RNA–Protein interactions for RNA: YLR055C

SPT8, Transcript of Subunit of the SAGA transcriptional regulatory complex, yeastyeast

Gene SPT8, Length 1,809 nt, Biotype protein coding.

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RNA Protein Prediction (catRAPID) Interaction (RIP-Chip)
Gene Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score Detected Interaction
SPT8YLR055C MEC3Q02574 474 aa13.63□□□□□ -0.23
SPT8YLR055C RAD2P07276 1031 aa13.62□□□□□ -0.23
SPT8YLR055C RTR1P40084 226 aaPredicted RBP13.62□□□□□ -0.23
SPT8YLR055C RPN11P43588 306 aaKnown RBP13.62□□□□□ -0.23
SPT8YLR055C RRP46P53256 223 aaPredicted RBP13.62□□□□□ -0.23
SPT8YLR055C YRF1-4O13559 1382 aa13.61□□□□□ -0.23
SPT8YLR055C COBP00163 385 aa13.6□□□□□ -0.23
SPT8YLR055C BUD31P25337 157 aaPredicted RBP13.6□□□□□ -0.23
SPT8YLR055C AKL1P38080 1108 aaKnown RBP13.6□□□□□ -0.23
SPT8YLR055C SAP155P43612 1002 aa13.6□□□□□ -0.23
SPT8YLR055C DSD1P53095 428 aa13.6□□□□□ -0.23
SPT8YLR055C FRK1Q03002 865 aaPredicted RBP13.6□□□□□ -0.23
SPT8YLR055C ADE16P54113 591 aaKnown RBP13.6□□□□□ -0.23
SPT8YLR055C HSP104P31539 908 aaKnown RBP13.59□□□□□ -0.23
SPT8YLR055C LAM6Q08001 693 aa13.57□□□□□ -0.24
SPT8YLR055C UBP1P25037 809 aa13.57□□□□□ -0.24
SPT8YLR055C YJL181WP46987 611 aa13.57□□□□□ -0.24
SPT8YLR055C DAL5P15365 543 aa13.55□□□□□ -0.24
SPT8YLR055C INP54Q08227 384 aaKnown RBP13.55□□□□□ -0.24
SPT8YLR055C TPD3P31383 635 aa13.54□□□□□ -0.24
SPT8YLR055C PRP40P33203 583 aaKnown RBP13.54□□□□□ -0.24
SPT8YLR055C YKR075CP36155 307 aa13.54□□□□□ -0.24
SPT8YLR055C YIL092WP40497 633 aa13.54□□□□□ -0.24
SPT8YLR055C ATG13Q06628 738 aa13.54□□□□□ -0.24
SPT8YLR055C PRI1P10363 409 aa13.53□□□□□ -0.24
SPT8YLR055C ROX1P25042 368 aa13.53□□□□□ -0.24
SPT8YLR055C EDE1P34216 1381 aa13.53□□□□□ -0.24
SPT8YLR055C PCT1P13259 424 aa13.53□□□□□ -0.24
SPT8YLR055C BUD27P43573 796 aaKnown RBP RIP-Chip data13.53□□□□□ -0.24not detected
SPT8YLR055C CTF4Q01454 927 aa13.53□□□□□ -0.24
SPT8YLR055C THI22Q06490 572 aa13.52□□□□□ -0.25
SPT8YLR055C RIM15P43565 1770 aa13.51□□□□□ -0.25
SPT8YLR055C PRD1P25375 712 aa13.5□□□□□ -0.25
SPT8YLR055C NPR2P39923 615 aa13.5□□□□□ -0.25
SPT8YLR055C POL32P47110 350 aa13.5□□□□□ -0.25
SPT8YLR055C OSM1P21375 501 aaKnown RBP13.5□□□□□ -0.25
SPT8YLR055C AOS1Q06624 347 aa13.5□□□□□ -0.25
SPT8YLR055C NUP145P49687 1317 aa13.48□□□□□ -0.25
SPT8YLR055C NTH2P35172 780 aa13.48□□□□□ -0.25
SPT8YLR055C HEF3P53978 1044 aaKnown RBP13.48□□□□□ -0.25
SPT8YLR055C DJP1P40564 432 aa13.47□□□□□ -0.25
SPT8YLR055C LYS4P49367 693 aaPredicted RBP13.44□□□□□ -0.26
SPT8YLR055C YBP2P53169 641 aa13.44□□□□□ -0.26
SPT8YLR055C YNL050CP53952 270 aa13.43□□□□□ -0.26
SPT8YLR055C KCC4P25389 1037 aa13.42□□□□□ -0.26
SPT8YLR055C VPS24P36095 224 aaKnown RBP13.42□□□□□ -0.26
SPT8YLR055C RTT109Q07794 436 aa13.42□□□□□ -0.26
SPT8YLR055C PUF6Q04373 656 aaKnown RBP13.41□□□□□ -0.26
SPT8YLR055C MAK21Q12176 1025 aaKnown RBP13.41□□□□□ -0.26
SPT8YLR055C SLN1P39928 1220 aaPredicted RBP13.41□□□□□ -0.26
SPT8YLR055C GRX1P25373 110 aaKnown RBP13.39□□□□□ -0.27
SPT8YLR055C YBL086CP38177 466 aa13.39□□□□□ -0.27
SPT8YLR055C MSB4Q12317 492 aa13.39□□□□□ -0.27
SPT8YLR055C MNN4P36044 1178 aa13.37□□□□□ -0.27
SPT8YLR055C MSP1P28737 362 aa13.36□□□□□ -0.27
SPT8YLR055C ZDS1P50111 915 aaKnown RBP13.36□□□□□ -0.27
SPT8YLR055C ALE1Q08548 619 aa13.36□□□□□ -0.27
SPT8YLR055C UGA3P26370 528 aa13.36□□□□□ -0.27
SPT8YLR055C ALD2P47771 506 aa13.36□□□□□ -0.27
SPT8YLR055C TCB2P48231 1178 aa13.36□□□□□ -0.27
SPT8YLR055C NSE3Q05541 303 aa13.35□□□□□ -0.27
SPT8YLR055C TUM1Q08686 304 aaKnown RBP13.35□□□□□ -0.27
SPT8YLR055C RMT2Q03305 412 aa13.34□□□□□ -0.27
SPT8YLR055C RLF2Q12495 606 aa13.34□□□□□ -0.27
SPT8YLR055C GTT3P39996 337 aa13.34□□□□□ -0.27
SPT8YLR055C UGA2P38067 497 aa13.33□□□□□ -0.28
SPT8YLR055C MAM1P40065 302 aa13.33□□□□□ -0.28
SPT8YLR055C CTH1P47976 325 aa13.33□□□□□ -0.28
SPT8YLR055C LSP1Q12230 341 aaKnown RBP13.33□□□□□ -0.28
SPT8YLR055C RRT14P40470 206 aa13.32□□□□□ -0.28
SPT8YLR055C GRE2Q12068 342 aaKnown RBP13.32□□□□□ -0.28
SPT8YLR055C SSA2P10592 639 aaKnown RBP13.32□□□□□ -0.28
SPT8YLR055C RAD4P14736 754 aa13.32□□□□□ -0.28
SPT8YLR055C YBR287WP38355 427 aa13.31□□□□□ -0.28
SPT8YLR055C GYP7P48365 746 aa13.3□□□□□ -0.28
SPT8YLR055C BMS1Q08965 1183 aaKnown RBP13.3□□□□□ -0.28
SPT8YLR055C BDF1P35817 686 aa13.29□□□□□ -0.28
SPT8YLR055C ARL1P38116 183 aaKnown RBP13.29□□□□□ -0.28
SPT8YLR055C TRP5P00931 707 aaKnown RBP13.29□□□□□ -0.28
SPT8YLR055C BUG1Q12191 341 aa13.29□□□□□ -0.28
SPT8YLR055C COQ4O13525 335 aa13.28□□□□□ -0.28
SPT8YLR055C NOP53Q12080 455 aaKnown RBP13.28□□□□□ -0.28
SPT8YLR055C LYS2P07702 1392 aa13.26□□□□□ -0.29
SPT8YLR055C RPG1P38249 964 aaKnown RBP13.26□□□□□ -0.29
SPT8YLR055C ITC1P53125 1264 aa13.25□□□□□ -0.29
SPT8YLR055C TEA1P47988 759 aa13.25□□□□□ -0.29
SPT8YLR055C KNS1P32350 737 aaPredicted RBP13.24□□□□□ -0.29
SPT8YLR055C ALD3P54114 506 aa13.24□□□□□ -0.29
SPT8YLR055C ECM16Q04217 1267 aaKnown RBP13.24□□□□□ -0.29
SPT8YLR055C NOT3P06102 836 aaKnown RBP13.23□□□□□ -0.29
SPT8YLR055C MDG1P53885 366 aa13.23□□□□□ -0.29
SPT8YLR055C SSP2Q08646 371 aa13.23□□□□□ -0.29
SPT8YLR055C ILV3P39522 585 aaKnown RBP13.22□□□□□ -0.29
SPT8YLR055C UTP22P53254 1237 aaPredicted RBP13.21□□□□□ -0.29
SPT8YLR055C SRT1Q03175 343 aa13.21□□□□□ -0.29
SPT8YLR055C PHM7Q12252 991 aa13.21□□□□□ -0.29
SPT8YLR055C NYV1Q12255 253 aa13.21□□□□□ -0.29
SPT8YLR055C SRS2P12954 1174 aa13.2□□□□□ -0.3
SPT8YLR055C ZDS2P54786 942 aa13.2□□□□□ -0.3
SPT8YLR055C UTP10P42945 1769 aaKnown RBP13.2□□□□□ -0.3
Retrieved 100 of 5,963 RNA–protein pairs in 24 ms