RNA–Protein interactions for RNA: ENST00000462258.1

SF3A3-204, Transcript of splicing factor 3a subunit 3, humanhuman

TSL 2

Gene SF3A3, Length 527 nt, Biotype processed transcript, Subcellular localisation Cytosol, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SF3A3-204ENST00000462258 GJB2P29033 226 aa11.32□□□□□ -0.6
SF3A3-204ENST00000462258 IRS1P35568 1242 aa11.32□□□□□ -0.6
SF3A3-204ENST00000462258 UBE3AQ05086 875 aa11.32□□□□□ -0.6
SF3A3-204ENST00000462258 HYAL1Q12794 435 aa11.32□□□□□ -0.6
SF3A3-204ENST00000462258 CAPSQ13938 189 aa11.32□□□□□ -0.6
SF3A3-204ENST00000462258 TFDP1Q14186 410 aa11.32□□□□□ -0.6
SF3A3-204ENST00000462258 MXD4Q14582 209 aaPredicted RBP11.32□□□□□ -0.6
SF3A3-204ENST00000462258 COL19A1Q14993 1142 aa11.32□□□□□ -0.6
SF3A3-204ENST00000462258 LEXMQ3ZCV2 418 aa11.32□□□□□ -0.6
SF3A3-204ENST00000462258 HAUS3Q68CZ6 603 aa11.32□□□□□ -0.6
SF3A3-204ENST00000462258 EP400NLQ6ZTU2 488 aa11.32□□□□□ -0.6
SF3A3-204ENST00000462258 CATSPER3Q86XQ3 398 aa11.32□□□□□ -0.6
SF3A3-204ENST00000462258 ASAP3Q8TDY4 903 aa11.32□□□□□ -0.6
SF3A3-204ENST00000462258 RSPH1Q8WYR4 309 aa11.32□□□□□ -0.6
SF3A3-204ENST00000462258 POLR3CQ9BUI4 534 aaPredicted RBP11.32□□□□□ -0.6
SF3A3-204ENST00000462258 TRAIPQ9BWF2 469 aa11.32□□□□□ -0.6
SF3A3-204ENST00000462258 POLR3FQ9H1D9 316 aaPredicted RBP11.32□□□□□ -0.6
SF3A3-204ENST00000462258 MINDY3Q9H8M7 445 aa11.32□□□□□ -0.6
SF3A3-204ENST00000462258 CLDND1Q9NY35 253 aa11.32□□□□□ -0.6
SF3A3-204ENST00000462258 TDRD15B5MCY1 1934 aaKnown RBP11.32□□□□□ -0.6
SF3A3-204ENST00000462258 H3BQ06 376 aaPredicted RBP11.31□□□□□ -0.6
SF3A3-204ENST00000462258 NCK2O43639 380 aa11.31□□□□□ -0.6
SF3A3-204ENST00000462258 RPA1P27694 616 aa11.31□□□□□ -0.6
SF3A3-204ENST00000462258 PPM1AP35813 382 aa11.31□□□□□ -0.6
SF3A3-204ENST00000462258 PBX3P40426 434 aa11.31□□□□□ -0.6
SF3A3-204ENST00000462258 FXR2P51116 673 aaKnown RBP eCLIP11.31□□□□□ -0.6
SF3A3-204ENST00000462258 LRRC55Q6ZSA7 311 aa11.31□□□□□ -0.6
SF3A3-204ENST00000462258 LPPQ93052 612 aa11.31□□□□□ -0.6
SF3A3-204ENST00000462258 ZNF558Q96NG5 402 aa11.31□□□□□ -0.6
SF3A3-204ENST00000462258 TLR9Q9NR96 1032 aa11.31□□□□□ -0.6
SF3A3-204ENST00000462258 DBR1Q9UK59 544 aaKnown RBP11.31□□□□□ -0.6
SF3A3-204ENST00000462258 PCDHGC5Q9Y5F6 944 aa11.31□□□□□ -0.6
SF3A3-204ENST00000462258 A0A087WWV3 80 aa11.3□□□□□ -0.6
SF3A3-204ENST00000462258 MEIS3P2A8K0S8 358 aa11.3□□□□□ -0.6
SF3A3-204ENST00000462258 H3BQV1 296 aa11.3□□□□□ -0.6
SF3A3-204ENST00000462258 INO80B-WBP1J3KQ70 363 aa11.3□□□□□ -0.6
SF3A3-204ENST00000462258 TSPAN1O60635 241 aa11.3□□□□□ -0.6
SF3A3-204ENST00000462258 TBX10O75333 385 aa11.3□□□□□ -0.6
SF3A3-204ENST00000462258 XRCC6P12956 609 aaKnown RBP eCLIP11.3□□□□□ -0.6
SF3A3-204ENST00000462258 IL9P15248 144 aa11.3□□□□□ -0.6
SF3A3-204ENST00000462258 GLRA2P23416 452 aa11.3□□□□□ -0.6
SF3A3-204ENST00000462258 GTF2F1P35269 517 aaKnown RBP eCLIP11.3□□□□□ -0.6
SF3A3-204ENST00000462258 ARL2P36404 184 aa11.3□□□□□ -0.6
SF3A3-204ENST00000462258 TOB1P50616 345 aaPredicted RBP11.3□□□□□ -0.6
SF3A3-204ENST00000462258 PTENP60484 403 aa11.3□□□□□ -0.6
SF3A3-204ENST00000462258 MBTD1Q05BQ5 628 aa11.3□□□□□ -0.6
SF3A3-204ENST00000462258 PCBP1Q15365 356 aaKnown RBP eCLIP11.3□□□□□ -0.6
SF3A3-204ENST00000462258 CTC1Q2NKJ3 1217 aa11.3□□□□□ -0.6
SF3A3-204ENST00000462258 LONRF3Q496Y0 759 aa11.3□□□□□ -0.6
SF3A3-204ENST00000462258 MCTP1Q6DN14 999 aa11.3□□□□□ -0.6
SF3A3-204ENST00000462258 PTCRAQ6ISU1 281 aaPredicted RBP11.3□□□□□ -0.6
SF3A3-204ENST00000462258 KCNT2Q6UVM3 1135 aa11.3□□□□□ -0.6
SF3A3-204ENST00000462258 GLB1LQ6UWU2 654 aa11.3□□□□□ -0.6
SF3A3-204ENST00000462258 ADGRD2Q7Z7M1 963 aa11.3□□□□□ -0.6
SF3A3-204ENST00000462258 IFNLR1Q8IU57 520 aaPredicted RBP11.3□□□□□ -0.6
SF3A3-204ENST00000462258 C4orf32Q8N8J7 132 aa11.3□□□□□ -0.6
SF3A3-204ENST00000462258 MCPH1Q8NEM0 835 aa11.3□□□□□ -0.6
SF3A3-204ENST00000462258 GADD45GIP1Q8TAE8 222 aaPredicted RBP11.3□□□□□ -0.6
SF3A3-204ENST00000462258 PGBD4Q96DM1 585 aa11.3□□□□□ -0.6
SF3A3-204ENST00000462258 NACC1Q96RE7 527 aa11.3□□□□□ -0.6
SF3A3-204ENST00000462258 NFKBIZQ9BYH8 718 aa11.3□□□□□ -0.6
SF3A3-204ENST00000462258 RAB34Q9BZG1 259 aa11.3□□□□□ -0.6
SF3A3-204ENST00000462258 IGFLR1Q9H665 355 aa11.3□□□□□ -0.6
SF3A3-204ENST00000462258 GPRC5CQ9NQ84 441 aa11.3□□□□□ -0.6
SF3A3-204ENST00000462258 LRWD1Q9UFC0 647 aa11.3□□□□□ -0.6
SF3A3-204ENST00000462258 SMC3Q9UQE7 1217 aa11.3□□□□□ -0.6
SF3A3-204ENST00000462258 INPP5FQ9Y2H2 1132 aa11.3□□□□□ -0.6
SF3A3-204ENST00000462258 PCDHB6Q9Y5E3 794 aa11.3□□□□□ -0.6
SF3A3-204ENST00000462258 PCDHB2Q9Y5E7 798 aa11.3□□□□□ -0.6
SF3A3-204ENST00000462258 ARHGEF35A5YM69 484 aa11.29□□□□□ -0.6
SF3A3-204ENST00000462258 LAD1O00515 517 aa11.29□□□□□ -0.6
SF3A3-204ENST00000462258 LINC01565O15544 149 aa11.29□□□□□ -0.6
SF3A3-204ENST00000462258 ZNF623O75123 536 aa11.29□□□□□ -0.6
SF3A3-204ENST00000462258 ZC3H11AO75152 810 aaKnown RBP eCLIP11.29□□□□□ -0.6
SF3A3-204ENST00000462258 MUTP22033 750 aa11.29□□□□□ -0.6
SF3A3-204ENST00000462258 HOXA11P31270 313 aaPredicted RBP11.29□□□□□ -0.6
SF3A3-204ENST00000462258 LTBRP36941 435 aa11.29□□□□□ -0.6
SF3A3-204ENST00000462258 CCT6AP40227 531 aaKnown RBP11.29□□□□□ -0.6
SF3A3-204ENST00000462258 NRIP1P48552 1158 aa11.29□□□□□ -0.6
SF3A3-204ENST00000462258 NDUFV1P49821 464 aa11.29□□□□□ -0.6
SF3A3-204ENST00000462258 PLCB3Q01970 1234 aa11.29□□□□□ -0.6
SF3A3-204ENST00000462258 POU5F1BQ06416 359 aa11.29□□□□□ -0.6
SF3A3-204ENST00000462258 PTGDRQ13258 359 aa11.29□□□□□ -0.6
SF3A3-204ENST00000462258 PUS10Q3MIT2 529 aaKnown RBP11.29□□□□□ -0.6
SF3A3-204ENST00000462258 RILPL1Q5EBL4 403 aa11.29□□□□□ -0.6
SF3A3-204ENST00000462258 NOMO2Q5JPE7 1267 aa11.29□□□□□ -0.6
SF3A3-204ENST00000462258 UBXN11Q5T124 520 aa11.29□□□□□ -0.6
SF3A3-204ENST00000462258 PLPP4Q5VZY2 271 aa11.29□□□□□ -0.6
SF3A3-204ENST00000462258 NOTUMQ6P988 496 aa11.29□□□□□ -0.6
SF3A3-204ENST00000462258 MAEAQ7L5Y9 396 aa11.29□□□□□ -0.6
SF3A3-204ENST00000462258 SLC39A11Q8N1S5 342 aa11.29□□□□□ -0.6
SF3A3-204ENST00000462258 SNX29Q8TEQ0 813 aa11.29□□□□□ -0.6
SF3A3-204ENST00000462258 MRPS27Q92552 414 aaKnown RBP11.29□□□□□ -0.6
SF3A3-204ENST00000462258 CCDC51Q96ER9 411 aa11.29□□□□□ -0.6
SF3A3-204ENST00000462258 TCF25Q9BQ70 676 aa11.29□□□□□ -0.6
SF3A3-204ENST00000462258 RSAD1Q9HA92 442 aa11.29□□□□□ -0.6
SF3A3-204ENST00000462258 ENTPD7Q9NQZ7 604 aa11.29□□□□□ -0.6
SF3A3-204ENST00000462258 EIF4ENIF1Q9NRA8 985 aaKnown RBP11.29□□□□□ -0.6
SF3A3-204ENST00000462258 TBC1D13Q9NVG8 400 aa11.29□□□□□ -0.6
SF3A3-204ENST00000462258 LZTS1Q9Y250 596 aa11.29□□□□□ -0.6
Retrieved 100 of 20,778 RNA–protein pairs in 90.5 ms