RNA–Protein interactions for RNA: YNR015W

SMM1, Transcript of Dihydrouridine synthase, yeast

Gene SMM1, Length 1,155 nt, Biotype protein coding.

RNA		Protein				Prediction (catRAPID)		Interaction (RIP-Chip)
Gene	Ensembl Transcript ID	Gene	UniProt Accession	Length	Protein Status	Prediction Score	Prediction z-Score	Detected Interaction
SMM1	YNR015W	PRP40	P33203	583 aa	Known RBP	12.14	□□□□□ -0.47
SMM1	YNR015W	LYS4	P49367	693 aa	Predicted RBP	12.13	□□□□□ -0.47
SMM1	YNR015W	AKL1	P38080	1108 aa	Known RBP	12.12	□□□□□ -0.47
SMM1	YNR015W	RRP46	P53256	223 aa	Predicted RBP	12.12	□□□□□ -0.47
SMM1	YNR015W	INP54	Q08227	384 aa	Known RBP	12.12	□□□□□ -0.47
SMM1	YNR015W	HSP104	P31539	908 aa	Known RBP	12.11	□□□□□ -0.47
SMM1	YNR015W	OSM1	P21375	501 aa	Known RBP	12.1	□□□□□ -0.47
SMM1	YNR015W	CTF4	Q01454	927 aa		12.1	□□□□□ -0.47
SMM1	YNR015W	ATG13	Q06628	738 aa		12.1	□□□□□ -0.47
SMM1	YNR015W	IOC4	Q04213	475 aa		12.09	□□□□□ -0.47
SMM1	YNR015W	YBL086C	P38177	466 aa		12.08	□□□□□ -0.48
SMM1	YNR015W	GTT3	P39996	337 aa		12.08	□□□□□ -0.48
SMM1	YNR015W	NUP145	P49687	1317 aa		12.06	□□□□□ -0.48
SMM1	YNR015W	CTH1	P47976	325 aa		12.05	□□□□□ -0.48
SMM1	YNR015W	NTH2	P35172	780 aa		12.04	□□□□□ -0.48
SMM1	YNR015W	UGA2	P38067	497 aa		12.03	□□□□□ -0.48
SMM1	YNR015W	ALD2	P47771	506 aa		12.03	□□□□□ -0.48
SMM1	YNR015W	AOS1	Q06624	347 aa		12.03	□□□□□ -0.48
SMM1	YNR015W	MRPL32	P25348	183 aa		12.02	□□□□□ -0.49
SMM1	YNR015W	MSB4	Q12317	492 aa		12.02	□□□□□ -0.49
SMM1	YNR015W	RTR1	P40084	226 aa	Predicted RBP	12.01	□□□□□ -0.49
SMM1	YNR015W	SSA2	P10592	639 aa	Known RBP	12	□□□□□ -0.49
SMM1	YNR015W	GRX1	P25373	110 aa	Known RBP	12	□□□□□ -0.49
SMM1	YNR015W	PRD1	P25375	712 aa		12	□□□□□ -0.49
SMM1	YNR015W	TFA1	P36100	482 aa		12	□□□□□ -0.49
SMM1	YNR015W	YBP2	P53169	641 aa		12	□□□□□ -0.49
SMM1	YNR015W	RIM15	P43565	1770 aa		12	□□□□□ -0.49
SMM1	YNR015W	TUM1	Q08686	304 aa	Known RBP	11.99	□□□□□ -0.49
SMM1	YNR015W	YNL050C	P53952	270 aa		11.97	□□□□□ -0.49
SMM1	YNR015W	RAD4	P14736	754 aa		11.96	□□□□□ -0.49
SMM1	YNR015W	KCC4	P25389	1037 aa		11.96	□□□□□ -0.49
SMM1	YNR015W	GRE2	Q12068	342 aa	Known RBP	11.96	□□□□□ -0.49
SMM1	YNR015W	BDF1	P35817	686 aa		11.95	□□□□□ -0.5
SMM1	YNR015W	SPT21	P35209	758 aa		11.94	□□□□□ -0.5
SMM1	YNR015W	MPP10	P47083	593 aa	Known RBP	11.94	□□□□□ -0.5
SMM1	YNR015W	THI22	Q06490	572 aa		11.93	□□□□□ -0.5
SMM1	YNR015W	YDL144C	Q07589	356 aa		11.92	□□□□□ -0.5
SMM1	YNR015W	UGA3	P26370	528 aa		11.91	□□□□□ -0.5
SMM1	YNR015W	RMT2	Q03305	412 aa		11.91	□□□□□ -0.5
SMM1	YNR015W	BUG1	Q12191	341 aa		11.91	□□□□□ -0.5
SMM1	YNR015W	ALD3	P54114	506 aa		11.9	□□□□□ -0.5
SMM1	YNR015W	ALE1	Q08548	619 aa		11.9	□□□□□ -0.5
SMM1	YNR015W	ZDS1	P50111	915 aa	Known RBP	11.89	□□□□□ -0.51
SMM1	YNR015W	NSE3	Q05541	303 aa		11.89	□□□□□ -0.51
SMM1	YNR015W	RTT109	Q07794	436 aa		11.88	□□□□□ -0.51
SMM1	YNR015W	NOP53	Q12080	455 aa	Known RBP	11.88	□□□□□ -0.51
SMM1	YNR015W	MAM1	P40065	302 aa		11.87	□□□□□ -0.51
SMM1	YNR015W	UTP22	P53254	1237 aa	Predicted RBP	11.87	□□□□□ -0.51
SMM1	YNR015W	NYV1	Q12255	253 aa		11.86	□□□□□ -0.51
SMM1	YNR015W	TOS1	P38288	455 aa		11.85	□□□□□ -0.51
SMM1	YNR015W	SAP155	P43612	1002 aa		11.85	□□□□□ -0.51
SMM1	YNR015W	HEF3	P53978	1044 aa	Known RBP	11.85	□□□□□ -0.51
SMM1	YNR015W	TPD3	P31383	635 aa		11.84	□□□□□ -0.51
SMM1	YNR015W	RRT14	P40470	206 aa		11.84	□□□□□ -0.51
SMM1	YNR015W	BUD27	P43573	796 aa	Known RBP RIP-Chip data	11.84	□□□□□ -0.51	not detected
SMM1	YNR015W	BMS1	Q08965	1183 aa	Known RBP	11.84	□□□□□ -0.51
SMM1	YNR015W	PHM7	Q12252	991 aa		11.84	□□□□□ -0.51
SMM1	YNR015W	RPP0	P05317	312 aa	Known RBP	11.83	□□□□□ -0.52
SMM1	YNR015W	GYP7	P48365	746 aa		11.83	□□□□□ -0.52
SMM1	YNR015W	MDG1	P53885	366 aa		11.83	□□□□□ -0.52
SMM1	YNR015W	COQ4	O13525	335 aa		11.82	□□□□□ -0.52
SMM1	YNR015W	TEA1	P47988	759 aa		11.82	□□□□□ -0.52
SMM1	YNR015W	SSP2	Q08646	371 aa		11.81	□□□□□ -0.52
SMM1	YNR015W	LYS2	P07702	1392 aa		11.8	□□□□□ -0.52
SMM1	YNR015W	YBR287W	P38355	427 aa		11.8	□□□□□ -0.52
SMM1	YNR015W	SUI2	P20459	304 aa	Known RBP	11.79	□□□□□ -0.52
SMM1	YNR015W	SER1	P33330	395 aa	Known RBP	11.79	□□□□□ -0.52
SMM1	YNR015W	VPS27	P40343	622 aa	Known RBP	11.79	□□□□□ -0.52
SMM1	YNR015W	YFR016C	P43597	1233 aa	Known RBP	11.79	□□□□□ -0.52
SMM1	YNR015W	HPC2	Q01448	625 aa		11.79	□□□□□ -0.52
SMM1	YNR015W	ARG8	P18544	423 aa		11.77	□□□□□ -0.53
SMM1	YNR015W	RIX7	Q07844	837 aa	Known RBP	11.77	□□□□□ -0.53
SMM1	YNR015W	YGL082W	P53155	381 aa		11.76	□□□□□ -0.53
SMM1	YNR015W	ZDS2	P54786	942 aa		11.76	□□□□□ -0.53
SMM1	YNR015W	YOL057W	Q08225	711 aa		11.76	□□□□□ -0.53
SMM1	YNR015W	CTI6	Q08923	506 aa		11.76	□□□□□ -0.53
SMM1	YNR015W	YPR204W	Q08995	1032 aa		11.76	□□□□□ -0.53
SMM1	YNR015W	DCD1	P06773	312 aa		11.75	□□□□□ -0.53
SMM1	YNR015W	APL2	P36000	726 aa	Predicted RBP	11.75	□□□□□ -0.53
SMM1	YNR015W	SRT1	Q03175	343 aa		11.75	□□□□□ -0.53
SMM1	YNR015W	CDC45	Q08032	650 aa		11.75	□□□□□ -0.53
SMM1	YNR015W	EAF6	P47128	113 aa		11.73	□□□□□ -0.53
SMM1	YNR015W	LPD1	P09624	499 aa	Known RBP	11.72	□□□□□ -0.53
SMM1	YNR015W	VPS64	Q03944	604 aa		11.71	□□□□□ -0.53
SMM1	YNR015W	RVB2	Q12464	471 aa	Known RBP	11.71	□□□□□ -0.53
SMM1	YNR015W	UTP10	P42945	1769 aa	Known RBP	11.71	□□□□□ -0.54
SMM1	YNR015W	MSN5	P52918	1224 aa		11.7	□□□□□ -0.54
SMM1	YNR015W	PRS1	P32895	427 aa	Known RBP	11.69	□□□□□ -0.54
SMM1	YNR015W	ERT1	P38140	529 aa		11.69	□□□□□ -0.54
SMM1	YNR015W	DNM1	P54861	757 aa		11.69	□□□□□ -0.54
SMM1	YNR015W	RAT1	Q02792	1006 aa	Known RBP	11.69	□□□□□ -0.54
SMM1	YNR015W	YDR306C	Q06640	478 aa		11.69	□□□□□ -0.54
SMM1	YNR015W	SSA1	P10591	642 aa	Known RBP	11.68	□□□□□ -0.54
SMM1	YNR015W	CTT1	P06115	562 aa		11.67	□□□□□ -0.54
SMM1	YNR015W	YKR023W	P36119	530 aa	Known RBP	11.67	□□□□□ -0.54
SMM1	YNR015W	YJR008W	P47085	338 aa		11.67	□□□□□ -0.54
SMM1	YNR015W	NSR1	P27476	414 aa	Known RBP RIP-Chip data	11.66	□□□□□ -0.54	not detected
SMM1	YNR015W	YKL222C	P35995	705 aa		11.66	□□□□□ -0.54
SMM1	YNR015W	CST6	P40535	587 aa		11.66	□□□□□ -0.54
SMM1	YNR015W	YLR271W	Q06152	274 aa		11.66	□□□□□ -0.54

Retrieved 100 of 5,963 RNA–protein pairs in 12.4 ms