RNA–Protein interactions for RNA: YMR223W

UBP8, Transcript of Ubiquitin-specific protease component of the SAGA acetylation complex, yeastyeast

Gene UBP8, Length 1,416 nt, Biotype protein coding.

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RNA Protein Prediction (catRAPID) Interaction (RIP-Chip)
Gene Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score Detected Interaction
UBP8YMR223W YLR346CQ06139 101 aa7.9□□□□□ -1.14
UBP8YMR223W SSA2P10592 639 aaKnown RBP7.89□□□□□ -1.15
UBP8YMR223W NUP85P46673 744 aa7.88□□□□□ -1.15
UBP8YMR223W YDL176WQ12027 708 aa7.86□□□□□ -1.15
UBP8YMR223W RAD59Q12223 238 aa7.86□□□□□ -1.15
UBP8YMR223W KIN1P13185 1064 aa7.86□□□□□ -1.15
UBP8YMR223W YBL086CP38177 466 aa7.86□□□□□ -1.15
UBP8YMR223W EMW1P42842 904 aaKnown RBP7.85□□□□□ -1.15
UBP8YMR223W RPN1P38764 993 aaKnown RBP7.84□□□□□ -1.15
UBP8YMR223W OPT2Q06593 877 aa7.84□□□□□ -1.15
UBP8YMR223W ARG82P07250 355 aa7.83□□□□□ -1.16
UBP8YMR223W GLY1P37303 387 aaKnown RBP7.83□□□□□ -1.16
UBP8YMR223W ACO2P39533 789 aa7.83□□□□□ -1.16
UBP8YMR223W FIG4P42837 879 aa7.83□□□□□ -1.16
UBP8YMR223W AAD14P42884 376 aa7.79□□□□□ -1.16
UBP8YMR223W MIP1P15801 1254 aa7.78□□□□□ -1.16
UBP8YMR223W TEC1P18412 486 aa7.78□□□□□ -1.16
UBP8YMR223W MAK16P10962 306 aaPredicted RBP7.78□□□□□ -1.16
UBP8YMR223W LSC2P53312 427 aa7.78□□□□□ -1.16
UBP8YMR223W APP1P53933 587 aa7.78□□□□□ -1.16
UBP8YMR223W SCW11P53189 542 aa7.77□□□□□ -1.17
UBP8YMR223W NAF1P53919 492 aaKnown RBP7.77□□□□□ -1.17
UBP8YMR223W CAF120P53836 1060 aa7.75□□□□□ -1.17
UBP8YMR223W UBP2Q01476 1272 aa7.75□□□□□ -1.17
UBP8YMR223W YPR084WQ06821 456 aa7.75□□□□□ -1.17
UBP8YMR223W MKS1P34072 584 aa7.74□□□□□ -1.17
UBP8YMR223W CSE4P36012 229 aa7.74□□□□□ -1.17
UBP8YMR223W TY1A-BLQ12266 440 aa7.74□□□□□ -1.17
UBP8YMR223W GUT2P32191 649 aa7.73□□□□□ -1.17
UBP8YMR223W ITT1Q04638 464 aa7.73□□□□□ -1.17
UBP8YMR223W HPC2Q01448 625 aa7.71□□□□□ -1.17
UBP8YMR223W FBP26P32604 452 aa7.7□□□□□ -1.18
UBP8YMR223W GUA1P38625 525 aaKnown RBP7.7□□□□□ -1.18
UBP8YMR223W YJR098CP47139 656 aa7.7□□□□□ -1.18
UBP8YMR223W DFG5Q05031 458 aa7.69□□□□□ -1.18
UBP8YMR223W FRA1Q07825 749 aa7.69□□□□□ -1.18
UBP8YMR223W BDS1Q08347 646 aa7.69□□□□□ -1.18
UBP8YMR223W STE6P12866 1290 aa7.68□□□□□ -1.18
UBP8YMR223W STE20Q03497 939 aaKnown RBP7.68□□□□□ -1.18
UBP8YMR223W SPT5P27692 1063 aaKnown RBP7.67□□□□□ -1.18
UBP8YMR223W DLD1P32891 587 aa7.67□□□□□ -1.18
UBP8YMR223W YIR007WP40566 764 aa7.67□□□□□ -1.18
UBP8YMR223W TCB1Q12466 1186 aa7.67□□□□□ -1.18
UBP8YMR223W MRX12P47084 519 aa7.66□□□□□ -1.18
UBP8YMR223W RPP2BP02400 110 aaKnown RBP7.65□□□□□ -1.18
UBP8YMR223W ISU1Q03020 165 aa7.64□□□□□ -1.19
UBP8YMR223W ATG20Q07528 640 aa7.64□□□□□ -1.19
UBP8YMR223W OSH7P38755 437 aa7.63□□□□□ -1.19
UBP8YMR223W YGR035CP53222 116 aa7.63□□□□□ -1.19
UBP8YMR223W BRL1P38770 471 aa7.62□□□□□ -1.19
UBP8YMR223W TRK2P28584 889 aa7.61□□□□□ -1.19
UBP8YMR223W VTC4P47075 721 aa7.61□□□□□ -1.19
UBP8YMR223W YBL036CP38197 257 aa7.61□□□□□ -1.19
UBP8YMR223W ROG3P43602 733 aa7.6□□□□□ -1.19
UBP8YMR223W HPF1Q05164 967 aa7.6□□□□□ -1.19
UBP8YMR223W TY1A-MR1Q04215 440 aa7.59□□□□□ -1.19
UBP8YMR223W APL6P46682 809 aa7.57□□□□□ -1.2
UBP8YMR223W MCM16Q12262 181 aa7.57□□□□□ -1.2
UBP8YMR223W DLD3P39976 496 aaKnown RBP7.56□□□□□ -1.2
UBP8YMR223W TFB3Q03290 321 aa7.56□□□□□ -1.2
UBP8YMR223W DPH6Q12429 685 aa7.56□□□□□ -1.2
UBP8YMR223W EMP47P43555 445 aa7.55□□□□□ -1.2
UBP8YMR223W DAL1P32375 460 aa7.54□□□□□ -1.2
UBP8YMR223W YPP1P46951 817 aa7.54□□□□□ -1.2
UBP8YMR223W CDC19P00549 500 aaKnown RBP7.53□□□□□ -1.2
UBP8YMR223W SPT2P06843 333 aaPredicted RBP7.53□□□□□ -1.2
UBP8YMR223W ATG3P40344 310 aa7.53□□□□□ -1.2
UBP8YMR223W LYS5P50113 272 aa7.53□□□□□ -1.2
UBP8YMR223W CCP1P00431 361 aa7.52□□□□□ -1.2
UBP8YMR223W YPR204WQ08995 1032 aa7.52□□□□□ -1.2
UBP8YMR223W UTP13Q05946 817 aaKnown RBP7.52□□□□□ -1.21
UBP8YMR223W YDJ1P25491 409 aaKnown RBP7.51□□□□□ -1.21
UBP8YMR223W ISR1Q06098 443 aaKnown RBP7.51□□□□□ -1.21
UBP8YMR223W WTM2Q12206 467 aa7.5□□□□□ -1.21
UBP8YMR223W PKC1P24583 1151 aa7.49□□□□□ -1.21
UBP8YMR223W ISF1P32488 338 aa7.49□□□□□ -1.21
UBP8YMR223W MSN5P52918 1224 aa7.49□□□□□ -1.21
UBP8YMR223W NAM8Q00539 523 aaKnown RBP7.49□□□□□ -1.21
UBP8YMR223W SUP45P12385 437 aaKnown RBP7.48□□□□□ -1.21
UBP8YMR223W UTR2P32623 467 aa7.48□□□□□ -1.21
UBP8YMR223W TBS1P38114 1094 aa7.47□□□□□ -1.21
UBP8YMR223W MTC5Q03897 1148 aa7.47□□□□□ -1.21
UBP8YMR223W DAT1P13483 248 aaKnown RBP7.46□□□□□ -1.21
UBP8YMR223W BIO2P32451 375 aa7.45□□□□□ -1.22
UBP8YMR223W JJJ3P47138 172 aa7.45□□□□□ -1.22
UBP8YMR223W SSN3P39073 555 aa7.44□□□□□ -1.22
UBP8YMR223W UBP15P50101 1230 aa7.44□□□□□ -1.22
UBP8YMR223W HAL5P38970 855 aaKnown RBP7.44□□□□□ -1.22
UBP8YMR223W HGH1P48362 394 aaKnown RBP7.43□□□□□ -1.22
UBP8YMR223W SLA1P32790 1244 aa7.42□□□□□ -1.22
UBP8YMR223W SOH1P38633 127 aa7.42□□□□□ -1.22
UBP8YMR223W ICP55P40051 511 aa7.42□□□□□ -1.22
UBP8YMR223W CUZ1P53899 274 aa7.42□□□□□ -1.22
UBP8YMR223W YNL108CP53929 270 aa7.41□□□□□ -1.22
UBP8YMR223W ENO2P00925 437 aaKnown RBP7.4□□□□□ -1.22
UBP8YMR223W AHP1P38013 176 aaKnown RBP7.4□□□□□ -1.22
UBP8YMR223W HDA3Q06623 655 aa7.4□□□□□ -1.22
UBP8YMR223W SLX8P40072 274 aa7.39□□□□□ -1.23
UBP8YMR223W SUM1P46676 1062 aa7.39□□□□□ -1.23
UBP8YMR223W RIM21P48565 533 aa7.39□□□□□ -1.23
Retrieved 100 of 5,963 RNA–protein pairs in 8.5 ms