002W	SER2	P42941	309 aa		3.12	□□□□□ -1.91
NUP60	YAR002W	YAE1	P47118	141 aa	Predicted RBP	3.12	□□□□□ -1.91
NUP60	YAR002W	TOS2	P50078	622 aa		3.12	□□□□□ -1.91
NUP60	YAR002W	TAF4	P50105	388 aa		3.12	□□□□□ -1.91
NUP60	YAR002W	ARO8	P53090	500 aa	Known RBP	3.12	□□□□□ -1.91
NUP60	YAR002W	VPS73	P53142	486 aa	Known RBP	3.12	□□□□□ -1.91
NUP60	YAR002W	SWS2	P53937	143 aa		3.12	□□□□□ -1.91
NUP60	YAR002W	EGD1	Q02642	157 aa	Known RBP	3.12	□□□□□ -1.91
NUP60	YAR002W	FDC1	Q03034	503 aa		3.12	□□□□□ -1.91
NUP60	YAR002W	OST6	Q03723	332 aa		3.12	□□□□□ -1.91
NUP60	YAR002W	YLR173W	Q06247	608 aa		3.12	□□□□□ -1.91
NUP60	YAR002W	CRT10	Q08226	957 aa		3.12	□□□□□ -1.91
NUP60	YAR002W	UIP4	Q08926	304 aa		3.12	□□□□□ -1.91
NUP60	YAR002W	SPC3	Q12133	184 aa		3.12	□□□□□ -1.91
NUP60	YAR002W	LEU9	Q12166	604 aa	Known RBP	3.12	□□□□□ -1.91
NUP60	YAR002W	TPO4	Q12256	659 aa		3.12	□□□□□ -1.91
NUP60	YAR002W	RRP12	Q12754	1228 aa	Known RBP	3.12	□□□□□ -1.91
NUP60	YAR002W	YOL162W	P0CF19	215 aa		3.11	□□□□□ -1.91
NUP60	YAR002W	CAP2	P13517	287 aa		3.11	□□□□□ -1.91
NUP60	YAR002W	DPM1	P14020	267 aa	Known RBP	3.11	□□□□□ -1.91
NUP60	YAR002W	CDC26	P14724	124 aa		3.11	□□□□□ -1.91
NUP60	YAR002W	AAC3	P18238	307 aa		3.11	□□□□□ -1.91
NUP60	YAR002W	PRP2	P20095	876 aa	Predicted RBP	3.11	□□□□□ -1.91
NUP60	YAR002W	MCK1	P21965	375 aa	Known RBP	3.11	□□□□□ -1.91
NUP60	YAR002W	CHA1	P25379	360 aa	Known RBP	3.11	□□□□□ -1.91
NUP60	YAR002W	YCR100C	P25606	316 aa		3.11	□□□□□ -1.91
NUP60	YAR002W	FEN2	P25621	512 aa	Known RBP	3.11	□□□□□ -1.91
NUP60	YAR002W	NRP1	P32770	719 aa	Known RBP RIP-Chip data	3.11	□□□□□ -1.91	not detected
NUP60	YAR002W	ORC2	P32833	620 aa		3.11	□□□□□ -1.91
NUP60	YAR002W	PTR2	P32901	601 aa		3.11	□□□□□ -1.91
NUP60	YAR002W	ARC19	P33204	171 aa	Known RBP	3.11	□□□□□ -1.91
NUP60	YAR002W	YOR062C	P36025	268 aa		3.11	□□□□□ -1.91
NUP60	YAR002W	RSM22	P36056	628 aa		3.11	□□□□□ -1.91
NUP60	YAR002W	RTC2	P38279	296 aa		3.11	□□□□□ -1.91
NUP60	YAR002W	MBA1	P38300	278 aa		3.11	□□□□□ -1.91
NUP60	YAR002W	ECM34	P38728	170 aa		3.11	□□□□□ -1.91
NUP60	YAR002W	TRR2	P38816	342 aa		3.11	□□□□□ -1.91
NUP60	YAR002W	CHL4	P38907	458 aa		3.11	□□□□□ -1.91
NUP60	YAR002W	HRB1	P38922	454 aa	Known RBP RIP-Chip data	3.11	□□□□□ -1.91	not detected
NUP60	YAR002W	PRP39	P39682	629 aa	Known RBP	3.11	□□□□□ -1.91
NUP60	YAR002W	MIT1	P40002	666 aa		3.11	□□□□□ -1.91
NUP60	YAR002W	GDS1	P41913	522 aa		3.11	□□□□□ -1.91
NUP60	YAR002W	PFS2	P42841	465 aa	Known RBP	3.11	□□□□□ -1.91
NUP60	YAR002W	CIS3	P47001	227 aa		3.11	□□□□□ -1.91
NUP60	YAR002W	MRH4	P53166	561 aa		3.11	□□□□□ -1.91
NUP60	YAR002W	MNT4	P53745	580 aa		3.11	□□□□□ -1.91
NUP60	YAR002W	YDR541C	Q03049	344 aa		3.11	□□□□□ -1.91
NUP60	YAR002W	ARV1	Q06541	321 aa		3.11	□□□□□ -1.91
NUP60	YAR002W	YEH1	Q07804	573 aa		3.11	□□□□□ -1.91
NUP60	YAR002W	PEX27	Q08580	376 aa		3.11	□□□□□ -1.91
NUP60	YAR002W	YDL211C	Q12121	372 aa		3.11	□□□□□ -1.91
NUP60	YAR002W	YOR214C	Q12282	236 aa		3.11	□□□□□ -1.91
NUP60	YAR002W	YDR262W	Q12331	272 aa		3.11	□□□□□ -1.91
NUP60	YAR002W	PCL9	Q12477	304 aa		3.11	□□□□□ -1.91
NUP60	YAR002W	YDL007C-A	Q2V2Q0	85 aa		3.11	□□□□□ -1.91
NUP60	YAR002W	TMA7	Q3E764	64 aa	Known RBP	3.11	□□□□□ -1.91
NUP60	YAR002W	SUS1	Q6WNK7	96 aa		3.11	□□□□□ -1.91
NUP60	YAR002W	YEL009C-A	A0A023PZF2	135 aa		3.11	□□□□□ -1.91
NUP60	YAR002W	ERD1	P16151	362 aa		3.11	□□□□□ -1.91
NUP60	YAR002W	HSP30	P25619	332 aa		3.11	□□□□□ -1.91
NUP60	YAR002W	ACH1	P32316	526 aa		3.11	□□□□□ -1.91
NUP60	YAR002W	ECM15	P35195	104 aa		3.11	□□□□□ -1.91
NUP60	YAR002W	SNU114	P36048	1008 aa	Known RBP	3.11	□□□□□ -1.91
NUP60	YAR002W	YBR063C	P38083	404 aa		3.11	□□□□□ -1.91
NUP60	YAR002W	SHE1	P38200	338 aa		3.11	□□□□□ -1.91
NUP60	YAR002W	FMC1	P40491	155 aa		3.11	□□□□□ -1.91
NUP60	YAR002W	YIL077C	P40508	320 aa		3.11	□□□□□ -1.91
NUP60	YAR002W	ATG18	P43601	500 aa		3.11	□□□□□ -1.91
NUP60	YAR002W	IBA57	P47158	497 aa		3.11	□□□□□ -1.91
NUP60	YAR002W	BPL1	P48445	690 aa	Predicted RBP	3.11	□□□□□ -1.91
NUP60	YAR002W	COS10	P52924	374 aa		3.11	□□□□□ -1.91
NUP60	YAR002W	HOL1	P53389	586 aa		3.11	□□□□□ -1.91
NUP60	YAR002W	YVH1	Q02256	364 aa	Known RBP	3.11	□□□□□ -1.91

Retrieved 100 of 5,963 RNA–protein pairs in 1435.1 ms