RNA–Protein interactions for RNA: YBR223C

TDP1, Transcript of Tyrosyl-DNA phosphodiesterase I, yeastyeast

Gene TDP1, Length 1,635 nt, Biotype protein coding.

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RNA Protein Prediction (catRAPID) Interaction (RIP-Chip)
Gene Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score Detected Interaction
TDP1YBR223C CSI1Q04368 295 aa8.36□□□□□ -1.07
TDP1YBR223C YIL177CP40434 1758 aa8.36□□□□□ -1.07
TDP1YBR223C YJL225CP40889 1758 aa8.36□□□□□ -1.07
TDP1YBR223C CTF4Q01454 927 aa8.36□□□□□ -1.07
TDP1YBR223C COQ4O13525 335 aa8.35□□□□□ -1.07
TDP1YBR223C PRP5P21372 849 aaPredicted RBP8.35□□□□□ -1.07
TDP1YBR223C ILV3P39522 585 aaKnown RBP8.35□□□□□ -1.07
TDP1YBR223C SPO1P53541 631 aa8.35□□□□□ -1.07
TDP1YBR223C NSE3Q05541 303 aa8.34□□□□□ -1.07
TDP1YBR223C NOP8Q08287 484 aaPredicted RBP8.34□□□□□ -1.07
TDP1YBR223C FKS3Q04952 1785 aa8.34□□□□□ -1.08
TDP1YBR223C PRP45P28004 379 aaPredicted RBP8.33□□□□□ -1.08
TDP1YBR223C VPS24P36095 224 aaKnown RBP8.33□□□□□ -1.08
TDP1YBR223C NMD2P38798 1089 aaKnown RBP8.33□□□□□ -1.08
TDP1YBR223C NKP2Q06162 153 aa8.33□□□□□ -1.08
TDP1YBR223C YPR148CQ06523 435 aa8.33□□□□□ -1.08
TDP1YBR223C SLM3Q12093 417 aa8.33□□□□□ -1.08
TDP1YBR223C RLF2Q12495 606 aa8.33□□□□□ -1.08
TDP1YBR223C RPS19AP07280 144 aaKnown RBP8.32□□□□□ -1.08
TDP1YBR223C RPS19BP07281 144 aaPredicted RBP8.32□□□□□ -1.08
TDP1YBR223C UGA3P26370 528 aa8.32□□□□□ -1.08
TDP1YBR223C RFC1P38630 861 aaKnown RBP8.32□□□□□ -1.08
TDP1YBR223C DJP1P40564 432 aa8.32□□□□□ -1.08
TDP1YBR223C RAD50P12753 1312 aa8.32□□□□□ -1.08
TDP1YBR223C URB1P34241 1764 aaKnown RBP8.32□□□□□ -1.08
TDP1YBR223C ROX1P25042 368 aa8.32□□□□□ -1.08
TDP1YBR223C KCC4P25389 1037 aa8.31□□□□□ -1.08
TDP1YBR223C MSB3P48566 633 aaPredicted RBP8.31□□□□□ -1.08
TDP1YBR223C RAD24P32641 659 aa8.29□□□□□ -1.08
TDP1YBR223C XKS1P42826 600 aa8.29□□□□□ -1.08
TDP1YBR223C ITC1P53125 1264 aa8.29□□□□□ -1.08
TDP1YBR223C YOL057WQ08225 711 aa8.29□□□□□ -1.08
TDP1YBR223C LSP1Q12230 341 aaKnown RBP8.29□□□□□ -1.08
TDP1YBR223C TCB1Q12466 1186 aa8.29□□□□□ -1.08
TDP1YBR223C LYS2P07702 1392 aa8.28□□□□□ -1.08
TDP1YBR223C RAD4P14736 754 aa8.28□□□□□ -1.08
TDP1YBR223C DLD1P32891 587 aa8.28□□□□□ -1.08
TDP1YBR223C RCR1P38212 213 aa8.28□□□□□ -1.08
TDP1YBR223C MRP7P12687 371 aa8.27□□□□□ -1.09
TDP1YBR223C YGR122WP53272 402 aa8.27□□□□□ -1.09
TDP1YBR223C GCR2Q01722 534 aa8.27□□□□□ -1.09
TDP1YBR223C SRS2P12954 1174 aa8.26□□□□□ -1.09
TDP1YBR223C MSP1P28737 362 aa8.26□□□□□ -1.09
TDP1YBR223C BRN1P38170 754 aa8.25□□□□□ -1.09
TDP1YBR223C NUP145P49687 1317 aa8.25□□□□□ -1.09
TDP1YBR223C GCD7P32502 381 aaPredicted RBP8.25□□□□□ -1.09
TDP1YBR223C BDP1P46678 594 aa8.25□□□□□ -1.09
TDP1YBR223C SWC3P31376 625 aa8.24□□□□□ -1.09
TDP1YBR223C SLN1P39928 1220 aaPredicted RBP8.24□□□□□ -1.09
TDP1YBR223C BOI2P39969 1040 aa8.24□□□□□ -1.09
TDP1YBR223C CDC16P09798 840 aa8.23□□□□□ -1.09
TDP1YBR223C HGH1P48362 394 aaKnown RBP8.23□□□□□ -1.09
TDP1YBR223C INP54Q08227 384 aaKnown RBP8.23□□□□□ -1.09
TDP1YBR223C ALE1Q08548 619 aa8.23□□□□□ -1.09
TDP1YBR223C VAS1P07806 1104 aaKnown RBP8.22□□□□□ -1.09
TDP1YBR223C ARL1P38116 183 aaKnown RBP8.22□□□□□ -1.09
TDP1YBR223C PTP3P40048 928 aa8.22□□□□□ -1.09
TDP1YBR223C YDR306CQ06640 478 aa8.22□□□□□ -1.09
TDP1YBR223C ROM2P51862 1356 aaKnown RBP8.22□□□□□ -1.09
TDP1YBR223C ZDS2P54786 942 aa8.21□□□□□ -1.09
TDP1YBR223C DNM1P54861 757 aa8.21□□□□□ -1.09
TDP1YBR223C NUP133P36161 1157 aa8.21□□□□□ -1.1
TDP1YBR223C HXT13P39924 564 aa8.21□□□□□ -1.1
TDP1YBR223C TEA1P47988 759 aa8.21□□□□□ -1.1
TDP1YBR223C MEC3Q02574 474 aa8.21□□□□□ -1.1
TDP1YBR223C COG8Q04632 607 aa8.21□□□□□ -1.1
TDP1YBR223C RSF2P46974 1380 aa8.21□□□□□ -1.1
TDP1YBR223C MIF2P35201 549 aa8.19□□□□□ -1.1
TDP1YBR223C CST6P40535 587 aa8.19□□□□□ -1.1
TDP1YBR223C HXT17P53631 564 aa8.19□□□□□ -1.1
TDP1YBR223C NCB2Q92317 146 aa8.19□□□□□ -1.1
TDP1YBR223C RNR2P09938 399 aaKnown RBP8.18□□□□□ -1.1
TDP1YBR223C OSM1P21375 501 aaKnown RBP8.17□□□□□ -1.1
TDP1YBR223C ADE16P54113 591 aaKnown RBP8.17□□□□□ -1.1
TDP1YBR223C VPS64Q03944 604 aa8.17□□□□□ -1.1
TDP1YBR223C SWI1P09547 1314 aa8.16□□□□□ -1.1
TDP1YBR223C ATG13Q06628 738 aa8.16□□□□□ -1.1
TDP1YBR223C PDR18P53756 1333 aa8.15□□□□□ -1.1
TDP1YBR223C CAB3P36076 571 aa8.15□□□□□ -1.1
TDP1YBR223C NPA3P47122 385 aa8.15□□□□□ -1.1
TDP1YBR223C YGL081WP53156 320 aa8.15□□□□□ -1.1
TDP1YBR223C YBP2P53169 641 aa8.15□□□□□ -1.1
TDP1YBR223C HAP5Q02516 242 aa8.15□□□□□ -1.1
TDP1YBR223C RMT2Q03305 412 aa8.15□□□□□ -1.1
TDP1YBR223C VPS20Q04272 221 aa8.15□□□□□ -1.1
TDP1YBR223C FPR4Q06205 392 aaPredicted RBP8.15□□□□□ -1.1
TDP1YBR223C KNS1P32350 737 aaPredicted RBP8.14□□□□□ -1.11
TDP1YBR223C SSF1P38789 453 aaPredicted RBP8.14□□□□□ -1.11
TDP1YBR223C UBP12P39538 1254 aa8.14□□□□□ -1.11
TDP1YBR223C RMD1Q03441 430 aa8.14□□□□□ -1.11
TDP1YBR223C NOT3P06102 836 aaKnown RBP8.14□□□□□ -1.11
TDP1YBR223C LPD1P09624 499 aaKnown RBP8.14□□□□□ -1.11
TDP1YBR223C ECM21P38167 1117 aaKnown RBP8.14□□□□□ -1.11
TDP1YBR223C IES2P40154 320 aa8.14□□□□□ -1.11
TDP1YBR223C KRI1P42846 591 aaKnown RBP8.14□□□□□ -1.11
TDP1YBR223C ENT1Q12518 454 aa8.14□□□□□ -1.11
TDP1YBR223C TRL1P09880 827 aaKnown RBP8.13□□□□□ -1.11
TDP1YBR223C REB1P21538 810 aa8.13□□□□□ -1.11
TDP1YBR223C YKL133CP36066 463 aa8.13□□□□□ -1.11
TDP1YBR223C BDH2P39713 417 aa8.13□□□□□ -1.11
Retrieved 100 of 5,963 RNA–protein pairs in 72.6 ms