RNA–Protein interactions for RNA: YFL009W

CDC4, Transcript of F-box protein required for both the G1/S and G2/M phase transitions, yeast

Gene CDC4, Length 2,340 nt, Biotype protein coding.

RNA		Protein				Prediction (catRAPID)		Interaction (RIP-Chip)
Gene	Ensembl Transcript ID	Gene	UniProt Accession	Length	Protein Status	Prediction Score	Prediction z-Score	Detected Interaction
CDC4	YFL009W	MSN2	P33748	704 aa		4.68	□□□□□ -1.66
CDC4	YFL009W	SKT5	P34226	696 aa		4.68	□□□□□ -1.66
CDC4	YFL009W	SNU114	P36048	1008 aa	Known RBP	4.68	□□□□□ -1.66
CDC4	YFL009W	FLR1	P38124	548 aa		4.68	□□□□□ -1.66
CDC4	YFL009W	MUP3	P38734	546 aa		4.68	□□□□□ -1.66
CDC4	YFL009W	SFB3	P38810	929 aa		4.68	□□□□□ -1.66
CDC4	YFL009W	FET3	P38993	636 aa		4.68	□□□□□ -1.66
CDC4	YFL009W	UIP3	P39547	235 aa		4.68	□□□□□ -1.66
CDC4	YFL009W	GDI1	P39958	451 aa	Known RBP	4.68	□□□□□ -1.66
CDC4	YFL009W	HPA3	P39979	161 aa		4.68	□□□□□ -1.66
CDC4	YFL009W	EAF5	P39995	279 aa		4.68	□□□□□ -1.66
CDC4	YFL009W	PRE6	P40303	254 aa	Known RBP	4.68	□□□□□ -1.66
CDC4	YFL009W	RPN11	P43588	306 aa	Known RBP	4.68	□□□□□ -1.66
CDC4	YFL009W	ATG18	P43601	500 aa		4.68	□□□□□ -1.66
CDC4	YFL009W	LYS20	P48570	428 aa	Known RBP	4.68	□□□□□ -1.66
CDC4	YFL009W	UBC9	P50623	157 aa	Predicted RBP	4.68	□□□□□ -1.66
CDC4	YFL009W	VPS62	P53285	467 aa		4.68	□□□□□ -1.66
CDC4	YFL009W	IDP3	P53982	420 aa	Known RBP	4.68	□□□□□ -1.66
CDC4	YFL009W	CAC2	Q04199	468 aa		4.68	□□□□□ -1.66
CDC4	YFL009W	EMI1	Q04406	187 aa		4.68	□□□□□ -1.66
CDC4	YFL009W	DPB4	Q04603	196 aa	Known RBP	4.68	□□□□□ -1.66
CDC4	YFL009W	PAL1	Q05518	499 aa	Known RBP	4.68	□□□□□ -1.66
CDC4	YFL009W	YLR446W	Q06204	433 aa		4.68	□□□□□ -1.66
CDC4	YFL009W	GUD1	Q07729	489 aa		4.68	□□□□□ -1.66
CDC4	YFL009W	KIN28	P06242	306 aa		4.68	□□□□□ -1.66
CDC4	YFL009W	AAT2	P23542	418 aa	Known RBP	4.68	□□□□□ -1.66
CDC4	YFL009W	MRPL9	P31334	269 aa		4.68	□□□□□ -1.66
CDC4	YFL009W	RPD3	P32561	433 aa		4.68	□□□□□ -1.66
CDC4	YFL009W	MRPL36	P36531	177 aa		4.68	□□□□□ -1.66
CDC4	YFL009W	YBR063C	P38083	404 aa		4.68	□□□□□ -1.66
CDC4	YFL009W	RRP3	P38712	501 aa	Known RBP	4.68	□□□□□ -1.66
CDC4	YFL009W	GIM4	P40005	111 aa	Known RBP	4.68	□□□□□ -1.66
CDC4	YFL009W	MPM1	P40364	252 aa		4.68	□□□□□ -1.66
CDC4	YFL009W	NSE4	P43124	402 aa		4.68	□□□□□ -1.66
CDC4	YFL009W	YFL052W	P43551	465 aa		4.68	□□□□□ -1.66
CDC4	YFL009W	IRC7	P43623	340 aa		4.68	□□□□□ -1.66
CDC4	YFL009W	ERV29	P53337	310 aa		4.68	□□□□□ -1.66
CDC4	YFL009W	ERV25	P54837	211 aa	Known RBP	4.68	□□□□□ -1.66
CDC4	YFL009W	TRS31	Q03337	283 aa		4.68	□□□□□ -1.66
CDC4	YFL009W	SDO1	Q07953	250 aa	Known RBP	4.68	□□□□□ -1.66
CDC4	YFL009W	MCA1	Q08601	432 aa		4.68	□□□□□ -1.66
CDC4	YFL009W	GPM2	Q12008	311 aa		4.68	□□□□□ -1.66
CDC4	YFL009W	YPR027C	Q12079	277 aa		4.68	□□□□□ -1.66
CDC4	YFL009W	NMD4	Q12129	218 aa		4.68	□□□□□ -1.66
CDC4	YFL009W	SKS1	Q12505	502 aa		4.68	□□□□□ -1.66
CDC4	YFL009W	ZPS1	Q12512	249 aa		4.68	□□□□□ -1.66
CDC4	YFL009W	COA6	Q3E846	104 aa		4.68	□□□□□ -1.66
CDC4	YFL009W	PEP4	P07267	405 aa	Known RBP	4.67	□□□□□ -1.66
CDC4	YFL009W	FBP1	P09201	348 aa		4.67	□□□□□ -1.66
CDC4	YFL009W	APE1	P14904	514 aa		4.67	□□□□□ -1.66
CDC4	YFL009W	MTF1	P14908	341 aa	Known RBP	4.67	□□□□□ -1.66
CDC4	YFL009W	EPT1	P22140	391 aa		4.67	□□□□□ -1.66
CDC4	YFL009W	TGL1	P34163	548 aa		4.67	□□□□□ -1.66
CDC4	YFL009W	TUL1	P36096	758 aa		4.67	□□□□□ -1.66
CDC4	YFL009W	JHD2	P47156	728 aa	Predicted RBP	4.67	□□□□□ -1.66
CDC4	YFL009W	GTO1	P48239	356 aa		4.67	□□□□□ -1.66
CDC4	YFL009W	COS10	P52924	374 aa		4.67	□□□□□ -1.66
CDC4	YFL009W	BOL2	P53082	120 aa		4.67	□□□□□ -1.66
CDC4	YFL009W	STR3	P53101	465 aa	Known RBP	4.67	□□□□□ -1.66
CDC4	YFL009W	PKP2	P53170	491 aa		4.67	□□□□□ -1.66
CDC4	YFL009W	KTR6	P54070	446 aa		4.67	□□□□□ -1.66
CDC4	YFL009W	YDC1	Q02896	317 aa		4.67	□□□□□ -1.66
CDC4	YFL009W	RLI1	Q03195	608 aa	Known RBP	4.67	□□□□□ -1.66
CDC4	YFL009W	VID22	Q05934	901 aa		4.67	□□□□□ -1.66
CDC4	YFL009W	MED7	Q08278	222 aa		4.67	□□□□□ -1.66
CDC4	YFL009W	SIA1	Q12212	622 aa		4.67	□□□□□ -1.66
CDC4	YFL009W	RGT2	Q12300	763 aa		4.67	□□□□□ -1.66
CDC4	YFL009W	YDL199C	Q12407	687 aa		4.67	□□□□□ -1.66
CDC4	YFL009W	RAS2	P01120	322 aa	Known RBP	4.67	□□□□□ -1.66
CDC4	YFL009W	HIS5	P07172	385 aa		4.67	□□□□□ -1.66
CDC4	YFL009W	RPS21A	P0C0V8	87 aa	Known RBP	4.67	□□□□□ -1.66
CDC4	YFL009W	RPL31A	P0C2H8	113 aa	Known RBP	4.67	□□□□□ -1.66
CDC4	YFL009W	RPL31B	P0C2H9	113 aa	Known RBP	4.67	□□□□□ -1.66
CDC4	YFL009W	TFS1	P14306	219 aa		4.67	□□□□□ -1.66
CDC4	YFL009W	SFC1	P33303	322 aa		4.67	□□□□□ -1.66
CDC4	YFL009W	SRY1	P36007	326 aa		4.67	□□□□□ -1.66
CDC4	YFL009W	MRP21	P38175	177 aa		4.67	□□□□□ -1.66
CDC4	YFL009W	ALP1	P38971	573 aa		4.67	□□□□□ -1.66
CDC4	YFL009W	VAB2	P40003	282 aa		4.67	□□□□□ -1.66
CDC4	YFL009W	ALG8	P40351	577 aa		4.67	□□□□□ -1.66
CDC4	YFL009W	FKH2	P41813	862 aa		4.67	□□□□□ -1.66
CDC4	YFL009W	GZF3	P42944	551 aa	Known RBP	4.67	□□□□□ -1.66
CDC4	YFL009W	RPA34	P47006	233 aa	Predicted RBP	4.67	□□□□□ -1.66
CDC4	YFL009W	HMS2	P47175	358 aa		4.67	□□□□□ -1.66
CDC4	YFL009W	PHB2	P50085	310 aa		4.67	□□□□□ -1.66
CDC4	YFL009W	YGL117W	P53133	265 aa		4.67	□□□□□ -1.66
CDC4	YFL009W	MZM1	Q03429	123 aa	Predicted RBP	4.67	□□□□□ -1.66
CDC4	YFL009W	DCR2	Q05924	578 aa		4.67	□□□□□ -1.66
CDC4	YFL009W	ANT1	Q06497	328 aa		4.67	□□□□□ -1.66
CDC4	YFL009W	SCP1	Q08873	200 aa		4.67	□□□□□ -1.66
CDC4	YFL009W	YTM1	Q12024	460 aa	Predicted RBP	4.67	□□□□□ -1.66
CDC4	YFL009W	RKM5	Q12367	367 aa		4.67	□□□□□ -1.66
CDC4	YFL009W	SNF8	Q12483	233 aa		4.67	□□□□□ -1.66
CDC4	YFL009W	Q0142	Q9ZZW4	58 aa		4.67	□□□□□ -1.66
CDC4	YFL009W	HTB1	P02293	131 aa	Known RBP	4.66	□□□□□ -1.66
CDC4	YFL009W	HTB2	P02294	131 aa		4.66	□□□□□ -1.66
CDC4	YFL009W	DST1	P07273	309 aa		4.66	□□□□□ -1.66
CDC4	YFL009W	TRP4	P07285	380 aa	Predicted RBP	4.66	□□□□□ -1.66
CDC4	YFL009W	SPS4	P09937	338 aa		4.66	□□□□□ -1.66
CDC4	YFL009W	MATALPHA1	P0CY06	175 aa		4.66	□□□□□ -1.66

Retrieved 100 of 5,963 RNA–protein pairs in 60.4 ms