RNA–Protein interactions for RNA: YKR098C

UBP11, Transcript of Ubiquitin-specific protease, yeastyeast

Gene UBP11, Length 2,154 nt, Biotype protein coding.

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RNA Protein Prediction (catRAPID) Interaction (RIP-Chip)
Gene Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score Detected Interaction
UBP11YKR098C ENV9Q08651 330 aa3.53□□□□□ -1.84
UBP11YKR098C SAP30P38429 201 aa3.53□□□□□ -1.84
UBP11YKR098C FIG4P42837 879 aa3.53□□□□□ -1.84
UBP11YKR098C TEC1P18412 486 aa3.52□□□□□ -1.85
UBP11YKR098C UBX7P38349 436 aa3.52□□□□□ -1.85
UBP11YKR098C BNI4P53858 892 aa3.52□□□□□ -1.85
UBP11YKR098C ALR1Q08269 859 aa3.52□□□□□ -1.85
UBP11YKR098C PAC1P39946 494 aaKnown RBP3.52□□□□□ -1.85
UBP11YKR098C APL6P46682 809 aa3.52□□□□□ -1.85
UBP11YKR098C STE20Q03497 939 aaKnown RBP3.52□□□□□ -1.85
UBP11YKR098C PDC1P06169 563 aaKnown RBP3.51□□□□□ -1.85
UBP11YKR098C CHL1P22516 861 aaPredicted RBP3.51□□□□□ -1.85
UBP11YKR098C GUT2P32191 649 aa3.51□□□□□ -1.85
UBP11YKR098C HEM3P28789 327 aa3.51□□□□□ -1.85
UBP11YKR098C YPR015CQ12531 247 aa3.51□□□□□ -1.85
UBP11YKR098C TPS3P38426 1054 aaKnown RBP3.5□□□□□ -1.85
UBP11YKR098C CWC15Q03772 175 aaKnown RBP3.5□□□□□ -1.85
UBP11YKR098C UTP13Q05946 817 aaKnown RBP3.5□□□□□ -1.85
UBP11YKR098C PRT1P06103 763 aaKnown RBP3.49□□□□□ -1.85
UBP11YKR098C PHO87P25360 923 aa3.49□□□□□ -1.85
UBP11YKR098C ATG3P40344 310 aa3.49□□□□□ -1.85
UBP11YKR098C YEL077CQ3E7X8 1277 aa3.49□□□□□ -1.85
UBP11YKR098C YBL113CQ7M4S9 792 aa3.49□□□□□ -1.85
UBP11YKR098C SPT23P35210 1082 aa3.49□□□□□ -1.85
UBP11YKR098C SOH1P38633 127 aa3.49□□□□□ -1.85
UBP11YKR098C STM1P39015 273 aaKnown RBP3.49□□□□□ -1.85
UBP11YKR098C RRN7P40992 514 aa3.49□□□□□ -1.85
UBP11YKR098C HXT10P43581 546 aa3.49□□□□□ -1.85
UBP11YKR098C ACS2P52910 683 aaKnown RBP3.49□□□□□ -1.85
UBP11YKR098C ROM1P53046 1155 aa3.49□□□□□ -1.85
UBP11YKR098C KXD1P53158 218 aa3.49□□□□□ -1.85
UBP11YKR098C SNU71P53207 620 aaKnown RBP3.49□□□□□ -1.85
UBP11YKR098C HAP4P14064 554 aa3.48□□□□□ -1.85
UBP11YKR098C VAC17P25591 423 aa3.48□□□□□ -1.85
UBP11YKR098C ERP5P38819 212 aa3.48□□□□□ -1.85
UBP11YKR098C IPL1P38991 367 aa3.48□□□□□ -1.85
UBP11YKR098C ELP4Q02884 456 aaKnown RBP3.48□□□□□ -1.85
UBP11YKR098C PUF6Q04373 656 aaKnown RBP3.48□□□□□ -1.85
UBP11YKR098C TRL1P09880 827 aaKnown RBP3.48□□□□□ -1.85
UBP11YKR098C TPD3P31383 635 aa3.48□□□□□ -1.85
UBP11YKR098C RRN6P32786 894 aa3.48□□□□□ -1.85
UBP11YKR098C PRE3P38624 215 aa3.48□□□□□ -1.85
UBP11YKR098C PTC2P39966 464 aaKnown RBP3.48□□□□□ -1.85
UBP11YKR098C TSC13Q99190 310 aa3.48□□□□□ -1.85
UBP11YKR098C PAT1P25644 796 aaKnown RBP3.47□□□□□ -1.85
UBP11YKR098C RRD1P40454 393 aaKnown RBP3.47□□□□□ -1.85
UBP11YKR098C NOP7P53261 605 aaKnown RBP3.47□□□□□ -1.85
UBP11YKR098C YML082WQ04533 649 aaKnown RBP3.47□□□□□ -1.85
UBP11YKR098C KAR5Q04746 504 aa3.47□□□□□ -1.85
UBP11YKR098C MOD5P07884 428 aa3.46□□□□□ -1.85
UBP11YKR098C PNP1Q05788 311 aa3.46□□□□□ -1.85
UBP11YKR098C GAS4Q08271 471 aa3.46□□□□□ -1.85
UBP11YKR098C PDI1P17967 522 aaKnown RBP3.46□□□□□ -1.86
UBP11YKR098C SEC20P28791 383 aa3.46□□□□□ -1.86
UBP11YKR098C IXR1P33417 597 aa3.46□□□□□ -1.86
UBP11YKR098C PAM1P37304 830 aaKnown RBP3.46□□□□□ -1.86
UBP11YKR098C HAL5P38970 855 aaKnown RBP3.46□□□□□ -1.86
UBP11YKR098C RGA1P39083 1007 aa3.46□□□□□ -1.86
UBP11YKR098C MDJ2P42834 146 aa3.46□□□□□ -1.86
UBP11YKR098C MSC6Q08818 692 aaKnown RBP3.46□□□□□ -1.86
UBP11YKR098C CBC2Q08920 208 aaKnown RBP RIP-Chip data3.46□□□□□ -1.86not detected
UBP11YKR098C XDJ1P39102 459 aa3.45□□□□□ -1.86
UBP11YKR098C BOL3P39724 118 aa3.45□□□□□ -1.86
UBP11YKR098C ORC1P54784 914 aaPredicted RBP3.45□□□□□ -1.86
UBP11YKR098C SRS2P12954 1174 aa3.45□□□□□ -1.86
UBP11YKR098C SPT16P32558 1035 aaKnown RBP3.45□□□□□ -1.86
UBP11YKR098C VRP1P37370 817 aa3.45□□□□□ -1.86
UBP11YKR098C YHL050CP38721 697 aa3.45□□□□□ -1.86
UBP11YKR098C YHR219WP38900 624 aa3.45□□□□□ -1.86
UBP11YKR098C ITT1Q04638 464 aa3.45□□□□□ -1.86
UBP11YKR098C ISR1Q06098 443 aaKnown RBP3.45□□□□□ -1.86
UBP11YKR098C ATG1P53104 897 aa3.44□□□□□ -1.86
UBP11YKR098C PUN1Q06991 263 aa3.44□□□□□ -1.86
UBP11YKR098C DPS1P04802 557 aaKnown RBP3.44□□□□□ -1.86
UBP11YKR098C MIP1P15801 1254 aa3.44□□□□□ -1.86
UBP11YKR098C ASF1P32447 279 aa3.44□□□□□ -1.86
UBP11YKR098C GRS1P38088 690 aaKnown RBP3.44□□□□□ -1.86
UBP11YKR098C AIM9P40053 627 aaKnown RBP3.44□□□□□ -1.86
UBP11YKR098C HDA3Q06623 655 aa3.44□□□□□ -1.86
UBP11YKR098C FUR4P05316 633 aaKnown RBP3.43□□□□□ -1.86
UBP11YKR098C VAN1P23642 535 aa3.43□□□□□ -1.86
UBP11YKR098C YFL034WP43564 1073 aa3.43□□□□□ -1.86
UBP11YKR098C RRP15Q06511 250 aaPredicted RBP3.43□□□□□ -1.86
UBP11YKR098C ATG20Q07528 640 aa3.43□□□□□ -1.86
UBP11YKR098C PPX1P38698 397 aa3.42□□□□□ -1.86
UBP11YKR098C ALD4P46367 519 aaKnown RBP3.42□□□□□ -1.86
UBP11YKR098C ALD2P47771 506 aa3.42□□□□□ -1.86
UBP11YKR098C WHI5Q12416 295 aa3.42□□□□□ -1.86
UBP11YKR098C ATE1P16639 503 aa3.42□□□□□ -1.86
UBP11YKR098C UBP1P25037 809 aa3.42□□□□□ -1.86
UBP11YKR098C SUV3P32580 737 aa3.42□□□□□ -1.86
UBP11YKR098C MET10P39692 1035 aa3.42□□□□□ -1.86
UBP11YKR098C SAS4Q04003 481 aa3.42□□□□□ -1.86
UBP11YKR098C TRS33Q99394 268 aa3.42□□□□□ -1.86
UBP11YKR098C NTH2P35172 780 aa3.41□□□□□ -1.86
UBP11YKR098C GLO3P38682 493 aaKnown RBP3.41□□□□□ -1.86
UBP11YKR098C QDR1P40475 563 aa3.41□□□□□ -1.86
UBP11YKR098C ACF4P47129 309 aa3.41□□□□□ -1.86
UBP11YKR098C AIM44Q99299 758 aa3.41□□□□□ -1.86
UBP11YKR098C EMW1P42842 904 aaKnown RBP3.41□□□□□ -1.86
Retrieved 100 of 5,963 RNA–protein pairs in 20.3 ms